RNA–Protein interactions for RNA: ENST00000536688.5

RFX4-204, Transcript of regulatory factor X4, humanhuman

TSL 1 (best)

Gene RFX4, Length 2,186 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4-204ENST00000536688 TEX14Q8IWB6 1497 aa13.03□□□□□ -0.32
RFX4-204ENST00000536688 MCM4P33991 863 aa13.03□□□□□ -0.32
RFX4-204ENST00000536688 L3MBTL2Q969R5 705 aa13.03□□□□□ -0.32
RFX4-204ENST00000536688 USP19O94966 1318 aa13.02□□□□□ -0.32
RFX4-204ENST00000536688 MYBBP1AQ9BQG0 1328 aaKnown RBP13.02□□□□□ -0.33
RFX4-204ENST00000536688 ZNF608Q9ULD9 1512 aaPredicted RBP13.02□□□□□ -0.33
RFX4-204ENST00000536688 ZMYM3Q14202 1370 aa13.01□□□□□ -0.33
RFX4-204ENST00000536688 CASKIN1Q8WXD9 1431 aa13.01□□□□□ -0.33
RFX4-204ENST00000536688 RIPK4P57078 832 aa13.01□□□□□ -0.33
RFX4-204ENST00000536688 BCL11BQ9C0K0 894 aaPredicted RBP13.01□□□□□ -0.33
RFX4-204ENST00000536688 DMTNQ08495 405 aa13□□□□□ -0.33
RFX4-204ENST00000536688 IFT140Q96RY7 1462 aa13□□□□□ -0.33
RFX4-204ENST00000536688 SCAPERQ9BY12 1400 aa13□□□□□ -0.33
RFX4-204ENST00000536688 ZNF326Q5BKZ1 582 aaKnown RBP13□□□□□ -0.33
RFX4-204ENST00000536688 POLA1P09884 1462 aaPredicted RBP12.99□□□□□ -0.33
RFX4-204ENST00000536688 FGD5Q6ZNL6 1462 aa12.99□□□□□ -0.33
RFX4-204ENST00000536688 RAD54L2Q9Y4B4 1467 aa12.99□□□□□ -0.33
RFX4-204ENST00000536688 BBXQ8WY36 941 aaPredicted RBP12.98□□□□□ -0.33
RFX4-204ENST00000536688 TRAK2O60296 914 aa12.98□□□□□ -0.33
RFX4-204ENST00000536688 CANXP27824 592 aaKnown RBP12.98□□□□□ -0.33
RFX4-204ENST00000536688 NLRP1Q9C000 1473 aa12.98□□□□□ -0.33
RFX4-204ENST00000536688 EFCAB5A4FU69 1503 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 DDX11L8A8MPP1 907 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 GTF2E1P29083 439 aaPredicted RBP12.97□□□□□ -0.33
RFX4-204ENST00000536688 ZSCAN30Q86W11 494 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 BCORL1Q5H9F3 1711 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 KIF20AO95235 890 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 HS1BP3Q53T59 392 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 PPP1R9BQ96SB3 815 aa12.97□□□□□ -0.33
RFX4-204ENST00000536688 CTTNBP2Q8WZ74 1663 aa12.96□□□□□ -0.33
RFX4-204ENST00000536688 DYNC1I1O14576 645 aa12.96□□□□□ -0.33
RFX4-204ENST00000536688 CCDC173Q0VFZ6 552 aa12.96□□□□□ -0.33
RFX4-204ENST00000536688 CNGB1Q14028 1251 aaPredicted RBP12.96□□□□□ -0.33
RFX4-204ENST00000536688 IPO4Q8TEX9 1081 aaKnown RBP12.96□□□□□ -0.33
RFX4-204ENST00000536688 TNNT2P45379 298 aaPredicted RBP12.96□□□□□ -0.34
RFX4-204ENST00000536688 NBPF8Q3BBV2 869 aa12.96□□□□□ -0.34
RFX4-204ENST00000536688 SKAP1Q86WV1 359 aa12.96□□□□□ -0.34
RFX4-204ENST00000536688 TARBP1Q13395 1621 aaKnown RBP12.95□□□□□ -0.34
RFX4-204ENST00000536688 MAPK8IP3Q9UPT6 1336 aa12.95□□□□□ -0.34
RFX4-204ENST00000536688 BLMP54132 1417 aaPredicted RBP12.95□□□□□ -0.34
RFX4-204ENST00000536688 PTMSP20962 102 aa12.95□□□□□ -0.34
RFX4-204ENST00000536688 STAC3Q96MF2 364 aa12.95□□□□□ -0.34
RFX4-204ENST00000536688 NAP1L2Q9ULW6 460 aaPredicted RBP12.95□□□□□ -0.34
RFX4-204ENST00000536688 EIF3AQ14152 1382 aaKnown RBP12.95□□□□□ -0.34
RFX4-204ENST00000536688 GTPBP4Q9BZE4 634 aaKnown RBP12.94□□□□□ -0.34
RFX4-204ENST00000536688 CHMP5Q9NZZ3 219 aa12.94□□□□□ -0.34
RFX4-204ENST00000536688 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.94□□□□□ -0.34
RFX4-204ENST00000536688 SLKQ9H2G2 1235 aaPredicted RBP12.94□□□□□ -0.34
RFX4-204ENST00000536688 ANKRD30BQ9BXX2 1392 aa12.94□□□□□ -0.34
RFX4-204ENST00000536688 E9PCH4 1651 aa12.94□□□□□ -0.34
RFX4-204ENST00000536688 TAF3Q5VWG9 929 aa12.93□□□□□ -0.34
RFX4-204ENST00000536688 KDM5CP41229 1560 aa12.93□□□□□ -0.34
RFX4-204ENST00000536688 NLRP13Q86W25 1043 aa12.93□□□□□ -0.34
RFX4-204ENST00000536688 EIF4G3O43432 1585 aaKnown RBP12.92□□□□□ -0.34
RFX4-204ENST00000536688 MBD5Q9P267 1494 aa12.92□□□□□ -0.34
RFX4-204ENST00000536688 PLIN1O60240 522 aa12.91□□□□□ -0.34
RFX4-204ENST00000536688 SKOR2Q2VWA4 1001 aaPredicted RBP12.91□□□□□ -0.34
RFX4-204ENST00000536688 TCOF1Q13428 1488 aaKnown RBP12.91□□□□□ -0.34
RFX4-204ENST00000536688 KIF14Q15058 1648 aa12.91□□□□□ -0.34
RFX4-204ENST00000536688 MPHOSPH9Q99550 1183 aa12.91□□□□□ -0.34
RFX4-204ENST00000536688 CCDC94Q9BW85 323 aaPredicted RBP12.91□□□□□ -0.34
RFX4-204ENST00000536688 UPF2Q9HAU5 1272 aaKnown RBP12.91□□□□□ -0.34
RFX4-204ENST00000536688 TDRD9Q8NDG6 1382 aaKnown RBP12.9□□□□□ -0.34
RFX4-204ENST00000536688 ZNF500O60304 480 aaPredicted RBP12.9□□□□□ -0.34
RFX4-204ENST00000536688 LETM1O95202 739 aaPredicted RBP12.9□□□□□ -0.34
RFX4-204ENST00000536688 USP47Q96K76 1375 aa12.9□□□□□ -0.34
RFX4-204ENST00000536688 ZSCAN20P17040 1043 aaPredicted RBP12.9□□□□□ -0.34
RFX4-204ENST00000536688 MSNP26038 577 aaKnown RBP12.9□□□□□ -0.34
RFX4-204ENST00000536688 TBC1D32Q96NH3 1257 aa12.9□□□□□ -0.34
RFX4-204ENST00000536688 FAM13BQ9NYF5 915 aa12.9□□□□□ -0.34
RFX4-204ENST00000536688 CSPP1Q1MSJ5 1256 aa12.89□□□□□ -0.35
RFX4-204ENST00000536688 TBC1D2Q9BYX2 928 aa12.89□□□□□ -0.35
RFX4-204ENST00000536688 GZF1Q9H116 711 aaPredicted RBP12.89□□□□□ -0.35
RFX4-204ENST00000536688 IGF1RP08069 1367 aa12.89□□□□□ -0.35
RFX4-204ENST00000536688 PARD3Q8TEW0 1356 aa12.89□□□□□ -0.35
RFX4-204ENST00000536688 IBTKQ9P2D0 1353 aaPredicted RBP12.89□□□□□ -0.35
RFX4-204ENST00000536688 SUPT6HQ7KZ85 1726 aaKnown RBP12.89□□□□□ -0.35
RFX4-204ENST00000536688 PPP4R3BQ5MIZ7 849 aa12.88□□□□□ -0.35
RFX4-204ENST00000536688 MCM5P33992 734 aa12.87□□□□□ -0.35
RFX4-204ENST00000536688 RSPH4AQ5TD94 716 aa12.87□□□□□ -0.35
RFX4-204ENST00000536688 CDCA7LQ96GN5 454 aa12.87□□□□□ -0.35
RFX4-204ENST00000536688 ANP32BQ92688 251 aaKnown RBP12.87□□□□□ -0.35
RFX4-204ENST00000536688 ARXQ96QS3 562 aa12.87□□□□□ -0.35
RFX4-204ENST00000536688 ZHX1Q9UKY1 873 aaPredicted RBP12.87□□□□□ -0.35
RFX4-204ENST00000536688 C20orf194Q5TEA3 1177 aa12.86□□□□□ -0.35
RFX4-204ENST00000536688 ARHGEF11O15085 1522 aa12.86□□□□□ -0.35
RFX4-204ENST00000536688 CARMIL1Q5VZK9 1371 aa12.85□□□□□ -0.35
RFX4-204ENST00000536688 VGFO15240 615 aaPredicted RBP12.85□□□□□ -0.35
RFX4-204ENST00000536688 EHBP1L1Q8N3D4 1523 aa12.85□□□□□ -0.35
RFX4-204ENST00000536688 MTUS2Q5JR59 1369 aa12.84□□□□□ -0.35
RFX4-204ENST00000536688 UQCRHLA0A096LP55 91 aa12.84□□□□□ -0.35
RFX4-204ENST00000536688 UQCRHP07919 91 aa12.84□□□□□ -0.35
RFX4-204ENST00000536688 GAPVD1Q14C86 1478 aa12.84□□□□□ -0.35
RFX4-204ENST00000536688 NOL7Q9UMY1 257 aaKnown RBP12.84□□□□□ -0.35
RFX4-204ENST00000536688 NCOA3Q9Y6Q9 1424 aa12.83□□□□□ -0.35
RFX4-204ENST00000536688 RIMBP3CA6NJZ7 1639 aa12.83□□□□□ -0.36
RFX4-204ENST00000536688 RIMBP3BA6NNM3 1639 aa12.83□□□□□ -0.36
RFX4-204ENST00000536688 RIMBP3Q9UFD9 1639 aa12.83□□□□□ -0.36
RFX4-204ENST00000536688 TMEM51Q9NW97 253 aa12.83□□□□□ -0.36
RFX4-204ENST00000536688 CIZ1Q9ULV3 898 aaPredicted RBP12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 236.1 ms