RNA–Protein interactions for RNA: ENST00000535927.5

VAMP1-205, Transcript of vesicle associated membrane protein 1, humanhuman

TSL 4

Gene VAMP1, Length 578 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP1-205ENST00000535927 RAB3GAP2Q9H2M9 1393 aa24.13■■□□□ 1.45
VAMP1-205ENST00000535927 KIF3BO15066 747 aa24.11■■□□□ 1.45
VAMP1-205ENST00000535927 FAM135AQ9P2D6 1515 aa24.09■■□□□ 1.45
VAMP1-205ENST00000535927 KANK1Q14678 1352 aa24.07■■□□□ 1.44
VAMP1-205ENST00000535927 RNF17Q9BXT8 1623 aaKnown RBP24.07■■□□□ 1.44
VAMP1-205ENST00000535927 DEPDC5O75140 1603 aa24.06■■□□□ 1.44
VAMP1-205ENST00000535927 UNC13BO14795 1591 aa24.05■■□□□ 1.44
VAMP1-205ENST00000535927 KDM5DQ9BY66 1539 aa24.02■■□□□ 1.44
VAMP1-205ENST00000535927 ARID4BQ4LE39 1312 aaPredicted RBP24.02■■□□□ 1.44
VAMP1-205ENST00000535927 PRDM15P57071 1507 aaPredicted RBP24.01■■□□□ 1.43
VAMP1-205ENST00000535927 NUP155O75694 1391 aa24.01■■□□□ 1.43
VAMP1-205ENST00000535927 TRIM52Q96A61 297 aa24■■□□□ 1.43
VAMP1-205ENST00000535927 GGT6Q6P531 493 aa23.99■■□□□ 1.43
VAMP1-205ENST00000535927 FBXO41Q8TF61 875 aa23.98■■□□□ 1.43
VAMP1-205ENST00000535927 VWDEQ8N2E2 1590 aa23.98■■□□□ 1.43
VAMP1-205ENST00000535927 IQGAP3Q86VI3 1631 aa23.96■■□□□ 1.43
VAMP1-205ENST00000535927 ZC3H13Q5T200 1668 aaKnown RBP23.95■■□□□ 1.43
VAMP1-205ENST00000535927 LMTK2Q8IWU2 1503 aa23.95■■□□□ 1.43
VAMP1-205ENST00000535927 CNTLNQ9NXG0 1405 aa23.95■■□□□ 1.42
VAMP1-205ENST00000535927 WASHC2CQ9Y4E1 1318 aa23.95■■□□□ 1.42
VAMP1-205ENST00000535927 ESF1Q9H501 851 aaKnown RBP23.95■■□□□ 1.42
VAMP1-205ENST00000535927 MROH1Q8NDA8 1641 aa23.95■■□□□ 1.42
VAMP1-205ENST00000535927 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.94■■□□□ 1.42
VAMP1-205ENST00000535927 SIGLEC1Q9BZZ2 1709 aa23.93■■□□□ 1.42
VAMP1-205ENST00000535927 MPHOSPH9Q99550 1183 aa23.92■■□□□ 1.42
VAMP1-205ENST00000535927 SLC4A1APQ9BWU0 796 aaKnown RBP23.92■■□□□ 1.42
VAMP1-205ENST00000535927 PTPRMP28827 1452 aa23.91■■□□□ 1.42
VAMP1-205ENST00000535927 ADAMTSL3P82987 1691 aa23.9■■□□□ 1.42
VAMP1-205ENST00000535927 TET3O43151 1660 aa23.89■■□□□ 1.41
VAMP1-205ENST00000535927 ARHGAP31Q2M1Z3 1444 aa23.88■■□□□ 1.41
VAMP1-205ENST00000535927 PZPP20742 1482 aa23.87■■□□□ 1.41
VAMP1-205ENST00000535927 RPRD2Q5VT52 1461 aaKnown RBP23.87■■□□□ 1.41
VAMP1-205ENST00000535927 ABCC3O15438 1527 aa23.87■■□□□ 1.41
VAMP1-205ENST00000535927 CLSPNQ9HAW4 1339 aa23.86■■□□□ 1.41
VAMP1-205ENST00000535927 MLECQ14165 292 aa23.86■■□□□ 1.41
VAMP1-205ENST00000535927 MROH2AA6NES4 1674 aa23.84■■□□□ 1.41
VAMP1-205ENST00000535927 DHX57Q6P158 1386 aaKnown RBP23.82■■□□□ 1.4
VAMP1-205ENST00000535927 PKD2Q13563 968 aa23.82■■□□□ 1.4
VAMP1-205ENST00000535927 EFCAB6Q5THR3 1501 aa23.8■■□□□ 1.4
VAMP1-205ENST00000535927 CEP152O94986 1710 aa23.8■■□□□ 1.4
VAMP1-205ENST00000535927 FER1L4A9Z1Z3 1794 aa23.8■■□□□ 1.4
VAMP1-205ENST00000535927 CAMSAP1Q5T5Y3 1602 aa23.8■■□□□ 1.4
VAMP1-205ENST00000535927 ZMYM3Q14202 1370 aa23.79■■□□□ 1.4
VAMP1-205ENST00000535927 MADDQ8WXG6 1647 aa23.78■■□□□ 1.4
VAMP1-205ENST00000535927 CLTCQ00610 1675 aaKnown RBP23.78■■□□□ 1.4
VAMP1-205ENST00000535927 E9PCH4 1651 aa23.75■■□□□ 1.39
VAMP1-205ENST00000535927 NPATQ14207 1427 aa23.74■■□□□ 1.39
VAMP1-205ENST00000535927 PTPRTO14522 1441 aa23.73■■□□□ 1.39
VAMP1-205ENST00000535927 CCER1Q8TC90 406 aaPredicted RBP23.72■■□□□ 1.39
VAMP1-205ENST00000535927 RIMS1Q86UR5 1692 aaKnown RBP23.72■■□□□ 1.39
VAMP1-205ENST00000535927 LMTK3Q96Q04 1460 aa23.71■■□□□ 1.39
VAMP1-205ENST00000535927 ANKRD30BQ9BXX2 1392 aa23.71■■□□□ 1.39
VAMP1-205ENST00000535927 SETD1BQ9UPS6 1966 aaKnown RBP23.71■■□□□ 1.39
VAMP1-205ENST00000535927 NOS1P29475 1434 aa23.69■■□□□ 1.38
VAMP1-205ENST00000535927 SLC52A1Q9NWF4 448 aa23.69■■□□□ 1.38
VAMP1-205ENST00000535927 SPATA31D1Q6ZQQ2 1576 aa23.66■■□□□ 1.38
VAMP1-205ENST00000535927 SPHKAPQ2M3C7 1700 aa23.66■■□□□ 1.38
VAMP1-205ENST00000535927 CFAP65Q6ZU64 1925 aaKnown RBP23.65■■□□□ 1.38
VAMP1-205ENST00000535927 C3P01024 1663 aa23.65■■□□□ 1.38
VAMP1-205ENST00000535927 PREX1Q8TCU6 1659 aa23.65■■□□□ 1.38
VAMP1-205ENST00000535927 TRPM2O94759 1503 aa23.64■■□□□ 1.38
VAMP1-205ENST00000535927 ERVK-7P63135 1459 aa23.64■■□□□ 1.38
VAMP1-205ENST00000535927 PLPPR3Q6T4P5 718 aa23.64■■□□□ 1.37
VAMP1-205ENST00000535927 CCDC144AA2RUR9 1427 aa23.62■■□□□ 1.37
VAMP1-205ENST00000535927 TIMELESSQ9UNS1 1208 aa23.62■■□□□ 1.37
VAMP1-205ENST00000535927 PLA2R1Q13018 1463 aa23.62■■□□□ 1.37
VAMP1-205ENST00000535927 FOXD1Q16676 465 aa23.61■■□□□ 1.37
VAMP1-205ENST00000535927 HSPA2P54652 639 aa23.6■■□□□ 1.37
VAMP1-205ENST00000535927 TNRQ92752 1358 aa23.59■■□□□ 1.37
VAMP1-205ENST00000535927 NLRP1Q9C000 1473 aa23.58■■□□□ 1.37
VAMP1-205ENST00000535927 FBXO31Q5XUX0 539 aaPredicted RBP23.58■■□□□ 1.37
VAMP1-205ENST00000535927 NEURL4Q96JN8 1562 aa23.57■■□□□ 1.36
VAMP1-205ENST00000535927 STAC3Q96MF2 364 aa23.56■■□□□ 1.36
VAMP1-205ENST00000535927 CEBPAP49715 358 aaPredicted RBP23.55■■□□□ 1.36
VAMP1-205ENST00000535927 PIK3C2BO00750 1634 aa23.55■■□□□ 1.36
VAMP1-205ENST00000535927 SYNMO15061 1565 aa23.54■■□□□ 1.36
VAMP1-205ENST00000535927 KDM5AP29375 1690 aaKnown RBP23.53■■□□□ 1.36
VAMP1-205ENST00000535927 KIF1BO60333 1816 aa23.52■■□□□ 1.36
VAMP1-205ENST00000535927 IDI1Q13907 227 aa23.52■■□□□ 1.36
VAMP1-205ENST00000535927 CERKQ8TCT0 537 aa23.51■■□□□ 1.35
VAMP1-205ENST00000535927 CLTCL1P53675 1640 aa23.49■■□□□ 1.35
VAMP1-205ENST00000535927 RPGRIP1LQ68CZ1 1315 aa23.49■■□□□ 1.35
VAMP1-205ENST00000535927 ZEB1P37275 1124 aaPredicted RBP23.47■■□□□ 1.35
VAMP1-205ENST00000535927 HDGFP51858 240 aaKnown RBP23.46■■□□□ 1.35
VAMP1-205ENST00000535927 SIN3AQ96ST3 1273 aa23.46■■□□□ 1.35
VAMP1-205ENST00000535927 A2ML1A8K2U0 1454 aa23.45■■□□□ 1.34
VAMP1-205ENST00000535927 STAG3Q9UJ98 1225 aa23.45■■□□□ 1.34
VAMP1-205ENST00000535927 SPATA31E1Q6ZUB1 1445 aa23.44■■□□□ 1.34
VAMP1-205ENST00000535927 NEUROD1Q13562 356 aa23.44■■□□□ 1.34
VAMP1-205ENST00000535927 THEMISQ8N1K5 641 aaPredicted RBP23.44■■□□□ 1.34
VAMP1-205ENST00000535927 UHRF1BP1Q6BDS2 1440 aa23.42■■□□□ 1.34
VAMP1-205ENST00000535927 TONSLQ96HA7 1378 aa23.41■■□□□ 1.34
VAMP1-205ENST00000535927 TMEM131LA2VDJ0 1609 aa23.41■■□□□ 1.34
VAMP1-205ENST00000535927 ADGRB3O60242 1522 aa23.41■■□□□ 1.34
VAMP1-205ENST00000535927 MYO3AQ8NEV4 1616 aa23.41■■□□□ 1.34
VAMP1-205ENST00000535927 ZNF142P52746 1687 aaPredicted RBP23.4■■□□□ 1.34
VAMP1-205ENST00000535927 UGGT1Q9NYU2 1555 aa23.4■■□□□ 1.34
VAMP1-205ENST00000535927 CHGAP10645 457 aaKnown RBP23.38■■□□□ 1.33
VAMP1-205ENST00000535927 ABCF1Q8NE71 845 aaKnown RBP eCLIP23.38■■□□□ 1.33
VAMP1-205ENST00000535927 CEP170BQ9Y4F5 1589 aaPredicted RBP23.38■■□□□ 1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms