RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 MINK1Q8N4C8 1332 aaPredicted RBP10.58□□□□□ -0.71
USP28-202ENST00000535607 MAP2K5Q13163 448 aa10.58□□□□□ -0.72
USP28-202ENST00000535607 PPP4R3BQ5MIZ7 849 aa10.58□□□□□ -0.72
USP28-202ENST00000535607 ZDHHC16Q969W1 377 aa10.58□□□□□ -0.72
USP28-202ENST00000535607 DAXXQ9UER7 740 aaPredicted RBP10.57□□□□□ -0.72
USP28-202ENST00000535607 FOSBP53539 338 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 PTGDRQ13258 359 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 CERKQ8TCT0 537 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 KHSRPQ92945 711 aaKnown RBP eCLIP10.56□□□□□ -0.72
USP28-202ENST00000535607 KCNH8Q96L42 1107 aa10.56□□□□□ -0.72
USP28-202ENST00000535607 GPR153Q6NV75 609 aa10.55□□□□□ -0.72
USP28-202ENST00000535607 SMARCA4P51532 1647 aa10.55□□□□□ -0.72
USP28-202ENST00000535607 GPR37O15354 613 aa10.54□□□□□ -0.72
USP28-202ENST00000535607 LHX8Q68G74 356 aa10.54□□□□□ -0.72
USP28-202ENST00000535607 BRPF1P55201 1214 aaPredicted RBP10.53□□□□□ -0.72
USP28-202ENST00000535607 LHX6Q9UPM6 363 aa10.52□□□□□ -0.73
USP28-202ENST00000535607 EIF4G1Q04637 1599 aaKnown RBP10.52□□□□□ -0.73
USP28-202ENST00000535607 IRF6O14896 467 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 PRIM1P49642 420 aaKnown RBP10.51□□□□□ -0.73
USP28-202ENST00000535607 TMEM132AQ24JP5 1023 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 TSR1Q2NL82 804 aaKnown RBP10.51□□□□□ -0.73
USP28-202ENST00000535607 C6orf132Q5T0Z8 1188 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 CCDC102AQ96A19 550 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 CDHR5Q9HBB8 845 aa10.51□□□□□ -0.73
USP28-202ENST00000535607 CECR2Q9BXF3 1484 aa10.5□□□□□ -0.73
USP28-202ENST00000535607 KDM4FA0A1W2PPD8 638 aa10.5□□□□□ -0.73
USP28-202ENST00000535607 TRIM66O15016 1216 aa10.5□□□□□ -0.73
USP28-202ENST00000535607 HOXB1P14653 301 aaPredicted RBP10.5□□□□□ -0.73
USP28-202ENST00000535607 PEG3Q9GZU2 1588 aa10.49□□□□□ -0.73
USP28-202ENST00000535607 OTUD5Q96G74 571 aa10.49□□□□□ -0.73
USP28-202ENST00000535607 PTPREP23469 700 aa10.48□□□□□ -0.73
USP28-202ENST00000535607 PDE4DQ08499 809 aa10.48□□□□□ -0.73
USP28-202ENST00000535607 TTLL12Q14166 644 aaPredicted RBP10.48□□□□□ -0.73
USP28-202ENST00000535607 MYT1Q01538 1121 aa10.47□□□□□ -0.73
USP28-202ENST00000535607 ADAM33Q9BZ11 813 aa10.47□□□□□ -0.73
USP28-202ENST00000535607 MROH2BQ7Z745 1585 aa10.47□□□□□ -0.73
USP28-202ENST00000535607 RSF1Q96T23 1441 aaPredicted RBP10.46□□□□□ -0.74
USP28-202ENST00000535607 FECHP22830 423 aa10.45□□□□□ -0.74
USP28-202ENST00000535607 SMARCA2P51531 1590 aa10.44□□□□□ -0.74
USP28-202ENST00000535607 OATP04181 439 aa10.44□□□□□ -0.74
USP28-202ENST00000535607 BCL2L12Q9HB09 334 aa10.44□□□□□ -0.74
USP28-202ENST00000535607 NPDC1Q9NQX5 325 aaPredicted RBP10.44□□□□□ -0.74
USP28-202ENST00000535607 ERBB3P21860 1342 aa10.43□□□□□ -0.74
USP28-202ENST00000535607 RBM27Q9P2N5 1060 aaKnown RBP10.43□□□□□ -0.74
USP28-202ENST00000535607 PADI6Q6TGC4 694 aa10.42□□□□□ -0.74
USP28-202ENST00000535607 KDM4CQ9H3R0 1056 aa10.42□□□□□ -0.74
USP28-202ENST00000535607 GPBP1L1Q9HC44 474 aaPredicted RBP10.42□□□□□ -0.74
USP28-202ENST00000535607 PRSS12P56730 875 aa10.41□□□□□ -0.74
USP28-202ENST00000535607 HMGXB3Q12766 1538 aa10.4□□□□□ -0.74
USP28-202ENST00000535607 PPP1R3GB7ZBB8 358 aa10.4□□□□□ -0.74
USP28-202ENST00000535607 AMHR2Q16671 573 aa10.4□□□□□ -0.74
USP28-202ENST00000535607 RBM46Q8TBY0 533 aaKnown RBP10.4□□□□□ -0.74
USP28-202ENST00000535607 EMP3P54852 163 aa10.39□□□□□ -0.75
USP28-202ENST00000535607 CDCA7LQ96GN5 454 aa10.39□□□□□ -0.75
USP28-202ENST00000535607 KCNK17Q96T54 332 aa10.39□□□□□ -0.75
USP28-202ENST00000535607 ATAD2BQ9ULI0 1458 aa10.38□□□□□ -0.75
USP28-202ENST00000535607 CLCN1P35523 988 aa10.38□□□□□ -0.75
USP28-202ENST00000535607 CC2D2AQ9P2K1 1620 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 PACS2Q86VP3 889 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 DDRGK1Q96HY6 314 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 WIZO95785 1651 aa10.37□□□□□ -0.75
USP28-202ENST00000535607 NBPF26B4DH59 902 aa10.36□□□□□ -0.75
USP28-202ENST00000535607 ZEB1P37275 1124 aaPredicted RBP10.36□□□□□ -0.75
USP28-202ENST00000535607 VARS2Q5ST30 1063 aaKnown RBP10.36□□□□□ -0.75
USP28-202ENST00000535607 NCAPD3P42695 1498 aa10.36□□□□□ -0.75
USP28-202ENST00000535607 TOP2AP11388 1531 aaKnown RBP10.35□□□□□ -0.75
USP28-202ENST00000535607 SUPT5HO00267 1087 aaKnown RBP10.35□□□□□ -0.75
USP28-202ENST00000535607 PARP9Q8IXQ6 854 aa10.35□□□□□ -0.75
USP28-202ENST00000535607 IL27Q8NEV9 243 aa10.35□□□□□ -0.75
USP28-202ENST00000535607 MDM2Q00987 491 aaPredicted RBP10.34□□□□□ -0.75
USP28-202ENST00000535607 FAM163AQ96GL9 167 aaPredicted RBP10.34□□□□□ -0.75
USP28-202ENST00000535607 GPCPD1Q9NPB8 672 aa10.34□□□□□ -0.75
USP28-202ENST00000535607 ST18O60284 1047 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 METTL3Q86U44 580 aaKnown RBP10.33□□□□□ -0.76
USP28-202ENST00000535607 PCGF6Q9BYE7 350 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 GTF3C3Q9Y5Q9 886 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 ADGRG1Q9Y653 693 aa10.33□□□□□ -0.76
USP28-202ENST00000535607 BAZ1BQ9UIG0 1483 aaKnown RBP10.33□□□□□ -0.76
USP28-202ENST00000535607 COL9A1P20849 921 aa10.32□□□□□ -0.76
USP28-202ENST00000535607 FAM161AQ3B820 660 aa10.32□□□□□ -0.76
USP28-202ENST00000535607 GIGYF2Q6Y7W6 1299 aaKnown RBP10.32□□□□□ -0.76
USP28-202ENST00000535607 TRIM6-TRIM34B2RNG4 842 aa10.31□□□□□ -0.76
USP28-202ENST00000535607 ARHGAP33O14559 1287 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 PBX2P40425 430 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 PXYLP1Q8TE99 480 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 PNMA3Q9UL41 463 aa10.3□□□□□ -0.76
USP28-202ENST00000535607 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.29□□□□□ -0.76
USP28-202ENST00000535607 FAM205CA6NFA0 338 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 ERICH6Q7L0X2 663 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 TTC13Q8NBP0 860 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 MARVELD3Q96A59 401 aa10.29□□□□□ -0.76
USP28-202ENST00000535607 ATP1B4Q9UN42 357 aaPredicted RBP10.29□□□□□ -0.76
USP28-202ENST00000535607 ONECUT3O60422 494 aaPredicted RBP10.28□□□□□ -0.76
USP28-202ENST00000535607 SLC4A3P48751 1232 aa10.28□□□□□ -0.76
USP28-202ENST00000535607 NUDT18Q6ZVK8 323 aa10.28□□□□□ -0.76
USP28-202ENST00000535607 HDGFP51858 240 aaKnown RBP10.27□□□□□ -0.77
USP28-202ENST00000535607 TATDN2Q93075 761 aa10.27□□□□□ -0.77
USP28-202ENST00000535607 FAM117AQ9C073 453 aa10.27□□□□□ -0.77
USP28-202ENST00000535607 TSKSQ9UJT2 592 aa10.27□□□□□ -0.77
USP28-202ENST00000535607 DNAJB2P25686 324 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms