RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 PBRM1Q86U86 1689 aa17.74■□□□□ 0.43
HDAC4-214ENST00000535493 ADAMTS12P58397 1594 aa17.74■□□□□ 0.43
HDAC4-214ENST00000535493 KIF14Q15058 1648 aa17.74■□□□□ 0.43
HDAC4-214ENST00000535493 KIAA0586Q9BVV6 1533 aa17.74■□□□□ 0.43
HDAC4-214ENST00000535493 TROQ12816 1431 aaPredicted RBP17.73■□□□□ 0.43
HDAC4-214ENST00000535493 KTN1Q86UP2 1357 aaKnown RBP17.73■□□□□ 0.43
HDAC4-214ENST00000535493 TSPY4P0CV99 314 aa17.73■□□□□ 0.43
HDAC4-214ENST00000535493 TSPY10P0CW01 314 aa17.73■□□□□ 0.43
HDAC4-214ENST00000535493 RALGAPBQ86X10 1494 aa17.73■□□□□ 0.43
HDAC4-214ENST00000535493 PER1O15534 1290 aaPredicted RBP17.72■□□□□ 0.43
HDAC4-214ENST00000535493 PANK3Q9H999 370 aa17.71■□□□□ 0.43
HDAC4-214ENST00000535493 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.71■□□□□ 0.43
HDAC4-214ENST00000535493 KIAA0556O60303 1618 aa17.7■□□□□ 0.42
HDAC4-214ENST00000535493 UHRF1BP1Q6BDS2 1440 aa17.7■□□□□ 0.42
HDAC4-214ENST00000535493 RAPGEF6Q8TEU7 1601 aa17.69■□□□□ 0.42
HDAC4-214ENST00000535493 CHMP7Q8WUX9 453 aaPredicted RBP17.68■□□□□ 0.42
HDAC4-214ENST00000535493 PLEKHD1A6NEE1 506 aa17.68■□□□□ 0.42
HDAC4-214ENST00000535493 BRPF3Q9ULD4 1205 aa17.68■□□□□ 0.42
HDAC4-214ENST00000535493 ADAMTS8Q9UP79 889 aa17.68■□□□□ 0.42
HDAC4-214ENST00000535493 PARD3Q8TEW0 1356 aa17.67■□□□□ 0.42
HDAC4-214ENST00000535493 DISP3Q9P2K9 1392 aa17.66■□□□□ 0.42
HDAC4-214ENST00000535493 C9orf84Q5VXU9 1444 aa17.66■□□□□ 0.42
HDAC4-214ENST00000535493 MS4A1P11836 297 aa17.66■□□□□ 0.42
HDAC4-214ENST00000535493 PDE3BQ13370 1112 aa17.66■□□□□ 0.42
HDAC4-214ENST00000535493 RGS3P49796 1198 aa17.64■□□□□ 0.42
HDAC4-214ENST00000535493 PRKCSHP14314 528 aaPredicted RBP17.63■□□□□ 0.41
HDAC4-214ENST00000535493 ADGRL2O95490 1459 aa17.63■□□□□ 0.41
HDAC4-214ENST00000535493 NFKBIBQ15653 356 aa17.62■□□□□ 0.41
HDAC4-214ENST00000535493 JPH4Q96JJ6 628 aa17.62■□□□□ 0.41
HDAC4-214ENST00000535493 TESK2Q96S53 571 aa17.62■□□□□ 0.41
HDAC4-214ENST00000535493 PPM1GO15355 546 aaPredicted RBP17.61■□□□□ 0.41
HDAC4-214ENST00000535493 ADGBQ8N7X0 1667 aa17.59■□□□□ 0.41
HDAC4-214ENST00000535493 CCDC146Q8IYE0 955 aa17.59■□□□□ 0.41
HDAC4-214ENST00000535493 USP35Q9P2H5 1018 aa17.59■□□□□ 0.41
HDAC4-214ENST00000535493 DAXXQ9UER7 740 aaPredicted RBP17.59■□□□□ 0.41
HDAC4-214ENST00000535493 GRIN2AQ12879 1464 aa17.58■□□□□ 0.41
HDAC4-214ENST00000535493 CCDC144AA2RUR9 1427 aa17.57■□□□□ 0.4
HDAC4-214ENST00000535493 FRAT1Q92837 279 aaPredicted RBP17.57■□□□□ 0.4
HDAC4-214ENST00000535493 PRAG1Q86YV5 1406 aa17.57■□□□□ 0.4
HDAC4-214ENST00000535493 GSE1Q14687 1217 aa17.56■□□□□ 0.4
HDAC4-214ENST00000535493 PLEKHH1Q9ULM0 1364 aa17.56■□□□□ 0.4
HDAC4-214ENST00000535493 ARHGEF12Q9NZN5 1544 aa17.55■□□□□ 0.4
HDAC4-214ENST00000535493 DUSP27Q5VZP5 1158 aa17.55■□□□□ 0.4
HDAC4-214ENST00000535493 DDRGK1Q96HY6 314 aa17.54■□□□□ 0.4
HDAC4-214ENST00000535493 KDM2BQ8NHM5 1336 aa17.54■□□□□ 0.4
HDAC4-214ENST00000535493 WASHC2CQ9Y4E1 1318 aa17.54■□□□□ 0.4
HDAC4-214ENST00000535493 MRC2Q9UBG0 1479 aa17.54■□□□□ 0.4
HDAC4-214ENST00000535493 FRAT2O75474 233 aaPredicted RBP17.54■□□□□ 0.4
HDAC4-214ENST00000535493 WDR43Q15061 677 aaKnown RBP eCLIP17.54■□□□□ 0.4
HDAC4-214ENST00000535493 C8orf34Q49A92 452 aa17.54■□□□□ 0.4
HDAC4-214ENST00000535493 SPINK5Q9NQ38 1064 aaPredicted RBP17.54■□□□□ 0.4
HDAC4-214ENST00000535493 ITSN2Q9NZM3 1697 aa17.53■□□□□ 0.4
HDAC4-214ENST00000535493 TMF1P82094 1093 aa17.53■□□□□ 0.4
HDAC4-214ENST00000535493 CROCC2H7BZ55 1655 aa17.53■□□□□ 0.4
HDAC4-214ENST00000535493 E9PCH4 1651 aa17.52■□□□□ 0.4
HDAC4-214ENST00000535493 BCAR3O75815 825 aa17.51■□□□□ 0.39
HDAC4-214ENST00000535493 CEP170Q5SW79 1584 aa17.51■□□□□ 0.39
HDAC4-214ENST00000535493 KDM5DQ9BY66 1539 aa17.51■□□□□ 0.39
HDAC4-214ENST00000535493 PPP2R1AP30153 589 aa17.51■□□□□ 0.39
HDAC4-214ENST00000535493 KNSTRNQ9Y448 316 aa17.5■□□□□ 0.39
HDAC4-214ENST00000535493 BLMP54132 1417 aaPredicted RBP17.5■□□□□ 0.39
HDAC4-214ENST00000535493 ATP10BO94823 1461 aa17.5■□□□□ 0.39
HDAC4-214ENST00000535493 MAGI1Q96QZ7 1491 aaPredicted RBP17.5■□□□□ 0.39
HDAC4-214ENST00000535493 ERBINQ96RT1 1412 aa17.49■□□□□ 0.39
HDAC4-214ENST00000535493 CENPQQ7L2Z9 268 aaPredicted RBP17.49■□□□□ 0.39
HDAC4-214ENST00000535493 CDC42BPAQ5VT25 1732 aa17.49■□□□□ 0.39
HDAC4-214ENST00000535493 FAM135AQ9P2D6 1515 aa17.49■□□□□ 0.39
HDAC4-214ENST00000535493 FAM161AQ3B820 660 aa17.49■□□□□ 0.39
HDAC4-214ENST00000535493 PLA2R1Q13018 1463 aa17.49■□□□□ 0.39
HDAC4-214ENST00000535493 GOLGA2Q08379 1002 aa17.49■□□□□ 0.39
HDAC4-214ENST00000535493 A2MP01023 1474 aa17.48■□□□□ 0.39
HDAC4-214ENST00000535493 IFT140Q96RY7 1462 aa17.47■□□□□ 0.39
HDAC4-214ENST00000535493 COL17A1Q9UMD9 1497 aaPredicted RBP17.47■□□□□ 0.39
HDAC4-214ENST00000535493 APAF1O14727 1248 aa17.47■□□□□ 0.39
HDAC4-214ENST00000535493 DMRT2Q9Y5R5 561 aa17.47■□□□□ 0.39
HDAC4-214ENST00000535493 PTPRGP23470 1445 aa17.47■□□□□ 0.39
HDAC4-214ENST00000535493 ABCC10Q5T3U5 1492 aa17.46■□□□□ 0.39
HDAC4-214ENST00000535493 CARMIL2Q6F5E8 1435 aa17.46■□□□□ 0.39
HDAC4-214ENST00000535493 TRPM1Q7Z4N2 1603 aa17.45■□□□□ 0.38
HDAC4-214ENST00000535493 IGHDP01880 384 aa17.44■□□□□ 0.38
HDAC4-214ENST00000535493 MAGI2Q86UL8 1455 aa17.44■□□□□ 0.38
HDAC4-214ENST00000535493 SEC24BO95487 1268 aa17.44■□□□□ 0.38
HDAC4-214ENST00000535493 ZMYM4Q5VZL5 1548 aa17.43■□□□□ 0.38
HDAC4-214ENST00000535493 EIF5BO60841 1220 aaKnown RBP17.43■□□□□ 0.38
HDAC4-214ENST00000535493 AMER1Q5JTC6 1135 aaPredicted RBP17.43■□□□□ 0.38
HDAC4-214ENST00000535493 EIF4G3O43432 1585 aaKnown RBP17.42■□□□□ 0.38
HDAC4-214ENST00000535493 SHANK2Q9UPX8 1470 aa17.42■□□□□ 0.38
HDAC4-214ENST00000535493 SLFN5Q08AF3 891 aa17.41■□□□□ 0.38
HDAC4-214ENST00000535493 GPRASP1Q5JY77 1395 aa17.41■□□□□ 0.38
HDAC4-214ENST00000535493 NEUROD2Q15784 382 aa17.41■□□□□ 0.38
HDAC4-214ENST00000535493 ARXQ96QS3 562 aa17.41■□□□□ 0.38
HDAC4-214ENST00000535493 ADCY10Q96PN6 1610 aa17.4■□□□□ 0.38
HDAC4-214ENST00000535493 PLEKHH2Q8IVE3 1493 aa17.4■□□□□ 0.38
HDAC4-214ENST00000535493 ZNF521Q96K83 1311 aa17.4■□□□□ 0.38
HDAC4-214ENST00000535493 SLKQ9H2G2 1235 aaPredicted RBP17.4■□□□□ 0.38
HDAC4-214ENST00000535493 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.39■□□□□ 0.37
HDAC4-214ENST00000535493 PANK1Q8TE04 598 aa17.39■□□□□ 0.37
HDAC4-214ENST00000535493 COG6Q9Y2V7 657 aa17.38■□□□□ 0.37
HDAC4-214ENST00000535493 TNNT2P45379 298 aaPredicted RBP17.37■□□□□ 0.37
HDAC4-214ENST00000535493 CCDC141Q6ZP82 1450 aa17.37■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms