RNA–Protein interactions for RNA: ENST00000533012.1

TRAPPC4-211, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 817 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-211ENST00000533012 BCORL1Q5H9F3 1711 aa16.81■□□□□ 0.28
TRAPPC4-211ENST00000533012 KANK1Q14678 1352 aa16.79■□□□□ 0.28
TRAPPC4-211ENST00000533012 EIF2AK4Q9P2K8 1649 aaKnown RBP16.79■□□□□ 0.28
TRAPPC4-211ENST00000533012 CNTLNQ9NXG0 1405 aa16.78■□□□□ 0.28
TRAPPC4-211ENST00000533012 ADAMTSL3P82987 1691 aa16.77■□□□□ 0.28
TRAPPC4-211ENST00000533012 SETD5Q9C0A6 1442 aa16.77■□□□□ 0.27
TRAPPC4-211ENST00000533012 ACIN1Q9UKV3 1341 aaKnown RBP16.76■□□□□ 0.27
TRAPPC4-211ENST00000533012 PLPPR3Q6T4P5 718 aa16.76■□□□□ 0.27
TRAPPC4-211ENST00000533012 TRIM52Q96A61 297 aa16.76■□□□□ 0.27
TRAPPC4-211ENST00000533012 ZMYM3Q14202 1370 aa16.76■□□□□ 0.27
TRAPPC4-211ENST00000533012 NUP155O75694 1391 aa16.75■□□□□ 0.27
TRAPPC4-211ENST00000533012 CEBPAP49715 358 aaPredicted RBP16.74■□□□□ 0.27
TRAPPC4-211ENST00000533012 MADDQ8WXG6 1647 aa16.74■□□□□ 0.27
TRAPPC4-211ENST00000533012 RNF17Q9BXT8 1623 aaKnown RBP16.73■□□□□ 0.27
TRAPPC4-211ENST00000533012 HRCP23327 699 aa16.72■□□□□ 0.27
TRAPPC4-211ENST00000533012 PTPRMP28827 1452 aa16.72■□□□□ 0.27
TRAPPC4-211ENST00000533012 KDM5DQ9BY66 1539 aa16.7■□□□□ 0.26
TRAPPC4-211ENST00000533012 FAM135AQ9P2D6 1515 aa16.7■□□□□ 0.26
TRAPPC4-211ENST00000533012 RAB3GAP2Q9H2M9 1393 aa16.7■□□□□ 0.26
TRAPPC4-211ENST00000533012 PRDM15P57071 1507 aaPredicted RBP16.7■□□□□ 0.26
TRAPPC4-211ENST00000533012 GCC2Q8IWJ2 1684 aa16.69■□□□□ 0.26
TRAPPC4-211ENST00000533012 DEPDC5O75140 1603 aa16.69■□□□□ 0.26
TRAPPC4-211ENST00000533012 MROH1Q8NDA8 1641 aa16.69■□□□□ 0.26
TRAPPC4-211ENST00000533012 FER1L4A9Z1Z3 1794 aa16.69■□□□□ 0.26
TRAPPC4-211ENST00000533012 ABCC3O15438 1527 aa16.68■□□□□ 0.26
TRAPPC4-211ENST00000533012 RIMS1Q86UR5 1692 aaKnown RBP16.68■□□□□ 0.26
TRAPPC4-211ENST00000533012 PCGF6Q9BYE7 350 aa16.67■□□□□ 0.26
TRAPPC4-211ENST00000533012 CLTCQ00610 1675 aaKnown RBP16.66■□□□□ 0.26
TRAPPC4-211ENST00000533012 UNC13BO14795 1591 aa16.66■□□□□ 0.26
TRAPPC4-211ENST00000533012 FBXO31Q5XUX0 539 aaPredicted RBP16.66■□□□□ 0.26
TRAPPC4-211ENST00000533012 SLC4A1APQ9BWU0 796 aaKnown RBP16.66■□□□□ 0.26
TRAPPC4-211ENST00000533012 VWDEQ8N2E2 1590 aa16.65■□□□□ 0.26
TRAPPC4-211ENST00000533012 LMTK2Q8IWU2 1503 aa16.65■□□□□ 0.26
TRAPPC4-211ENST00000533012 ARHGAP31Q2M1Z3 1444 aa16.63■□□□□ 0.25
TRAPPC4-211ENST00000533012 ZC3H13Q5T200 1668 aaKnown RBP16.63■□□□□ 0.25
TRAPPC4-211ENST00000533012 MPHOSPH9Q99550 1183 aa16.63■□□□□ 0.25
TRAPPC4-211ENST00000533012 MROH2AA6NES4 1674 aa16.62■□□□□ 0.25
TRAPPC4-211ENST00000533012 PZPP20742 1482 aa16.62■□□□□ 0.25
TRAPPC4-211ENST00000533012 NPATQ14207 1427 aa16.62■□□□□ 0.25
TRAPPC4-211ENST00000533012 PKD2Q13563 968 aa16.61■□□□□ 0.25
TRAPPC4-211ENST00000533012 IQGAP3Q86VI3 1631 aa16.59■□□□□ 0.25
TRAPPC4-211ENST00000533012 C3P01024 1663 aa16.59■□□□□ 0.25
TRAPPC4-211ENST00000533012 CEP152O94986 1710 aa16.59■□□□□ 0.25
TRAPPC4-211ENST00000533012 TNRQ92752 1358 aa16.58■□□□□ 0.24
TRAPPC4-211ENST00000533012 RPRD2Q5VT52 1461 aaKnown RBP16.58■□□□□ 0.24
TRAPPC4-211ENST00000533012 CAMSAP1Q5T5Y3 1602 aa16.58■□□□□ 0.24
TRAPPC4-211ENST00000533012 EFCAB6Q5THR3 1501 aa16.57■□□□□ 0.24
TRAPPC4-211ENST00000533012 TET3O43151 1660 aa16.56■□□□□ 0.24
TRAPPC4-211ENST00000533012 ERVK-7P63135 1459 aa16.55■□□□□ 0.24
TRAPPC4-211ENST00000533012 SLC52A1Q9NWF4 448 aa16.55■□□□□ 0.24
TRAPPC4-211ENST00000533012 FOXD1Q16676 465 aa16.54■□□□□ 0.24
TRAPPC4-211ENST00000533012 NOS1P29475 1434 aa16.53■□□□□ 0.24
TRAPPC4-211ENST00000533012 UHRF1BP1Q6BDS2 1440 aa16.53■□□□□ 0.24
TRAPPC4-211ENST00000533012 SPATA31D1Q6ZQQ2 1576 aa16.52■□□□□ 0.24
TRAPPC4-211ENST00000533012 IDI1Q13907 227 aa16.52■□□□□ 0.24
TRAPPC4-211ENST00000533012 STAG3Q9UJ98 1225 aa16.51■□□□□ 0.23
TRAPPC4-211ENST00000533012 E9PCH4 1651 aa16.5■□□□□ 0.23
TRAPPC4-211ENST00000533012 SETD1BQ9UPS6 1966 aaKnown RBP16.49■□□□□ 0.23
TRAPPC4-211ENST00000533012 NLRP1Q9C000 1473 aa16.49■□□□□ 0.23
TRAPPC4-211ENST00000533012 PTPRTO14522 1441 aa16.49■□□□□ 0.23
TRAPPC4-211ENST00000533012 THEMISQ8N1K5 641 aaPredicted RBP16.49■□□□□ 0.23
TRAPPC4-211ENST00000533012 PREX1Q8TCU6 1659 aa16.48■□□□□ 0.23
TRAPPC4-211ENST00000533012 CHGAP10645 457 aaKnown RBP16.47■□□□□ 0.23
TRAPPC4-211ENST00000533012 HSPA2P54652 639 aa16.46■□□□□ 0.23
TRAPPC4-211ENST00000533012 CFAP65Q6ZU64 1925 aaKnown RBP16.46■□□□□ 0.23
TRAPPC4-211ENST00000533012 A2ML1A8K2U0 1454 aa16.46■□□□□ 0.23
TRAPPC4-211ENST00000533012 LMTK3Q96Q04 1460 aa16.45■□□□□ 0.22
TRAPPC4-211ENST00000533012 PLA2R1Q13018 1463 aa16.44■□□□□ 0.22
TRAPPC4-211ENST00000533012 SYNMO15061 1565 aa16.43■□□□□ 0.22
TRAPPC4-211ENST00000533012 MYO3AQ8NEV4 1616 aa16.42■□□□□ 0.22
TRAPPC4-211ENST00000533012 CCDC144AA2RUR9 1427 aa16.42■□□□□ 0.22
TRAPPC4-211ENST00000533012 UGGT1Q9NYU2 1555 aa16.42■□□□□ 0.22
TRAPPC4-211ENST00000533012 CEP170BQ9Y4F5 1589 aaPredicted RBP16.42■□□□□ 0.22
TRAPPC4-211ENST00000533012 ANKRD30BQ9BXX2 1392 aa16.41■□□□□ 0.22
TRAPPC4-211ENST00000533012 TRPM2O94759 1503 aa16.4■□□□□ 0.22
TRAPPC4-211ENST00000533012 DHX57Q6P158 1386 aaKnown RBP16.4■□□□□ 0.22
TRAPPC4-211ENST00000533012 HDGFP51858 240 aaKnown RBP16.4■□□□□ 0.22
TRAPPC4-211ENST00000533012 ANKLE2Q86XL3 938 aa16.4■□□□□ 0.22
TRAPPC4-211ENST00000533012 ZNF326Q5BKZ1 582 aaKnown RBP16.39■□□□□ 0.21
TRAPPC4-211ENST00000533012 SPHKAPQ2M3C7 1700 aa16.39■□□□□ 0.21
TRAPPC4-211ENST00000533012 TXNDC2Q86VQ3 553 aa16.38■□□□□ 0.21
TRAPPC4-211ENST00000533012 EID1Q9Y6B2 187 aa16.38■□□□□ 0.21
TRAPPC4-211ENST00000533012 PIK3C2BO00750 1634 aa16.37■□□□□ 0.21
TRAPPC4-211ENST00000533012 TMEM2Q9UHN6 1383 aa16.37■□□□□ 0.21
TRAPPC4-211ENST00000533012 RGL3Q3MIN7 710 aa16.36■□□□□ 0.21
TRAPPC4-211ENST00000533012 NCKAP5LQ9HCH0 1330 aa16.36■□□□□ 0.21
TRAPPC4-211ENST00000533012 ZNF142P52746 1687 aaPredicted RBP16.35■□□□□ 0.21
TRAPPC4-211ENST00000533012 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.35■□□□□ 0.21
TRAPPC4-211ENST00000533012 ADGRB3O60242 1522 aa16.35■□□□□ 0.21
TRAPPC4-211ENST00000533012 DMRT2Q9Y5R5 561 aa16.34■□□□□ 0.21
TRAPPC4-211ENST00000533012 CLTCL1P53675 1640 aa16.34■□□□□ 0.21
TRAPPC4-211ENST00000533012 LTKP29376 864 aa16.33■□□□□ 0.2
TRAPPC4-211ENST00000533012 RPGRIP1LQ68CZ1 1315 aa16.33■□□□□ 0.2
TRAPPC4-211ENST00000533012 TMEM131LA2VDJ0 1609 aa16.32■□□□□ 0.2
TRAPPC4-211ENST00000533012 PPP1R15AO75807 674 aaPredicted RBP16.32■□□□□ 0.2
TRAPPC4-211ENST00000533012 NEUROD1Q13562 356 aa16.32■□□□□ 0.2
TRAPPC4-211ENST00000533012 UBR1Q8IWV7 1749 aa16.32■□□□□ 0.2
TRAPPC4-211ENST00000533012 CCER1Q8TC90 406 aaPredicted RBP16.32■□□□□ 0.2
TRAPPC4-211ENST00000533012 SIN3AQ96ST3 1273 aa16.32■□□□□ 0.2
TRAPPC4-211ENST00000533012 KDM5AP29375 1690 aaKnown RBP16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms