RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 DNMT1P26358 1616 aaKnown RBP20.73■□□□□ 0.91
VPS28-211ENST00000530790 RNF17Q9BXT8 1623 aaKnown RBP20.72■□□□□ 0.91
VPS28-211ENST00000530790 ABCC5O15440 1437 aa20.71■□□□□ 0.91
VPS28-211ENST00000530790 DAPK1P53355 1430 aa20.71■□□□□ 0.91
VPS28-211ENST00000530790 ZNF142P52746 1687 aaPredicted RBP20.71■□□□□ 0.91
VPS28-211ENST00000530790 DUOX2Q9NRD8 1548 aa20.71■□□□□ 0.91
VPS28-211ENST00000530790 ILDR1Q86SU0 546 aaPredicted RBP20.7■□□□□ 0.9
VPS28-211ENST00000530790 STRCQ7RTU9 1775 aa20.69■□□□□ 0.9
VPS28-211ENST00000530790 WASHC2CQ9Y4E1 1318 aa20.69■□□□□ 0.9
VPS28-211ENST00000530790 PZPP20742 1482 aa20.69■□□□□ 0.9
VPS28-211ENST00000530790 CEP170BQ9Y4F5 1589 aaPredicted RBP20.68■□□□□ 0.9
VPS28-211ENST00000530790 KIF15Q9NS87 1388 aa20.68■□□□□ 0.9
VPS28-211ENST00000530790 ZC3H13Q5T200 1668 aaKnown RBP20.67■□□□□ 0.9
VPS28-211ENST00000530790 DMRT2Q9Y5R5 561 aa20.67■□□□□ 0.9
VPS28-211ENST00000530790 NCOA1Q15788 1441 aa20.67■□□□□ 0.9
VPS28-211ENST00000530790 ERBINQ96RT1 1412 aa20.66■□□□□ 0.9
VPS28-211ENST00000530790 CAMSAP1Q5T5Y3 1602 aa20.66■□□□□ 0.9
VPS28-211ENST00000530790 MROH1Q8NDA8 1641 aa20.64■□□□□ 0.9
VPS28-211ENST00000530790 ABCC3O15438 1527 aa20.64■□□□□ 0.9
VPS28-211ENST00000530790 PTPRTO14522 1441 aa20.62■□□□□ 0.89
VPS28-211ENST00000530790 TNRQ92752 1358 aa20.62■□□□□ 0.89
VPS28-211ENST00000530790 A2ML1A8K2U0 1454 aa20.62■□□□□ 0.89
VPS28-211ENST00000530790 ANKRD30AQ9BXX3 1397 aa20.61■□□□□ 0.89
VPS28-211ENST00000530790 RRP7BPQ9NSQ0 103 aa20.61■□□□□ 0.89
VPS28-211ENST00000530790 PRDM15P57071 1507 aaPredicted RBP20.61■□□□□ 0.89
VPS28-211ENST00000530790 PLA2R1Q13018 1463 aa20.61■□□□□ 0.89
VPS28-211ENST00000530790 FAM50AQ14320 339 aaKnown RBP20.59■□□□□ 0.89
VPS28-211ENST00000530790 FBXO41Q8TF61 875 aa20.59■□□□□ 0.89
VPS28-211ENST00000530790 FBXO31Q5XUX0 539 aaPredicted RBP20.58■□□□□ 0.89
VPS28-211ENST00000530790 ADGRL2O95490 1459 aa20.57■□□□□ 0.88
VPS28-211ENST00000530790 CEP152O94986 1710 aa20.57■□□□□ 0.88
VPS28-211ENST00000530790 CHIC2Q9UKJ5 165 aa20.57■□□□□ 0.88
VPS28-211ENST00000530790 DEPDC5O75140 1603 aa20.56■□□□□ 0.88
VPS28-211ENST00000530790 NLRP1Q9C000 1473 aa20.56■□□□□ 0.88
VPS28-211ENST00000530790 SPATA31D1Q6ZQQ2 1576 aa20.55■□□□□ 0.88
VPS28-211ENST00000530790 ERVK-7P63135 1459 aa20.54■□□□□ 0.88
VPS28-211ENST00000530790 PKD2Q13563 968 aa20.53■□□□□ 0.88
VPS28-211ENST00000530790 CERKQ8TCT0 537 aa20.53■□□□□ 0.88
VPS28-211ENST00000530790 KANK1Q14678 1352 aa20.52■□□□□ 0.88
VPS28-211ENST00000530790 NCKAP5LQ9HCH0 1330 aa20.52■□□□□ 0.87
VPS28-211ENST00000530790 UGGT1Q9NYU2 1555 aa20.5■□□□□ 0.87
VPS28-211ENST00000530790 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.49■□□□□ 0.879e-9■■■□□ 15.1
VPS28-211ENST00000530790 ARHGAP31Q2M1Z3 1444 aa20.49■□□□□ 0.87
VPS28-211ENST00000530790 POLR1AO95602 1720 aaPredicted RBP20.47■□□□□ 0.87
VPS28-211ENST00000530790 LMTK2Q8IWU2 1503 aa20.47■□□□□ 0.87
VPS28-211ENST00000530790 VWDEQ8N2E2 1590 aa20.46■□□□□ 0.87
VPS28-211ENST00000530790 ANKRD50Q9ULJ7 1429 aa20.46■□□□□ 0.87
VPS28-211ENST00000530790 PPARGC1BQ86YN6 1023 aaKnown RBP20.45■□□□□ 0.86
VPS28-211ENST00000530790 LTBP4Q8N2S1 1624 aa20.45■□□□□ 0.86
VPS28-211ENST00000530790 THEMISQ8N1K5 641 aaPredicted RBP20.44■□□□□ 0.86
VPS28-211ENST00000530790 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.44■□□□□ 0.865e-6■■■□□ 14.8
VPS28-211ENST00000530790 NEURL4Q96JN8 1562 aa20.43■□□□□ 0.86
VPS28-211ENST00000530790 ROCK1Q13464 1354 aa20.42■□□□□ 0.86
VPS28-211ENST00000530790 EFCAB6Q5THR3 1501 aa20.42■□□□□ 0.86
VPS28-211ENST00000530790 ANKLE2Q86XL3 938 aa20.4■□□□□ 0.86
VPS28-211ENST00000530790 ZNF335Q9H4Z2 1342 aaPredicted RBP20.39■□□□□ 0.85
VPS28-211ENST00000530790 UBR1Q8IWV7 1749 aa20.39■□□□□ 0.85
VPS28-211ENST00000530790 IQSEC2Q5JU85 1478 aa20.38■□□□□ 0.85
VPS28-211ENST00000530790 UNC13BO14795 1591 aa20.38■□□□□ 0.85
VPS28-211ENST00000530790 ITGAEP38570 1179 aa20.36■□□□□ 0.85
VPS28-211ENST00000530790 MED14O60244 1454 aa20.36■□□□□ 0.85
VPS28-211ENST00000530790 NPHP4O75161 1426 aaPredicted RBP20.36■□□□□ 0.85
VPS28-211ENST00000530790 CFAP65Q6ZU64 1925 aaKnown RBP20.35■□□□□ 0.85
VPS28-211ENST00000530790 PIK3C2BO00750 1634 aa20.35■□□□□ 0.85
VPS28-211ENST00000530790 RPRD2Q5VT52 1461 aaKnown RBP20.34■□□□□ 0.85
VPS28-211ENST00000530790 TET3O43151 1660 aa20.34■□□□□ 0.85
VPS28-211ENST00000530790 IQGAP1P46940 1657 aa20.34■□□□□ 0.85
VPS28-211ENST00000530790 RRBP1Q9P2E9 1410 aaKnown RBP20.34■□□□□ 0.85
VPS28-211ENST00000530790 SYNMO15061 1565 aa20.34■□□□□ 0.85
VPS28-211ENST00000530790 NOS1P29475 1434 aa20.32■□□□□ 0.84
VPS28-211ENST00000530790 SLIT1O75093 1534 aa20.32■□□□□ 0.84
VPS28-211ENST00000530790 SCAF11Q99590 1463 aaKnown RBP20.31■□□□□ 0.84
VPS28-211ENST00000530790 ARHGAP23Q9P227 1491 aa20.3■□□□□ 0.84
VPS28-211ENST00000530790 KDM5AP29375 1690 aaKnown RBP20.3■□□□□ 0.84
VPS28-211ENST00000530790 GCC2Q8IWJ2 1684 aa20.3■□□□□ 0.84
VPS28-211ENST00000530790 CPS1P31327 1500 aa20.29■□□□□ 0.84
VPS28-211ENST00000530790 STAG3Q9UJ98 1225 aa20.29■□□□□ 0.84
VPS28-211ENST00000530790 ADGRB3O60242 1522 aa20.28■□□□□ 0.84
VPS28-211ENST00000530790 IQGAP3Q86VI3 1631 aa20.28■□□□□ 0.84
VPS28-211ENST00000530790 TMEM2Q9UHN6 1383 aa20.25■□□□□ 0.83
VPS28-211ENST00000530790 IDI1Q13907 227 aa20.24■□□□□ 0.83
VPS28-211ENST00000530790 SLC52A1Q9NWF4 448 aa20.24■□□□□ 0.83
VPS28-211ENST00000530790 EID1Q9Y6B2 187 aa20.24■□□□□ 0.83
VPS28-211ENST00000530790 TXNDC2Q86VQ3 553 aa20.23■□□□□ 0.83
VPS28-211ENST00000530790 E9PCH4 1651 aa20.22■□□□□ 0.83
VPS28-211ENST00000530790 NUP155O75694 1391 aa20.22■□□□□ 0.83
VPS28-211ENST00000530790 LTKP29376 864 aa20.22■□□□□ 0.83
VPS28-211ENST00000530790 UBAP1LF5GYI3 381 aa20.18■□□□□ 0.82
VPS28-211ENST00000530790 NAIPQ13075 1403 aa20.17■□□□□ 0.82
VPS28-211ENST00000530790 TMEM131LA2VDJ0 1609 aa20.15■□□□□ 0.82
VPS28-211ENST00000530790 STRCP1A6NGW2 1772 aa20.14■□□□□ 0.81
VPS28-211ENST00000530790 HFM1A2PYH4 1435 aa20.13■□□□□ 0.81
VPS28-211ENST00000530790 LRRC7Q96NW7 1537 aa20.12■□□□□ 0.81
VPS28-211ENST00000530790 ZFYVE9O95405 1425 aa20.11■□□□□ 0.81
VPS28-211ENST00000530790 MYO5BQ9ULV0 1848 aa20.11■□□□□ 0.81
VPS28-211ENST00000530790 RIMS2Q9UQ26 1411 aa20.1■□□□□ 0.81
VPS28-211ENST00000530790 CHGAP10645 457 aaKnown RBP20.1■□□□□ 0.81
VPS28-211ENST00000530790 SPHKAPQ2M3C7 1700 aa20.1■□□□□ 0.81
VPS28-211ENST00000530790 PPP1R15AO75807 674 aaPredicted RBP20.09■□□□□ 0.81
VPS28-211ENST00000530790 TOM1O60784 492 aa20.08■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms