RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 VPS8Q8N3P4 1428 aa19.17■□□□□ 0.66
USH1C-208ENST00000529563 TNRQ92752 1358 aa19.16■□□□□ 0.66
USH1C-208ENST00000529563 A2ML1A8K2U0 1454 aa19.16■□□□□ 0.66
USH1C-208ENST00000529563 IQSEC2Q5JU85 1478 aa19.16■□□□□ 0.66
USH1C-208ENST00000529563 KDM5DQ9BY66 1539 aa19.15■□□□□ 0.66
USH1C-208ENST00000529563 UBAP1LF5GYI3 381 aa19.14■□□□□ 0.65
USH1C-208ENST00000529563 FBXO31Q5XUX0 539 aaPredicted RBP19.14■□□□□ 0.65
USH1C-208ENST00000529563 LRRC9Q6ZRR7 1453 aa19.14■□□□□ 0.65
USH1C-208ENST00000529563 ARHGEF5Q12774 1597 aa19.12■□□□□ 0.65
USH1C-208ENST00000529563 TCOF1Q13428 1488 aaKnown RBP19.12■□□□□ 0.65
USH1C-208ENST00000529563 APLP2Q06481 763 aa19.12■□□□□ 0.65
USH1C-208ENST00000529563 FAM135AQ9P2D6 1515 aa19.11■□□□□ 0.65
USH1C-208ENST00000529563 PZPP20742 1482 aa19.1■□□□□ 0.65
USH1C-208ENST00000529563 DNMT1P26358 1616 aaKnown RBP19.1■□□□□ 0.65
USH1C-208ENST00000529563 ANKLE2Q86XL3 938 aa19.08■□□□□ 0.64
USH1C-208ENST00000529563 THEMISQ8N1K5 641 aaPredicted RBP19.08■□□□□ 0.64
USH1C-208ENST00000529563 SCAF1Q9H7N4 1312 aaKnown RBP19.07■□□□□ 0.64
USH1C-208ENST00000529563 KANK4Q5T7N3 995 aaPredicted RBP19.07■□□□□ 0.64
USH1C-208ENST00000529563 MYOM3Q5VTT5 1437 aa19.05■□□□□ 0.64
USH1C-208ENST00000529563 MIA2Q96PC5 1412 aa19.05■□□□□ 0.64
USH1C-208ENST00000529563 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.05■□□□□ 0.64
USH1C-208ENST00000529563 NLRP1Q9C000 1473 aa19.03■□□□□ 0.64
USH1C-208ENST00000529563 POLR1AO95602 1720 aaPredicted RBP19.03■□□□□ 0.64
USH1C-208ENST00000529563 SPATA31D1Q6ZQQ2 1576 aa19.03■□□□□ 0.64
USH1C-208ENST00000529563 MAP3K1Q13233 1512 aa19.03■□□□□ 0.64
USH1C-208ENST00000529563 UGGT1Q9NYU2 1555 aa19.02■□□□□ 0.64
USH1C-208ENST00000529563 MAST1Q9Y2H9 1570 aa19.02■□□□□ 0.63
USH1C-208ENST00000529563 ZC3H13Q5T200 1668 aaKnown RBP18.99■□□□□ 0.63
USH1C-208ENST00000529563 PIP4K2BP78356 416 aa18.99■□□□□ 0.63
USH1C-208ENST00000529563 RNF17Q9BXT8 1623 aaKnown RBP18.99■□□□□ 0.63
USH1C-208ENST00000529563 EIF2AK4Q9P2K8 1649 aaKnown RBP18.99■□□□□ 0.63
USH1C-208ENST00000529563 ABCC3O15438 1527 aa18.99■□□□□ 0.63
USH1C-208ENST00000529563 TOM1O60784 492 aa18.98■□□□□ 0.63
USH1C-208ENST00000529563 ILDR2Q71H61 639 aa18.98■□□□□ 0.63
USH1C-208ENST00000529563 NPHP4O75161 1426 aaPredicted RBP18.98■□□□□ 0.63
USH1C-208ENST00000529563 SHANK2Q9UPX8 1470 aa18.97■□□□□ 0.63
USH1C-208ENST00000529563 CPS1P31327 1500 aa18.97■□□□□ 0.63
USH1C-208ENST00000529563 DUOX2Q9NRD8 1548 aa18.97■□□□□ 0.63
USH1C-208ENST00000529563 NEURL4Q96JN8 1562 aa18.97■□□□□ 0.63
USH1C-208ENST00000529563 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.96■□□□□ 0.63
USH1C-208ENST00000529563 RRP7BPQ9NSQ0 103 aa18.96■□□□□ 0.63
USH1C-208ENST00000529563 KIF15Q9NS87 1388 aa18.95■□□□□ 0.62
USH1C-208ENST00000529563 ERVK-7P63135 1459 aa18.94■□□□□ 0.62
USH1C-208ENST00000529563 CEP152O94986 1710 aa18.93■□□□□ 0.62
USH1C-208ENST00000529563 KANK1Q14678 1352 aa18.93■□□□□ 0.62
USH1C-208ENST00000529563 SOCS7O14512 581 aa18.92■□□□□ 0.62
USH1C-208ENST00000529563 DEPDC5O75140 1603 aa18.92■□□□□ 0.62
USH1C-208ENST00000529563 PTPN23Q9H3S7 1636 aa18.92■□□□□ 0.62
USH1C-208ENST00000529563 STAG3Q9UJ98 1225 aa18.91■□□□□ 0.62
USH1C-208ENST00000529563 CFAP65Q6ZU64 1925 aaKnown RBP18.9■□□□□ 0.62
USH1C-208ENST00000529563 IQGAP1P46940 1657 aa18.9■□□□□ 0.62
USH1C-208ENST00000529563 ABCC5O15440 1437 aa18.9■□□□□ 0.62
USH1C-208ENST00000529563 ERBINQ96RT1 1412 aa18.9■□□□□ 0.62
USH1C-208ENST00000529563 MED14O60244 1454 aa18.9■□□□□ 0.62
USH1C-208ENST00000529563 CHIC2Q9UKJ5 165 aa18.89■□□□□ 0.61
USH1C-208ENST00000529563 MROH1Q8NDA8 1641 aa18.89■□□□□ 0.61
USH1C-208ENST00000529563 HSPA1LP34931 641 aa18.88■□□□□ 0.61
USH1C-208ENST00000529563 DAPK1P53355 1430 aa18.88■□□□□ 0.61
USH1C-208ENST00000529563 VWDEQ8N2E2 1590 aa18.88■□□□□ 0.61
USH1C-208ENST00000529563 CROCC2H7BZ55 1655 aa18.88■□□□□ 0.61
USH1C-208ENST00000529563 ANKRD30AQ9BXX3 1397 aa18.87■□□□□ 0.61
USH1C-208ENST00000529563 EID1Q9Y6B2 187 aa18.87■□□□□ 0.61
USH1C-208ENST00000529563 FGD6Q6ZV73 1430 aa18.86■□□□□ 0.61
USH1C-208ENST00000529563 TXNDC2Q86VQ3 553 aa18.86■□□□□ 0.61
USH1C-208ENST00000529563 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
USH1C-208ENST00000529563 PRDM15P57071 1507 aaPredicted RBP18.84■□□□□ 0.61
USH1C-208ENST00000529563 SCAF11Q99590 1463 aaKnown RBP18.84■□□□□ 0.61
USH1C-208ENST00000529563 FAM50AQ14320 339 aaKnown RBP18.83■□□□□ 0.6
USH1C-208ENST00000529563 UBR1Q8IWV7 1749 aa18.83■□□□□ 0.6
USH1C-208ENST00000529563 ARHGAP31Q2M1Z3 1444 aa18.83■□□□□ 0.6
USH1C-208ENST00000529563 LTKP29376 864 aa18.79■□□□□ 0.6
USH1C-208ENST00000529563 PHF23Q9BUL5 403 aaPredicted RBP18.79■□□□□ 0.6
USH1C-208ENST00000529563 SYNMO15061 1565 aa18.78■□□□□ 0.6
USH1C-208ENST00000529563 LRRC7Q96NW7 1537 aa18.78■□□□□ 0.6
USH1C-208ENST00000529563 BCANQ96GW7 911 aa18.77■□□□□ 0.6
USH1C-208ENST00000529563 SLIT1O75093 1534 aa18.76■□□□□ 0.59
USH1C-208ENST00000529563 PIK3C2BO00750 1634 aa18.76■□□□□ 0.59
USH1C-208ENST00000529563 TMEM2Q9UHN6 1383 aa18.75■□□□□ 0.59
USH1C-208ENST00000529563 STRCP1A6NGW2 1772 aa18.74■□□□□ 0.59
USH1C-208ENST00000529563 MED1Q15648 1581 aaPredicted RBP18.74■□□□□ 0.59
USH1C-208ENST00000529563 ARHGAP23Q9P227 1491 aa18.74■□□□□ 0.59
USH1C-208ENST00000529563 IDI1Q13907 227 aa18.73■□□□□ 0.59
USH1C-208ENST00000529563 EFCAB6Q5THR3 1501 aa18.73■□□□□ 0.59
USH1C-208ENST00000529563 LMTK2Q8IWU2 1503 aa18.71■□□□□ 0.59
USH1C-208ENST00000529563 ANKRD50Q9ULJ7 1429 aa18.69■□□□□ 0.58
USH1C-208ENST00000529563 SLC52A1Q9NWF4 448 aa18.69■□□□□ 0.58
USH1C-208ENST00000529563 ADGRL2O95490 1459 aa18.69■□□□□ 0.58
USH1C-208ENST00000529563 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
USH1C-208ENST00000529563 SLC26A8Q96RN1 970 aa18.68■□□□□ 0.58
USH1C-208ENST00000529563 ALKQ9UM73 1620 aa18.67■□□□□ 0.58
USH1C-208ENST00000529563 PROSER2Q86WR7 435 aaPredicted RBP18.67■□□□□ 0.58
USH1C-208ENST00000529563 CHGAP10645 457 aaKnown RBP18.66■□□□□ 0.58
USH1C-208ENST00000529563 KDM5AP29375 1690 aaKnown RBP18.66■□□□□ 0.58
USH1C-208ENST00000529563 ADGRB3O60242 1522 aa18.65■□□□□ 0.58
USH1C-208ENST00000529563 KCNA6P17658 529 aa18.65■□□□□ 0.58
USH1C-208ENST00000529563 HDGFP51858 240 aaKnown RBP18.65■□□□□ 0.58
USH1C-208ENST00000529563 NOS1P29475 1434 aa18.65■□□□□ 0.58
USH1C-208ENST00000529563 TMEM94Q12767 1356 aa18.64■□□□□ 0.57
USH1C-208ENST00000529563 RPRD2Q5VT52 1461 aaKnown RBP18.63■□□□□ 0.57
USH1C-208ENST00000529563 ITGAEP38570 1179 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms