RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CCER1Q8TC90 406 aaPredicted RBP8.33□□□□□ -1.08
CD44-225ENST00000527326 SALL2Q9Y467 1007 aaPredicted RBP8.33□□□□□ -1.08
CD44-225ENST00000527326 ARHGAP33O14559 1287 aa8.32□□□□□ -1.08
CD44-225ENST00000527326 DEKP35659 375 aaKnown RBP8.32□□□□□ -1.08
CD44-225ENST00000527326 FANCIQ9NVI1 1328 aa8.31□□□□□ -1.08
CD44-225ENST00000527326 LOC105371045A0A1W2PR82 267 aa8.31□□□□□ -1.08
CD44-225ENST00000527326 PPP4R3BQ5MIZ7 849 aa8.31□□□□□ -1.08
CD44-225ENST00000527326 CFAP44Q96MT7 982 aa8.31□□□□□ -1.08
CD44-225ENST00000527326 PODXL2Q9NZ53 605 aa8.31□□□□□ -1.08
CD44-225ENST00000527326 DDX27Q96GQ7 796 aaKnown RBP8.3□□□□□ -1.08
CD44-225ENST00000527326 RBM19Q9Y4C8 960 aaKnown RBP8.3□□□□□ -1.08
CD44-225ENST00000527326 PSEN2P49810 448 aa8.28□□□□□ -1.08
CD44-225ENST00000527326 UNC13AQ9UPW8 1703 aa8.27□□□□□ -1.09
CD44-225ENST00000527326 ADGRD1Q6QNK2 874 aa8.27□□□□□ -1.09
CD44-225ENST00000527326 DMRTA1Q5VZB9 504 aa8.26□□□□□ -1.09
CD44-225ENST00000527326 CADPS2Q86UW7 1296 aa8.26□□□□□ -1.09
CD44-225ENST00000527326 ZNF454Q8N9F8 522 aa8.26□□□□□ -1.09
CD44-225ENST00000527326 KCNK17Q96T54 332 aa8.26□□□□□ -1.09
CD44-225ENST00000527326 MAP3K9P80192 1104 aa8.25□□□□□ -1.09
CD44-225ENST00000527326 KCNH8Q96L42 1107 aa8.25□□□□□ -1.09
CD44-225ENST00000527326 EVI5O60447 810 aa8.24□□□□□ -1.09
CD44-225ENST00000527326 MFSD10Q14728 455 aa8.24□□□□□ -1.09
CD44-225ENST00000527326 TPRNQ4KMQ1 711 aa8.24□□□□□ -1.09
CD44-225ENST00000527326 SHROOM4Q9ULL8 1493 aa8.24□□□□□ -1.09
CD44-225ENST00000527326 TK2O00142 265 aa8.23□□□□□ -1.09
CD44-225ENST00000527326 SPRYD3Q8NCJ5 442 aa8.23□□□□□ -1.09
CD44-225ENST00000527326 GLIPR1L2Q4G1C9 344 aa8.22□□□□□ -1.09
CD44-225ENST00000527326 NEFLP07196 543 aa8.21□□□□□ -1.1
CD44-225ENST00000527326 FOSBP53539 338 aa8.21□□□□□ -1.1
CD44-225ENST00000527326 CCDC136Q96JN2 1154 aa8.21□□□□□ -1.1
CD44-225ENST00000527326 STAC3Q96MF2 364 aa8.21□□□□□ -1.1
CD44-225ENST00000527326 EMILIN3Q9NT22 766 aa8.21□□□□□ -1.1
CD44-225ENST00000527326 BCL2L12Q9HB09 334 aa8.19□□□□□ -1.1
CD44-225ENST00000527326 HRO43593 1189 aa8.18□□□□□ -1.1
CD44-225ENST00000527326 PTPREP23469 700 aa8.18□□□□□ -1.1
CD44-225ENST00000527326 JPH4Q96JJ6 628 aa8.18□□□□□ -1.1
CD44-225ENST00000527326 ZDHHC16Q969W1 377 aa8.17□□□□□ -1.1
CD44-225ENST00000527326 VPS9D1Q9Y2B5 631 aa8.17□□□□□ -1.1
CD44-225ENST00000527326 ADAM33Q9BZ11 813 aa8.16□□□□□ -1.1
CD44-225ENST00000527326 HCSTQ9UBK5 93 aa8.16□□□□□ -1.1
CD44-225ENST00000527326 KCTD12Q96CX2 325 aaKnown RBP8.14□□□□□ -1.11
CD44-225ENST00000527326 DPYSL4O14531 572 aa8.12□□□□□ -1.11
CD44-225ENST00000527326 CAMK2BQ13554 666 aa8.12□□□□□ -1.11
CD44-225ENST00000527326 SLC4A5Q9BY07 1137 aa8.12□□□□□ -1.11
CD44-225ENST00000527326 PCDHGA10Q9Y5H3 936 aa8.12□□□□□ -1.11
CD44-225ENST00000527326 BICRAQ9NZM4 1560 aa8.11□□□□□ -1.11
CD44-225ENST00000527326 ZBED2Q9BTP6 218 aa8.11□□□□□ -1.11
CD44-225ENST00000527326 TYW1BQ6NUM6 668 aa8.1□□□□□ -1.11
CD44-225ENST00000527326 FBXW7Q969H0 707 aa8.1□□□□□ -1.11
CD44-225ENST00000527326 GOLGA8CPA6NN73 597 aa8.09□□□□□ -1.11
CD44-225ENST00000527326 PHF14O94880 888 aa8.09□□□□□ -1.11
CD44-225ENST00000527326 RTL5Q5HYW3 569 aaPredicted RBP8.09□□□□□ -1.11
CD44-225ENST00000527326 RSPH6AQ9H0K4 717 aa8.09□□□□□ -1.11
CD44-225ENST00000527326 C11orf95C9JLR9 678 aaPredicted RBP8.08□□□□□ -1.12
CD44-225ENST00000527326 PLA2G2EQ9NZK7 142 aa8.08□□□□□ -1.12
CD44-225ENST00000527326 BHMG1C9JSJ3 638 aaPredicted RBP8.07□□□□□ -1.12
CD44-225ENST00000527326 PTPN5P54829 565 aa8.07□□□□□ -1.12
CD44-225ENST00000527326 MRPL50Q8N5N7 158 aaKnown RBP8.07□□□□□ -1.12
CD44-225ENST00000527326 CDK11AQ9UQ88 783 aaPredicted RBP8.07□□□□□ -1.12
CD44-225ENST00000527326 PPP1R3GB7ZBB8 358 aa8.06□□□□□ -1.12
CD44-225ENST00000527326 COL9A1P20849 921 aa8.06□□□□□ -1.12
CD44-225ENST00000527326 IL27Q8NEV9 243 aa8.06□□□□□ -1.12
CD44-225ENST00000527326 DDX12PQ92771 950 aa8.05□□□□□ -1.12
CD44-225ENST00000527326 EPAS1Q99814 870 aa8.05□□□□□ -1.12
CD44-225ENST00000527326 NBPF3Q9H094 633 aa8.05□□□□□ -1.12
CD44-225ENST00000527326 WDR70Q9NW82 654 aa8.05□□□□□ -1.12
CD44-225ENST00000527326 NOP58Q9Y2X3 529 aaKnown RBP8.05□□□□□ -1.12
CD44-225ENST00000527326 CC2D2AQ9P2K1 1620 aa8.04□□□□□ -1.12
CD44-225ENST00000527326 PROX2Q3B8N5 592 aa8.04□□□□□ -1.12
CD44-225ENST00000527326 WNT2BQ93097 391 aa8.04□□□□□ -1.12
CD44-225ENST00000527326 RBM33Q96EV2 1170 aaKnown RBP8.04□□□□□ -1.12
CD44-225ENST00000527326 E2F4Q16254 413 aa8.03□□□□□ -1.12
CD44-225ENST00000527326 C6orf132Q5T0Z8 1188 aa8.03□□□□□ -1.12
CD44-225ENST00000527326 CECR2Q9BXF3 1484 aa8.02□□□□□ -1.13
CD44-225ENST00000527326 RANGAP1P46060 587 aaPredicted RBP8.02□□□□□ -1.13
CD44-225ENST00000527326 ZMYND15Q9H091 742 aa8.02□□□□□ -1.13
CD44-225ENST00000527326 RABGEF1Q9UJ41 708 aa8.02□□□□□ -1.13
CD44-225ENST00000527326 SPDYE16A6NNV3 312 aaPredicted RBP8.01□□□□□ -1.13
CD44-225ENST00000527326 PDE4CQ08493 712 aa8.01□□□□□ -1.13
CD44-225ENST00000527326 THSD4Q6ZMP0 1018 aa8.01□□□□□ -1.13
CD44-225ENST00000527326 NBR1Q14596 966 aa8□□□□□ -1.13
CD44-225ENST00000527326 PDIA6Q15084 440 aa8□□□□□ -1.13
CD44-225ENST00000527326 KIAA1468Q9P260 1216 aa8□□□□□ -1.13
CD44-225ENST00000527326 EIF4G1Q04637 1599 aaKnown RBP7.99□□□□□ -1.13
CD44-225ENST00000527326 MAP3K7O43318 606 aa7.98□□□□□ -1.13
CD44-225ENST00000527326 PDIA4P13667 645 aaKnown RBP7.98□□□□□ -1.13
CD44-225ENST00000527326 FGD1P98174 961 aa7.98□□□□□ -1.13
CD44-225ENST00000527326 USP35Q9P2H5 1018 aa7.98□□□□□ -1.13
CD44-225ENST00000527326 WASHC2AQ641Q2 1341 aa7.98□□□□□ -1.13
CD44-225ENST00000527326 WASHC2CQ9Y4E1 1318 aa7.98□□□□□ -1.13
CD44-225ENST00000527326 WRNQ14191 1432 aaPredicted RBP eCLIP7.97□□□□□ -1.13
CD44-225ENST00000527326 ANKK1Q8NFD2 765 aa7.97□□□□□ -1.13
CD44-225ENST00000527326 ZCCHC6Q5VYS8 1495 aaKnown RBP7.97□□□□□ -1.13
CD44-225ENST00000527326 LAPTM4BQ86VI4 370 aa7.96□□□□□ -1.14
CD44-225ENST00000527326 GRXCR2A6NFK2 248 aa7.95□□□□□ -1.14
CD44-225ENST00000527326 TRIM6-TRIM34B2RNG4 842 aa7.95□□□□□ -1.14
CD44-225ENST00000527326 ONECUT3O60422 494 aaPredicted RBP7.95□□□□□ -1.14
CD44-225ENST00000527326 EN1Q05925 392 aaPredicted RBP7.95□□□□□ -1.14
CD44-225ENST00000527326 TSR1Q2NL82 804 aaKnown RBP7.95□□□□□ -1.14
CD44-225ENST00000527326 SEPT9Q9UHD8 586 aaPredicted RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms