RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 LRRC7Q96NW7 1537 aa17.79■□□□□ 0.44
NEDD8-204ENST00000526430 PLEKHH2Q8IVE3 1493 aa17.79■□□□□ 0.44
NEDD8-204ENST00000526430 XIRP1Q702N8 1843 aaKnown RBP17.78■□□□□ 0.44
NEDD8-204ENST00000526430 TNRQ92752 1358 aa17.78■□□□□ 0.44
NEDD8-204ENST00000526430 PZPP20742 1482 aa17.77■□□□□ 0.44
NEDD8-204ENST00000526430 GGT6Q6P531 493 aa17.77■□□□□ 0.44
NEDD8-204ENST00000526430 NPHP4O75161 1426 aaPredicted RBP17.77■□□□□ 0.44
NEDD8-204ENST00000526430 ANKLE2Q86XL3 938 aa17.76■□□□□ 0.43
NEDD8-204ENST00000526430 EHMT2Q96KQ7 1210 aa17.76■□□□□ 0.43
NEDD8-204ENST00000526430 NLRP1Q9C000 1473 aa17.75■□□□□ 0.43
NEDD8-204ENST00000526430 ZC3H13Q5T200 1668 aaKnown RBP17.75■□□□□ 0.43
NEDD8-204ENST00000526430 GPATCH8Q9UKJ3 1502 aaKnown RBP17.75■□□□□ 0.43
NEDD8-204ENST00000526430 SETD1AO15047 1707 aaKnown RBP17.75■□□□□ 0.43
NEDD8-204ENST00000526430 UGGT1Q9NYU2 1555 aa17.74■□□□□ 0.43
NEDD8-204ENST00000526430 KDM5DQ9BY66 1539 aa17.74■□□□□ 0.43
NEDD8-204ENST00000526430 CASKIN1Q8WXD9 1431 aa17.73■□□□□ 0.43
NEDD8-204ENST00000526430 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP17.73■□□□□ 0.43
NEDD8-204ENST00000526430 LOC105371045A0A1W2PR82 267 aa17.72■□□□□ 0.43
NEDD8-204ENST00000526430 HNRNPMP52272 730 aaKnown RBP eCLIP17.71■□□□□ 0.43
NEDD8-204ENST00000526430 THEMISQ8N1K5 641 aaPredicted RBP17.71■□□□□ 0.43
NEDD8-204ENST00000526430 ZNF777Q9ULD5 760 aaPredicted RBP17.71■□□□□ 0.43
NEDD8-204ENST00000526430 UBTFP17480 764 aaKnown RBP17.68■□□□□ 0.42
NEDD8-204ENST00000526430 POTEAQ6S8J7 498 aa17.68■□□□□ 0.42
NEDD8-204ENST00000526430 MIA2Q96PC5 1412 aa17.67■□□□□ 0.42
NEDD8-204ENST00000526430 FBXO31Q5XUX0 539 aaPredicted RBP17.67■□□□□ 0.42
NEDD8-204ENST00000526430 RTEL1-TNFRSF6BF6WH68 1400 aa17.66■□□□□ 0.42
NEDD8-204ENST00000526430 SENP3Q9H4L4 574 aaPredicted RBP17.66■□□□□ 0.42
NEDD8-204ENST00000526430 FYCO1Q9BQS8 1478 aa17.66■□□□□ 0.42
NEDD8-204ENST00000526430 DHX29Q7Z478 1369 aaKnown RBP17.65■□□□□ 0.42
NEDD8-204ENST00000526430 UBR1Q8IWV7 1749 aa17.63■□□□□ 0.41
NEDD8-204ENST00000526430 FAM135BQ49AJ0 1406 aa17.63■□□□□ 0.41
NEDD8-204ENST00000526430 CFDP1Q9UEE9 299 aaPredicted RBP17.61■□□□□ 0.41
NEDD8-204ENST00000526430 MBD5Q9P267 1494 aa17.61■□□□□ 0.41
NEDD8-204ENST00000526430 ROBO1Q9Y6N7 1651 aa17.61■□□□□ 0.41
NEDD8-204ENST00000526430 CCNB3Q8WWL7 1395 aa17.58■□□□□ 0.4
NEDD8-204ENST00000526430 TIAM1Q13009 1591 aa17.57■□□□□ 0.4
NEDD8-204ENST00000526430 CFAP65Q6ZU64 1925 aaKnown RBP17.57■□□□□ 0.4
NEDD8-204ENST00000526430 WASHC2CQ9Y4E1 1318 aa17.56■□□□□ 0.4
NEDD8-204ENST00000526430 SCAF11Q99590 1463 aaKnown RBP17.56■□□□□ 0.4
NEDD8-204ENST00000526430 KIF3BO15066 747 aa17.55■□□□□ 0.4
NEDD8-204ENST00000526430 SLIT1O75093 1534 aa17.53■□□□□ 0.4
NEDD8-204ENST00000526430 PHLPP1O60346 1717 aa17.52■□□□□ 0.4
NEDD8-204ENST00000526430 LRRC9Q6ZRR7 1453 aa17.52■□□□□ 0.4
NEDD8-204ENST00000526430 ARHGAP23Q9P227 1491 aa17.52■□□□□ 0.4
NEDD8-204ENST00000526430 ERVK-7P63135 1459 aa17.51■□□□□ 0.39
NEDD8-204ENST00000526430 ABCC3O15438 1527 aa17.51■□□□□ 0.39
NEDD8-204ENST00000526430 CCDC141Q6ZP82 1450 aa17.5■□□□□ 0.39
NEDD8-204ENST00000526430 MAP3K1Q13233 1512 aa17.49■□□□□ 0.39
NEDD8-204ENST00000526430 UPF1Q92900 1129 aaKnown RBP eCLIP17.49■□□□□ 0.393e-7■□□□□ 10.1
NEDD8-204ENST00000526430 EIF2AK4Q9P2K8 1649 aaKnown RBP17.49■□□□□ 0.39
NEDD8-204ENST00000526430 NCOA2Q15596 1464 aa17.49■□□□□ 0.39
NEDD8-204ENST00000526430 ZNF644Q9H582 1327 aaPredicted RBP17.48■□□□□ 0.39
NEDD8-204ENST00000526430 CEP152O94986 1710 aa17.48■□□□□ 0.39
NEDD8-204ENST00000526430 KDM5AP29375 1690 aaKnown RBP17.47■□□□□ 0.39
NEDD8-204ENST00000526430 CAMSAP2Q08AD1 1489 aa17.45■□□□□ 0.38
NEDD8-204ENST00000526430 EHBP1L1Q8N3D4 1523 aa17.45■□□□□ 0.38
NEDD8-204ENST00000526430 CEP162Q5TB80 1403 aa17.45■□□□□ 0.38
NEDD8-204ENST00000526430 ARHGEF5Q12774 1597 aa17.45■□□□□ 0.38
NEDD8-204ENST00000526430 SRCAPQ6ZRS2 3230 aa17.44■□□□□ 0.38
NEDD8-204ENST00000526430 COL16A1Q07092 1604 aaPredicted RBP17.44■□□□□ 0.38
NEDD8-204ENST00000526430 MTUS2Q5JR59 1369 aa17.44■□□□□ 0.38
NEDD8-204ENST00000526430 MROH1Q8NDA8 1641 aa17.44■□□□□ 0.38
NEDD8-204ENST00000526430 JCADQ9P266 1359 aa17.44■□□□□ 0.38
NEDD8-204ENST00000526430 TMEM94Q12767 1356 aa17.43■□□□□ 0.38
NEDD8-204ENST00000526430 NWD1Q149M9 1564 aa17.42■□□□□ 0.38
NEDD8-204ENST00000526430 LTKP29376 864 aa17.41■□□□□ 0.38
NEDD8-204ENST00000526430 RSPH4AQ5TD94 716 aa17.41■□□□□ 0.38
NEDD8-204ENST00000526430 SHPRHQ149N8 1683 aa17.41■□□□□ 0.38
NEDD8-204ENST00000526430 PRDM15P57071 1507 aaPredicted RBP17.41■□□□□ 0.38
NEDD8-204ENST00000526430 NKTRP30414 1462 aaKnown RBP17.4■□□□□ 0.38
NEDD8-204ENST00000526430 CDK12Q9NYV4 1490 aaPredicted RBP17.4■□□□□ 0.38
NEDD8-204ENST00000526430 PIK3C2BO00750 1634 aa17.39■□□□□ 0.38
NEDD8-204ENST00000526430 TXNDC2Q86VQ3 553 aa17.39■□□□□ 0.37
NEDD8-204ENST00000526430 MAST1Q9Y2H9 1570 aa17.39■□□□□ 0.37
NEDD8-204ENST00000526430 LRP6O75581 1613 aa17.38■□□□□ 0.37
NEDD8-204ENST00000526430 TET3O43151 1660 aa17.38■□□□□ 0.37
NEDD8-204ENST00000526430 FGD6Q6ZV73 1430 aa17.38■□□□□ 0.37
NEDD8-204ENST00000526430 ZNF772Q68DY9 489 aaPredicted RBP17.37■□□□□ 0.37
NEDD8-204ENST00000526430 EID1Q9Y6B2 187 aa17.36■□□□□ 0.37
NEDD8-204ENST00000526430 SPATA31A6Q5VVP1 1343 aa17.36■□□□□ 0.37
NEDD8-204ENST00000526430 KCNA6P17658 529 aa17.35■□□□□ 0.37
NEDD8-204ENST00000526430 ARHGAP31Q2M1Z3 1444 aa17.35■□□□□ 0.37
NEDD8-204ENST00000526430 CHD2O14647 1828 aaKnown RBP17.34■□□□□ 0.37
NEDD8-204ENST00000526430 TMEM2Q9UHN6 1383 aa17.34■□□□□ 0.37
NEDD8-204ENST00000526430 MSH6P52701 1360 aa17.33■□□□□ 0.36
NEDD8-204ENST00000526430 TRIM52Q96A61 297 aa17.32■□□□□ 0.36
NEDD8-204ENST00000526430 AHDC1Q5TGY3 1603 aaPredicted RBP17.32■□□□□ 0.36
NEDD8-204ENST00000526430 EFCAB6Q5THR3 1501 aa17.31■□□□□ 0.36
NEDD8-204ENST00000526430 PROSER2Q86WR7 435 aaPredicted RBP17.31■□□□□ 0.36
NEDD8-204ENST00000526430 SLAIN2Q9P270 581 aa17.31■□□□□ 0.36
NEDD8-204ENST00000526430 TSPY4P0CV99 314 aa17.28■□□□□ 0.36
NEDD8-204ENST00000526430 TSPY10P0CW01 314 aa17.28■□□□□ 0.36
NEDD8-204ENST00000526430 RXRBP28702 533 aa17.28■□□□□ 0.36
NEDD8-204ENST00000526430 MEX3CQ5U5Q3 659 aaKnown RBP17.26■□□□□ 0.35
NEDD8-204ENST00000526430 DUOX2Q9NRD8 1548 aa17.26■□□□□ 0.35
NEDD8-204ENST00000526430 DIP2AQ14689 1571 aa17.25■□□□□ 0.35
NEDD8-204ENST00000526430 RBM33Q96EV2 1170 aaKnown RBP17.24■□□□□ 0.35
NEDD8-204ENST00000526430 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.24■□□□□ 0.35
NEDD8-204ENST00000526430 NCOA3Q9Y6Q9 1424 aa17.23■□□□□ 0.35
NEDD8-204ENST00000526430 VPS8Q8N3P4 1428 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms