RNA–Protein interactions for RNA: ENST00000525469.1

CD44-218, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 705 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-218ENST00000525469 ST18O60284 1047 aa8.47□□□□□ -1.05
CD44-218ENST00000525469 ADCY10Q96PN6 1610 aa8.47□□□□□ -1.05
CD44-218ENST00000525469 FHAD1B1AJZ9 1412 aa8.46□□□□□ -1.05
CD44-218ENST00000525469 GTPBP6O43824 516 aaPredicted RBP8.46□□□□□ -1.06
CD44-218ENST00000525469 POTEGQ6S5H5 508 aa8.46□□□□□ -1.06
CD44-218ENST00000525469 ZSWIM6Q9HCJ5 1215 aa8.46□□□□□ -1.06
CD44-218ENST00000525469 SOCS7O14512 581 aa8.45□□□□□ -1.06
CD44-218ENST00000525469 TMEM92Q6UXU6 159 aa8.45□□□□□ -1.06
CD44-218ENST00000525469 TOP2BQ02880 1626 aa8.44□□□□□ -1.06
CD44-218ENST00000525469 C2orf72A6NCS6 295 aa8.44□□□□□ -1.06
CD44-218ENST00000525469 KIF3CO14782 793 aa8.43□□□□□ -1.06
CD44-218ENST00000525469 PCDH10Q9P2E7 1040 aa8.43□□□□□ -1.06
CD44-218ENST00000525469 SPRYD3Q8NCJ5 442 aa8.42□□□□□ -1.06
CD44-218ENST00000525469 DISP3Q9P2K9 1392 aa8.41□□□□□ -1.06
CD44-218ENST00000525469 HOXB3P14651 431 aaPredicted RBP8.41□□□□□ -1.06
CD44-218ENST00000525469 EMP3P54852 163 aa8.41□□□□□ -1.06
CD44-218ENST00000525469 LCE2DQ5TA82 110 aaPredicted RBP8.41□□□□□ -1.06
CD44-218ENST00000525469 PPRC1Q5VV67 1664 aaKnown RBP8.4□□□□□ -1.06
CD44-218ENST00000525469 WRNQ14191 1432 aaPredicted RBP eCLIP8.4□□□□□ -1.06
CD44-218ENST00000525469 GPHNQ9NQX3 736 aaPredicted RBP8.4□□□□□ -1.06
CD44-218ENST00000525469 HOXB1P14653 301 aaPredicted RBP8.39□□□□□ -1.07
CD44-218ENST00000525469 ERICH3Q5RHP9 1530 aa8.39□□□□□ -1.07
CD44-218ENST00000525469 TTBK1Q5TCY1 1321 aaPredicted RBP8.38□□□□□ -1.07
CD44-218ENST00000525469 PDE4AP27815 886 aa8.38□□□□□ -1.07
CD44-218ENST00000525469 FOXK1P85037 733 aa8.38□□□□□ -1.07
CD44-218ENST00000525469 PLB1Q6P1J6 1458 aa8.38□□□□□ -1.07
CD44-218ENST00000525469 TEX14Q8IWB6 1497 aa8.38□□□□□ -1.07
CD44-218ENST00000525469 GLI2P10070 1586 aa8.37□□□□□ -1.07
CD44-218ENST00000525469 ILDR2Q71H61 639 aa8.37□□□□□ -1.07
CD44-218ENST00000525469 RUSC2Q8N2Y8 1516 aa8.37□□□□□ -1.07
CD44-218ENST00000525469 SLC34A2O95436 690 aa8.36□□□□□ -1.07
CD44-218ENST00000525469 MARVELD3Q96A59 401 aa8.36□□□□□ -1.07
CD44-218ENST00000525469 ASXL2Q76L83 1435 aa8.36□□□□□ -1.07
CD44-218ENST00000525469 CUL7Q14999 1698 aa8.35□□□□□ -1.07
CD44-218ENST00000525469 CRISPLD2Q9H0B8 497 aa8.35□□□□□ -1.07
CD44-218ENST00000525469 COL17A1Q9UMD9 1497 aaPredicted RBP8.34□□□□□ -1.07
CD44-218ENST00000525469 TBC1D12O60347 775 aa8.34□□□□□ -1.07
CD44-218ENST00000525469 PLPP6Q8IY26 295 aa8.34□□□□□ -1.07
CD44-218ENST00000525469 CFAP44Q96MT7 982 aa8.34□□□□□ -1.07
CD44-218ENST00000525469 PTPRGP23470 1445 aa8.34□□□□□ -1.07
CD44-218ENST00000525469 ERBB3P21860 1342 aa8.33□□□□□ -1.08
CD44-218ENST00000525469 PPP1R15BQ5SWA1 713 aa8.33□□□□□ -1.08
CD44-218ENST00000525469 PAXIP1Q6ZW49 1069 aaPredicted RBP8.33□□□□□ -1.08
CD44-218ENST00000525469 ABCC2Q92887 1545 aa8.33□□□□□ -1.08
CD44-218ENST00000525469 MAP3K4Q9Y6R4 1608 aa8.32□□□□□ -1.08
CD44-218ENST00000525469 DSG2Q14126 1118 aa8.32□□□□□ -1.08
CD44-218ENST00000525469 DDX27Q96GQ7 796 aaKnown RBP8.32□□□□□ -1.08
CD44-218ENST00000525469 FAM205CA6NFA0 338 aa8.31□□□□□ -1.08
CD44-218ENST00000525469 ZNF316A6NFI3 1004 aaPredicted RBP8.31□□□□□ -1.08
CD44-218ENST00000525469 GPR153Q6NV75 609 aa8.31□□□□□ -1.08
CD44-218ENST00000525469 KIAA0586Q9BVV6 1533 aa8.3□□□□□ -1.08
CD44-218ENST00000525469 KIF21BO75037 1637 aa8.3□□□□□ -1.08
CD44-218ENST00000525469 ARSIQ5FYB1 569 aa8.3□□□□□ -1.08
CD44-218ENST00000525469 CDAN1Q8IWY9 1227 aa8.3□□□□□ -1.08
CD44-218ENST00000525469 CERKQ8TCT0 537 aa8.3□□□□□ -1.08
CD44-218ENST00000525469 LARP6Q9BRS8 491 aaKnown RBP8.3□□□□□ -1.08
CD44-218ENST00000525469 PCDHGA4Q9Y5G9 962 aa8.3□□□□□ -1.08
CD44-218ENST00000525469 NCKAP5LQ9HCH0 1330 aa8.29□□□□□ -1.08
CD44-218ENST00000525469 CARMIL2Q6F5E8 1435 aa8.29□□□□□ -1.08
CD44-218ENST00000525469 EPRSP07814 1512 aaKnown RBP8.29□□□□□ -1.08
CD44-218ENST00000525469 BIVM-ERCC5R4GMW8 1640 aa8.29□□□□□ -1.08
CD44-218ENST00000525469 PTCD2Q8WV60 388 aaKnown RBP8.29□□□□□ -1.08
CD44-218ENST00000525469 HS3ST6Q96QI5 342 aa8.29□□□□□ -1.08
CD44-218ENST00000525469 TNIKQ9UKE5 1360 aa8.28□□□□□ -1.08
CD44-218ENST00000525469 PSDA5PKW4 1024 aaPredicted RBP8.28□□□□□ -1.08
CD44-218ENST00000525469 PTPRMP28827 1452 aa8.27□□□□□ -1.09
CD44-218ENST00000525469 MFSD10Q14728 455 aa8.27□□□□□ -1.09
CD44-218ENST00000525469 PCF11O94913 1555 aaKnown RBP8.27□□□□□ -1.09
CD44-218ENST00000525469 SPATA31D1Q6ZQQ2 1576 aa8.27□□□□□ -1.09
CD44-218ENST00000525469 NUDT7P0C024 238 aa8.25□□□□□ -1.09
CD44-218ENST00000525469 VARS2Q5ST30 1063 aaKnown RBP8.25□□□□□ -1.09
CD44-218ENST00000525469 UACAQ9BZF9 1416 aa8.25□□□□□ -1.09
CD44-218ENST00000525469 UHRF1BP1LA0JNW5 1464 aa8.25□□□□□ -1.09
CD44-218ENST00000525469 ZCCHC11Q5TAX3 1644 aaKnown RBP8.24□□□□□ -1.09
CD44-218ENST00000525469 ARID4BQ4LE39 1312 aaPredicted RBP8.24□□□□□ -1.09
CD44-218ENST00000525469 ADAMTSL3P82987 1691 aa8.24□□□□□ -1.09
CD44-218ENST00000525469 WDR70Q9NW82 654 aa8.23□□□□□ -1.09
CD44-218ENST00000525469 CFAP43Q8NDM7 1665 aa8.23□□□□□ -1.09
CD44-218ENST00000525469 CD109Q6YHK3 1445 aa8.22□□□□□ -1.09
CD44-218ENST00000525469 CADPS2Q86UW7 1296 aa8.22□□□□□ -1.09
CD44-218ENST00000525469 OXER1Q8TDS5 423 aa8.22□□□□□ -1.09
CD44-218ENST00000525469 UPF1Q92900 1129 aaKnown RBP eCLIP8.22□□□□□ -1.09
CD44-218ENST00000525469 KDM5BQ9UGL1 1544 aa8.21□□□□□ -1.1
CD44-218ENST00000525469 HSPA2P54652 639 aa8.21□□□□□ -1.1
CD44-218ENST00000525469 KHSRPQ92945 711 aaKnown RBP eCLIP8.21□□□□□ -1.1
CD44-218ENST00000525469 KCNH8Q96L42 1107 aa8.21□□□□□ -1.1
CD44-218ENST00000525469 WDR7Q9Y4E6 1490 aa8.2□□□□□ -1.1
CD44-218ENST00000525469 MAGI3Q5TCQ9 1506 aa8.2□□□□□ -1.1
CD44-218ENST00000525469 MAP3K9P80192 1104 aa8.2□□□□□ -1.1
CD44-218ENST00000525469 ZNF687Q8N1G0 1237 aa8.2□□□□□ -1.1
CD44-218ENST00000525469 PBX2P40425 430 aa8.19□□□□□ -1.1
CD44-218ENST00000525469 LHX6Q9UPM6 363 aa8.19□□□□□ -1.1
CD44-218ENST00000525469 BCORL1Q5H9F3 1711 aa8.19□□□□□ -1.1
CD44-218ENST00000525469 MADDQ8WXG6 1647 aa8.18□□□□□ -1.1
CD44-218ENST00000525469 RIMS1Q86UR5 1692 aaKnown RBP8.18□□□□□ -1.1
CD44-218ENST00000525469 PPP4R3BQ5MIZ7 849 aa8.18□□□□□ -1.1
CD44-218ENST00000525469 IQGAP2Q13576 1575 aa8.18□□□□□ -1.1
CD44-218ENST00000525469 POTEB3A0JP26 581 aa8.16□□□□□ -1.1
CD44-218ENST00000525469 CAMK2BQ13554 666 aa8.16□□□□□ -1.1
CD44-218ENST00000525469 POTEBQ6S5H4 581 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms