RNA–Protein interactions for RNA: ENST00000525121.2

HMGB1P40-201, Transcript of high mobility group box 1 pseudogene 40, humanhuman

BASIC

Gene HMGB1P40, Length 540 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P40-201ENST00000525121 ADGRL2O95490 1459 aa8.19□□□□□ -1.1
HMGB1P40-201ENST00000525121 WASHC2CQ9Y4E1 1318 aa8.18□□□□□ -1.1
HMGB1P40-201ENST00000525121 ROCK1Q13464 1354 aa8.18□□□□□ -1.1
HMGB1P40-201ENST00000525121 KANK1Q14678 1352 aa8.18□□□□□ -1.1
HMGB1P40-201ENST00000525121 NCOA1Q15788 1441 aa8.18□□□□□ -1.1
HMGB1P40-201ENST00000525121 KDM5DQ9BY66 1539 aa8.18□□□□□ -1.1
HMGB1P40-201ENST00000525121 MROH2AA6NES4 1674 aa8.16□□□□□ -1.1
HMGB1P40-201ENST00000525121 RNF17Q9BXT8 1623 aaKnown RBP8.16□□□□□ -1.1
HMGB1P40-201ENST00000525121 ANKRD50Q9ULJ7 1429 aa8.16□□□□□ -1.1
HMGB1P40-201ENST00000525121 ZMYM3Q14202 1370 aa8.15□□□□□ -1.1
HMGB1P40-201ENST00000525121 CEBPAP49715 358 aaPredicted RBP8.15□□□□□ -1.1
HMGB1P40-201ENST00000525121 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.15□□□□□ -1.1
HMGB1P40-201ENST00000525121 CLTCQ00610 1675 aaKnown RBP8.14□□□□□ -1.11
HMGB1P40-201ENST00000525121 ZC3H13Q5T200 1668 aaKnown RBP8.14□□□□□ -1.11
HMGB1P40-201ENST00000525121 NPATQ14207 1427 aa8.14□□□□□ -1.11
HMGB1P40-201ENST00000525121 UHRF1BP1Q6BDS2 1440 aa8.14□□□□□ -1.11
HMGB1P40-201ENST00000525121 PRDM15P57071 1507 aaPredicted RBP8.13□□□□□ -1.11
HMGB1P40-201ENST00000525121 PTPRKQ15262 1439 aa8.13□□□□□ -1.11
HMGB1P40-201ENST00000525121 C3P01024 1663 aa8.13□□□□□ -1.11
HMGB1P40-201ENST00000525121 ABCC3O15438 1527 aa8.13□□□□□ -1.11
HMGB1P40-201ENST00000525121 PZPP20742 1482 aa8.13□□□□□ -1.11
HMGB1P40-201ENST00000525121 PREX1Q8TCU6 1659 aa8.11□□□□□ -1.11
HMGB1P40-201ENST00000525121 DEPDC5O75140 1603 aa8.11□□□□□ -1.11
HMGB1P40-201ENST00000525121 MROH1Q8NDA8 1641 aa8.11□□□□□ -1.11
HMGB1P40-201ENST00000525121 LMTK3Q96Q04 1460 aa8.11□□□□□ -1.11
HMGB1P40-201ENST00000525121 TNRQ92752 1358 aa8.1□□□□□ -1.11
HMGB1P40-201ENST00000525121 HFM1A2PYH4 1435 aa8.1□□□□□ -1.11
HMGB1P40-201ENST00000525121 CAMSAP1Q5T5Y3 1602 aa8.09□□□□□ -1.11
HMGB1P40-201ENST00000525121 ARHGAP31Q2M1Z3 1444 aa8.09□□□□□ -1.11
HMGB1P40-201ENST00000525121 UNC13BO14795 1591 aa8.09□□□□□ -1.11
HMGB1P40-201ENST00000525121 LMTK2Q8IWU2 1503 aa8.08□□□□□ -1.12
HMGB1P40-201ENST00000525121 ACIN1Q9UKV3 1341 aaKnown RBP8.08□□□□□ -1.12
HMGB1P40-201ENST00000525121 NAIPQ13075 1403 aa8.08□□□□□ -1.12
HMGB1P40-201ENST00000525121 CEP152O94986 1710 aa8.08□□□□□ -1.12
HMGB1P40-201ENST00000525121 NUP155O75694 1391 aa8.08□□□□□ -1.12
HMGB1P40-201ENST00000525121 GCC2Q8IWJ2 1684 aa8.08□□□□□ -1.12
HMGB1P40-201ENST00000525121 MYO3AQ8NEV4 1616 aa8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 ERVK-7P63135 1459 aa8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 NLRP1Q9C000 1473 aa8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 VWDEQ8N2E2 1590 aa8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 HSPA2P54652 639 aa8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 FBXO31Q5XUX0 539 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 EFCAB6Q5THR3 1501 aa8.07□□□□□ -1.12
HMGB1P40-201ENST00000525121 A2ML1A8K2U0 1454 aa8.06□□□□□ -1.12
HMGB1P40-201ENST00000525121 RPRD2Q5VT52 1461 aaKnown RBP8.06□□□□□ -1.12
HMGB1P40-201ENST00000525121 SPATA31D1Q6ZQQ2 1576 aa8.06□□□□□ -1.12
HMGB1P40-201ENST00000525121 CEP170BQ9Y4F5 1589 aaPredicted RBP8.06□□□□□ -1.12
HMGB1P40-201ENST00000525121 TRIM52Q96A61 297 aa8.06□□□□□ -1.12
HMGB1P40-201ENST00000525121 TET3O43151 1660 aa8.05□□□□□ -1.12
HMGB1P40-201ENST00000525121 IQGAP3Q86VI3 1631 aa8.05□□□□□ -1.12
HMGB1P40-201ENST00000525121 STAG3Q9UJ98 1225 aa8.05□□□□□ -1.12
HMGB1P40-201ENST00000525121 DMRT2Q9Y5R5 561 aa8.05□□□□□ -1.12
HMGB1P40-201ENST00000525121 ZNF142P52746 1687 aaPredicted RBP8.05□□□□□ -1.12
HMGB1P40-201ENST00000525121 THEMISQ8N1K5 641 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P40-201ENST00000525121 SETD1BQ9UPS6 1966 aaKnown RBP8.04□□□□□ -1.12
HMGB1P40-201ENST00000525121 UGGT1Q9NYU2 1555 aa8.03□□□□□ -1.12
HMGB1P40-201ENST00000525121 PLA2R1Q13018 1463 aa8.03□□□□□ -1.12
HMGB1P40-201ENST00000525121 SETD5Q9C0A6 1442 aa8.03□□□□□ -1.12
HMGB1P40-201ENST00000525121 PKD2Q13563 968 aa8.02□□□□□ -1.13
HMGB1P40-201ENST00000525121 SLC4A1APQ9BWU0 796 aaKnown RBP8.02□□□□□ -1.13
HMGB1P40-201ENST00000525121 SLC52A1Q9NWF4 448 aa8.02□□□□□ -1.13
HMGB1P40-201ENST00000525121 NOS1P29475 1434 aa8.02□□□□□ -1.13
HMGB1P40-201ENST00000525121 ANKLE2Q86XL3 938 aa8□□□□□ -1.13
HMGB1P40-201ENST00000525121 EID1Q9Y6B2 187 aa8□□□□□ -1.13
HMGB1P40-201ENST00000525121 RAB3GAP2Q9H2M9 1393 aa7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 ADGRB3O60242 1522 aa7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 E9PCH4 1651 aa7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 PTPRTO14522 1441 aa7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 SYNMO15061 1565 aa7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 CHGAP10645 457 aaKnown RBP7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 NCKAP5LQ9HCH0 1330 aa7.99□□□□□ -1.13
HMGB1P40-201ENST00000525121 HDGFP51858 240 aaKnown RBP7.98□□□□□ -1.13
HMGB1P40-201ENST00000525121 IDI1Q13907 227 aa7.98□□□□□ -1.13
HMGB1P40-201ENST00000525121 PIK3C2BO00750 1634 aa7.98□□□□□ -1.13
HMGB1P40-201ENST00000525121 PPP1R15AO75807 674 aaPredicted RBP7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 MPHOSPH9Q99550 1183 aa7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 SCAF11Q99590 1463 aaKnown RBP7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 KDM5AP29375 1690 aaKnown RBP7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 UBR1Q8IWV7 1749 aa7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 TRPM2O94759 1503 aa7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 TMEM2Q9UHN6 1383 aa7.97□□□□□ -1.13
HMGB1P40-201ENST00000525121 NPHP4O75161 1426 aaPredicted RBP7.96□□□□□ -1.13
HMGB1P40-201ENST00000525121 SPHKAPQ2M3C7 1700 aa7.96□□□□□ -1.14
HMGB1P40-201ENST00000525121 HRCP23327 699 aa7.96□□□□□ -1.14
HMGB1P40-201ENST00000525121 TRIM26Q12899 539 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P40-201ENST00000525121 TXNDC2Q86VQ3 553 aa7.96□□□□□ -1.14
HMGB1P40-201ENST00000525121 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.96□□□□□ -1.14
HMGB1P40-201ENST00000525121 SLIT1O75093 1534 aa7.96□□□□□ -1.14
HMGB1P40-201ENST00000525121 POLR1AO95602 1720 aaPredicted RBP7.95□□□□□ -1.14
HMGB1P40-201ENST00000525121 STRCQ7RTU9 1775 aa7.95□□□□□ -1.14
HMGB1P40-201ENST00000525121 ZNF326Q5BKZ1 582 aaKnown RBP7.95□□□□□ -1.14
HMGB1P40-201ENST00000525121 BCANQ96GW7 911 aa7.95□□□□□ -1.14
HMGB1P40-201ENST00000525121 CCDC144AA2RUR9 1427 aa7.95□□□□□ -1.14
HMGB1P40-201ENST00000525121 ARHGAP23Q9P227 1491 aa7.94□□□□□ -1.14
HMGB1P40-201ENST00000525121 CFAP65Q6ZU64 1925 aaKnown RBP7.94□□□□□ -1.14
HMGB1P40-201ENST00000525121 RIMS2Q9UQ26 1411 aa7.94□□□□□ -1.14
HMGB1P40-201ENST00000525121 MED14O60244 1454 aa7.94□□□□□ -1.14
HMGB1P40-201ENST00000525121 NEURL4Q96JN8 1562 aa7.93□□□□□ -1.14
HMGB1P40-201ENST00000525121 TMEM131LA2VDJ0 1609 aa7.92□□□□□ -1.14
HMGB1P40-201ENST00000525121 IQGAP1P46940 1657 aa7.92□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms