RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 DNMT1P26358 1616 aaKnown RBP32.28■■■□□ 2.76
VPS28-203ENST00000524521 SHANK2Q9UPX8 1470 aa32.28■■■□□ 2.76
VPS28-203ENST00000524521 CROCC2H7BZ55 1655 aa32.27■■■□□ 2.76
VPS28-203ENST00000524521 KIF15Q9NS87 1388 aa32.25■■■□□ 2.75
VPS28-203ENST00000524521 DUOX2Q9NRD8 1548 aa32.24■■■□□ 2.75
VPS28-203ENST00000524521 PTPRKQ15262 1439 aa32.23■■■□□ 2.75
VPS28-203ENST00000524521 KDM5DQ9BY66 1539 aa32.21■■■□□ 2.75
VPS28-203ENST00000524521 ANKRD30AQ9BXX3 1397 aa32.19■■■□□ 2.74
VPS28-203ENST00000524521 EIF2AK4Q9P2K8 1649 aaKnown RBP32.18■■■□□ 2.74
VPS28-203ENST00000524521 FAM135AQ9P2D6 1515 aa32.18■■■□□ 2.74
VPS28-203ENST00000524521 FBXO31Q5XUX0 539 aaPredicted RBP32.17■■■□□ 2.74
VPS28-203ENST00000524521 RNF17Q9BXT8 1623 aaKnown RBP32.16■■■□□ 2.74
VPS28-203ENST00000524521 NCOA1Q15788 1441 aa32.12■■■□□ 2.73
VPS28-203ENST00000524521 ERBINQ96RT1 1412 aa32.12■■■□□ 2.73
VPS28-203ENST00000524521 DMRT2Q9Y5R5 561 aa32.1■■■□□ 2.73
VPS28-203ENST00000524521 PZPP20742 1482 aa32.1■■■□□ 2.73
VPS28-203ENST00000524521 GRWD1Q9BQ67 446 aaKnown RBP eCLIP32.09■■■□□ 2.733e-8■□□□□ 8.7
VPS28-203ENST00000524521 STRCQ7RTU9 1775 aa32.07■■■□□ 2.72
VPS28-203ENST00000524521 ABCC3O15438 1527 aa32.07■■■□□ 2.72
VPS28-203ENST00000524521 MROH1Q8NDA8 1641 aa32.07■■■□□ 2.72
VPS28-203ENST00000524521 MYO3AQ8NEV4 1616 aa32.07■■■□□ 2.72
VPS28-203ENST00000524521 TNRQ92752 1358 aa32.07■■■□□ 2.72
VPS28-203ENST00000524521 ADGRL2O95490 1459 aa32.05■■■□□ 2.72
VPS28-203ENST00000524521 ZC3H13Q5T200 1668 aaKnown RBP32.03■■■□□ 2.72
VPS28-203ENST00000524521 CEP170BQ9Y4F5 1589 aaPredicted RBP32.02■■■□□ 2.72
VPS28-203ENST00000524521 CAMSAP1Q5T5Y3 1602 aa32.02■■■□□ 2.72
VPS28-203ENST00000524521 ITGAEP38570 1179 aa32.01■■■□□ 2.71
VPS28-203ENST00000524521 ZNF142P52746 1687 aaPredicted RBP32■■■□□ 2.71
VPS28-203ENST00000524521 CEP152O94986 1710 aa32■■■□□ 2.71
VPS28-203ENST00000524521 A2ML1A8K2U0 1454 aa31.99■■■□□ 2.71
VPS28-203ENST00000524521 KANK1Q14678 1352 aa31.99■■■□□ 2.71
VPS28-203ENST00000524521 ILDR1Q86SU0 546 aaPredicted RBP31.98■■■□□ 2.71
VPS28-203ENST00000524521 PRDM15P57071 1507 aaPredicted RBP31.98■■■□□ 2.71
VPS28-203ENST00000524521 NCKAP5LQ9HCH0 1330 aa31.97■■■□□ 2.71
VPS28-203ENST00000524521 ANKRD50Q9ULJ7 1429 aa31.94■■■□□ 2.7
VPS28-203ENST00000524521 DEPDC5O75140 1603 aa31.94■■■□□ 2.7
VPS28-203ENST00000524521 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.94■■■□□ 2.75e-6■■■□□ 14.8
VPS28-203ENST00000524521 PTPRTO14522 1441 aa31.93■■■□□ 2.7
VPS28-203ENST00000524521 CFAP65Q6ZU64 1925 aaKnown RBP31.92■■■□□ 2.7
VPS28-203ENST00000524521 PKD2Q13563 968 aa31.9■■■□□ 2.7
VPS28-203ENST00000524521 ERVK-7P63135 1459 aa31.9■■■□□ 2.7
VPS28-203ENST00000524521 NLRP1Q9C000 1473 aa31.9■■■□□ 2.7
VPS28-203ENST00000524521 ROCK1Q13464 1354 aa31.89■■■□□ 2.7
VPS28-203ENST00000524521 PLA2R1Q13018 1463 aa31.89■■■□□ 2.7
VPS28-203ENST00000524521 SPATA31D1Q6ZQQ2 1576 aa31.89■■■□□ 2.7
VPS28-203ENST00000524521 ARHGAP31Q2M1Z3 1444 aa31.88■■■□□ 2.69
VPS28-203ENST00000524521 THEMISQ8N1K5 641 aaPredicted RBP31.87■■■□□ 2.69
VPS28-203ENST00000524521 CERKQ8TCT0 537 aa31.84■■■□□ 2.69
VPS28-203ENST00000524521 VWDEQ8N2E2 1590 aa31.83■■■□□ 2.69
VPS28-203ENST00000524521 RRBP1Q9P2E9 1410 aaKnown RBP31.83■■■□□ 2.69
VPS28-203ENST00000524521 UGGT1Q9NYU2 1555 aa31.82■■■□□ 2.68
VPS28-203ENST00000524521 LMTK2Q8IWU2 1503 aa31.81■■■□□ 2.68
VPS28-203ENST00000524521 FBXO41Q8TF61 875 aa31.81■■■□□ 2.68
VPS28-203ENST00000524521 ANKLE2Q86XL3 938 aa31.78■■■□□ 2.68
VPS28-203ENST00000524521 EFCAB6Q5THR3 1501 aa31.71■■■□□ 2.67
VPS28-203ENST00000524521 UNC13BO14795 1591 aa31.68■■■□□ 2.66
VPS28-203ENST00000524521 STAG3Q9UJ98 1225 aa31.68■■■□□ 2.66
VPS28-203ENST00000524521 POLR1AO95602 1720 aaPredicted RBP31.68■■■□□ 2.66
VPS28-203ENST00000524521 IDI1Q13907 227 aa31.67■■■□□ 2.66
VPS28-203ENST00000524521 ZNF335Q9H4Z2 1342 aaPredicted RBP31.67■■■□□ 2.66
VPS28-203ENST00000524521 NUP155O75694 1391 aa31.66■■■□□ 2.66
VPS28-203ENST00000524521 UBR1Q8IWV7 1749 aa31.65■■■□□ 2.66
VPS28-203ENST00000524521 NEURL4Q96JN8 1562 aa31.64■■■□□ 2.66
VPS28-203ENST00000524521 LTBP4Q8N2S1 1624 aa31.64■■■□□ 2.66
VPS28-203ENST00000524521 NOS1P29475 1434 aa31.64■■■□□ 2.66
VPS28-203ENST00000524521 TET3O43151 1660 aa31.64■■■□□ 2.65
VPS28-203ENST00000524521 RPRD2Q5VT52 1461 aaKnown RBP31.62■■■□□ 2.65
VPS28-203ENST00000524521 PIK3C2BO00750 1634 aa31.61■■■□□ 2.65
VPS28-203ENST00000524521 SYNMO15061 1565 aa31.61■■■□□ 2.65
VPS28-203ENST00000524521 NPHP4O75161 1426 aaPredicted RBP31.6■■■□□ 2.65
VPS28-203ENST00000524521 SLC52A1Q9NWF4 448 aa31.6■■■□□ 2.65
VPS28-203ENST00000524521 MED14O60244 1454 aa31.59■■■□□ 2.65
VPS28-203ENST00000524521 GCC2Q8IWJ2 1684 aa31.58■■■□□ 2.65
VPS28-203ENST00000524521 TXNDC2Q86VQ3 553 aa31.58■■■□□ 2.65
VPS28-203ENST00000524521 IQGAP3Q86VI3 1631 aa31.57■■■□□ 2.64
VPS28-203ENST00000524521 LTKP29376 864 aa31.56■■■□□ 2.64
VPS28-203ENST00000524521 EID1Q9Y6B2 187 aa31.56■■■□□ 2.64
VPS28-203ENST00000524521 NAIPQ13075 1403 aa31.56■■■□□ 2.64
VPS28-203ENST00000524521 ARHGAP23Q9P227 1491 aa31.53■■■□□ 2.64
VPS28-203ENST00000524521 SLIT1O75093 1534 aa31.53■■■□□ 2.64
VPS28-203ENST00000524521 TMEM2Q9UHN6 1383 aa31.52■■■□□ 2.64
VPS28-203ENST00000524521 SCAF11Q99590 1463 aaKnown RBP31.52■■■□□ 2.64
VPS28-203ENST00000524521 E9PCH4 1651 aa31.51■■■□□ 2.64
VPS28-203ENST00000524521 IQGAP1P46940 1657 aa31.5■■■□□ 2.63
VPS28-203ENST00000524521 KDM5AP29375 1690 aaKnown RBP31.48■■■□□ 2.63
VPS28-203ENST00000524521 HFM1A2PYH4 1435 aa31.47■■■□□ 2.63
VPS28-203ENST00000524521 ADGRB3O60242 1522 aa31.45■■■□□ 2.63
VPS28-203ENST00000524521 CHGAP10645 457 aaKnown RBP31.45■■■□□ 2.63
VPS28-203ENST00000524521 TRIM52Q96A61 297 aa31.45■■■□□ 2.63
VPS28-203ENST00000524521 IQSEC2Q5JU85 1478 aa31.45■■■□□ 2.62
VPS28-203ENST00000524521 CPS1P31327 1500 aa31.38■■■□□ 2.61
VPS28-203ENST00000524521 HDGFP51858 240 aaKnown RBP31.36■■■□□ 2.61
VPS28-203ENST00000524521 TMEM131LA2VDJ0 1609 aa31.35■■■□□ 2.61
VPS28-203ENST00000524521 BCANQ96GW7 911 aa31.35■■■□□ 2.61
VPS28-203ENST00000524521 MYO5BQ9ULV0 1848 aa31.35■■■□□ 2.61
VPS28-203ENST00000524521 UBAP1LF5GYI3 381 aa31.34■■■□□ 2.61
VPS28-203ENST00000524521 PPP1R15AO75807 674 aaPredicted RBP31.32■■■□□ 2.6
VPS28-203ENST00000524521 SLC26A8Q96RN1 970 aa31.32■■■□□ 2.6
VPS28-203ENST00000524521 SENP3Q9H4L4 574 aaPredicted RBP31.32■■■□□ 2.6
VPS28-203ENST00000524521 RIMS2Q9UQ26 1411 aa31.32■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms