RNA–Protein interactions for RNA: ENST00000524162.5

TRAPPC9-215, Transcript of trafficking protein particle complex 9, human

TSL 4

Gene TRAPPC9, Length 591 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRAPPC9-215	ENST00000524162	ERBIN	Q96RT1	1412 aa		32.22	■■■□□ 2.75
TRAPPC9-215	ENST00000524162	ADGRL2	O95490	1459 aa		32.22	■■■□□ 2.75
TRAPPC9-215	ENST00000524162	KDM5D	Q9BY66	1539 aa		32.21	■■■□□ 2.75
TRAPPC9-215	ENST00000524162	KIF15	Q9NS87	1388 aa		32.21	■■■□□ 2.75
TRAPPC9-215	ENST00000524162	ANKRD30A	Q9BXX3	1397 aa		32.19	■■■□□ 2.74
TRAPPC9-215	ENST00000524162	NCOA1	Q15788	1441 aa		32.18	■■■□□ 2.74
TRAPPC9-215	ENST00000524162	PLPPR3	Q6T4P5	718 aa		32.17	■■■□□ 2.74
TRAPPC9-215	ENST00000524162	ZC3H13	Q5T200	1668 aa	Known RBP	32.17	■■■□□ 2.74
TRAPPC9-215	ENST00000524162	UHRF1BP1	Q6BDS2	1440 aa		32.17	■■■□□ 2.74
TRAPPC9-215	ENST00000524162	FAM50A	Q14320	339 aa	Known RBP	32.15	■■■□□ 2.74
TRAPPC9-215	ENST00000524162	PTPRK	Q15262	1439 aa		32.13	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	MROH1	Q8NDA8	1641 aa		32.12	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	WASHC2C	Q9Y4E1	1318 aa		32.11	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	DEPDC5	O75140	1603 aa		32.11	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	RRP7BP	Q9NSQ0	103 aa		32.1	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	PRDM15	P57071	1507 aa	Predicted RBP	32.09	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	PZP	P20742	1482 aa		32.09	■■■□□ 2.73
TRAPPC9-215	ENST00000524162	ABCC3	O15438	1527 aa		32.06	■■■□□ 2.72
TRAPPC9-215	ENST00000524162	ROCK1	Q13464	1354 aa		32.05	■■■□□ 2.72
TRAPPC9-215	ENST00000524162	RRBP1	Q9P2E9	1410 aa	Known RBP	32.04	■■■□□ 2.72
TRAPPC9-215	ENST00000524162	CHIC2	Q9UKJ5	165 aa		32.04	■■■□□ 2.72
TRAPPC9-215	ENST00000524162	ZNF142	P52746	1687 aa	Predicted RBP	32.04	■■■□□ 2.72
TRAPPC9-215	ENST00000524162	HSPA2	P54652	639 aa		32.01	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	MYO3A	Q8NEV4	1616 aa		32	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.99	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	CEP152	O94986	1710 aa		31.97	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	CAMSAP1	Q5T5Y3	1602 aa		31.97	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	ARHGAP31	Q2M1Z3	1444 aa		31.96	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	VWDE	Q8N2E2	1590 aa		31.96	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	ANKRD50	Q9ULJ7	1429 aa		31.96	■■■□□ 2.71
TRAPPC9-215	ENST00000524162	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	31.94	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	LMTK2	Q8IWU2	1503 aa		31.94	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	STRC	Q7RTU9	1775 aa		31.94	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	KANK1	Q14678	1352 aa		31.94	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	SPATA31D1	Q6ZQQ2	1576 aa		31.92	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	TNR	Q92752	1358 aa		31.92	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	A2ML1	A8K2U0	1454 aa		31.91	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	NLRP1	Q9C000	1473 aa		31.9	■■■□□ 2.7
TRAPPC9-215	ENST00000524162	FBXO31	Q5XUX0	539 aa	Predicted RBP	31.88	■■■□□ 2.69
TRAPPC9-215	ENST00000524162	DMRT2	Q9Y5R5	561 aa		31.88	■■■□□ 2.69
TRAPPC9-215	ENST00000524162	PLA2R1	Q13018	1463 aa		31.87	■■■□□ 2.69
TRAPPC9-215	ENST00000524162	ERVK-7	P63135	1459 aa		31.85	■■■□□ 2.69
TRAPPC9-215	ENST00000524162	UNC13B	O14795	1591 aa		31.84	■■■□□ 2.69
TRAPPC9-215	ENST00000524162	CFAP65	Q6ZU64	1925 aa	Known RBP	31.83	■■■□□ 2.69
TRAPPC9-215	ENST00000524162	PTPRT	O14522	1441 aa		31.81	■■■□□ 2.68
TRAPPC9-215	ENST00000524162	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	31.79	■■■□□ 2.68
TRAPPC9-215	ENST00000524162	EFCAB6	Q5THR3	1501 aa		31.78	■■■□□ 2.68
TRAPPC9-215	ENST00000524162	RPRD2	Q5VT52	1461 aa	Known RBP	31.76	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	TET3	O43151	1660 aa		31.75	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	ITGAE	P38570	1179 aa		31.74	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	PKD2	Q13563	968 aa		31.74	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	GCC2	Q8IWJ2	1684 aa		31.73	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	UGGT1	Q9NYU2	1555 aa		31.73	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	IQGAP3	Q86VI3	1631 aa		31.71	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	THEMIS	Q8N1K5	641 aa	Predicted RBP	31.71	■■■□□ 2.67
TRAPPC9-215	ENST00000524162	KDM5A	P29375	1690 aa	Known RBP	31.68	■■■□□ 2.66
TRAPPC9-215	ENST00000524162	NOS1	P29475	1434 aa		31.67	■■■□□ 2.66
TRAPPC9-215	ENST00000524162	POLR1A	O95602	1720 aa	Predicted RBP	31.67	■■■□□ 2.66
TRAPPC9-215	ENST00000524162	UBR1	Q8IWV7	1749 aa		31.65	■■■□□ 2.66
TRAPPC9-215	ENST00000524162	NAIP	Q13075	1403 aa		31.65	■■■□□ 2.66
TRAPPC9-215	ENST00000524162	HFM1	A2PYH4	1435 aa		31.64	■■■□□ 2.66
TRAPPC9-215	ENST00000524162	SYNM	O15061	1565 aa		31.6	■■■□□ 2.65
TRAPPC9-215	ENST00000524162	NUP155	O75694	1391 aa		31.58	■■■□□ 2.65
TRAPPC9-215	ENST00000524162	NCKAP5L	Q9HCH0	1330 aa		31.58	■■■□□ 2.65
TRAPPC9-215	ENST00000524162	SLC52A1	Q9NWF4	448 aa		31.58	■■■□□ 2.65
TRAPPC9-215	ENST00000524162		E9PCH4	1651 aa		31.57	■■■□□ 2.65
TRAPPC9-215	ENST00000524162	ANKLE2	Q86XL3	938 aa		31.57	■■■□□ 2.64
TRAPPC9-215	ENST00000524162	MED14	O60244	1454 aa		31.57	■■■□□ 2.64
TRAPPC9-215	ENST00000524162	PIK3C2B	O00750	1634 aa		31.57	■■■□□ 2.64
TRAPPC9-215	ENST00000524162	NEURL4	Q96JN8	1562 aa		31.56	■■■□□ 2.64
TRAPPC9-215	ENST00000524162	SLIT1	O75093	1534 aa		31.54	■■■□□ 2.64
TRAPPC9-215	ENST00000524162	ARHGAP23	Q9P227	1491 aa		31.53	■■■□□ 2.64
TRAPPC9-215	ENST00000524162	IDI1	Q13907	227 aa		31.5	■■■□□ 2.63
TRAPPC9-215	ENST00000524162	LTBP4	Q8N2S1	1624 aa		31.48	■■■□□ 2.63
TRAPPC9-215	ENST00000524162	ADGRB3	O60242	1522 aa		31.46	■■■□□ 2.63
TRAPPC9-215	ENST00000524162	CERK	Q8TCT0	537 aa		31.45	■■■□□ 2.63
TRAPPC9-215	ENST00000524162	ACIN1	Q9UKV3	1341 aa	Known RBP	31.45	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	IQGAP1	P46940	1657 aa		31.44	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	SCAF11	Q99590	1463 aa	Known RBP	31.44	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	TMEM2	Q9UHN6	1383 aa		31.43	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	NPHP4	O75161	1426 aa	Predicted RBP	31.43	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	IQSEC2	Q5JU85	1478 aa		31.41	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	FBXO41	Q8TF61	875 aa		31.4	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	STAG3	Q9UJ98	1225 aa		31.4	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	SPHKAP	Q2M3C7	1700 aa		31.4	■■■□□ 2.62
TRAPPC9-215	ENST00000524162	EID1	Q9Y6B2	187 aa		31.38	■■■□□ 2.61
TRAPPC9-215	ENST00000524162	TMEM131L	A2VDJ0	1609 aa		31.38	■■■□□ 2.61
TRAPPC9-215	ENST00000524162	MYO5B	Q9ULV0	1848 aa		31.35	■■■□□ 2.61
TRAPPC9-215	ENST00000524162	LTK	P29376	864 aa		31.34	■■■□□ 2.61
TRAPPC9-215	ENST00000524162	ILDR1	Q86SU0	546 aa	Predicted RBP	31.34	■■■□□ 2.61
TRAPPC9-215	ENST00000524162	TXNDC2	Q86VQ3	553 aa		31.34	■■■□□ 2.61
TRAPPC9-215	ENST00000524162	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	31.32	■■■□□ 2.6
TRAPPC9-215	ENST00000524162	CPS1	P31327	1500 aa		31.3	■■■□□ 2.6
TRAPPC9-215	ENST00000524162	ZFYVE9	O95405	1425 aa		31.28	■■■□□ 2.6
TRAPPC9-215	ENST00000524162	HDGF	P51858	240 aa	Known RBP	31.28	■■■□□ 2.6
TRAPPC9-215	ENST00000524162	TRPM2	O94759	1503 aa		31.28	■■■□□ 2.6
TRAPPC9-215	ENST00000524162	TRIM52	Q96A61	297 aa		31.27	■■■□□ 2.6
TRAPPC9-215	ENST00000524162	SETD5	Q9C0A6	1442 aa		31.25	■■■□□ 2.59
TRAPPC9-215	ENST00000524162	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.23	■■■□□ 2.59
TRAPPC9-215	ENST00000524162	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	31.21	■■■□□ 2.59

Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms