RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 ANKRD50Q9ULJ7 1429 aa19.47■□□□□ 0.71
CPNE3-205ENST00000522240 ABCA6Q8N139 1617 aa19.46■□□□□ 0.71
CPNE3-205ENST00000522240 EIF2AK4Q9P2K8 1649 aaKnown RBP19.45■□□□□ 0.7
CPNE3-205ENST00000522240 DIP2CQ9Y2E4 1556 aa19.44■□□□□ 0.7
CPNE3-205ENST00000522240 ARHGEF40Q8TER5 1519 aa19.41■□□□□ 0.7
CPNE3-205ENST00000522240 UNC13BO14795 1591 aa19.41■□□□□ 0.7
CPNE3-205ENST00000522240 RAPGEF3O95398 923 aa19.41■□□□□ 0.7
CPNE3-205ENST00000522240 KDM5DQ9BY66 1539 aa19.41■□□□□ 0.7
CPNE3-205ENST00000522240 REREQ9P2R6 1566 aa19.4■□□□□ 0.7
CPNE3-205ENST00000522240 BCORL1Q5H9F3 1711 aa19.4■□□□□ 0.7
CPNE3-205ENST00000522240 A2MP01023 1474 aa19.39■□□□□ 0.69
CPNE3-205ENST00000522240 DEPDC5O75140 1603 aa19.38■□□□□ 0.69
CPNE3-205ENST00000522240 MAPK8IP2Q13387 824 aaPredicted RBP19.38■□□□□ 0.69
CPNE3-205ENST00000522240 DHX29Q7Z478 1369 aaKnown RBP19.37■□□□□ 0.69
CPNE3-205ENST00000522240 YEATS2Q9ULM3 1422 aa19.36■□□□□ 0.69
CPNE3-205ENST00000522240 DHX57Q6P158 1386 aaKnown RBP19.36■□□□□ 0.69
CPNE3-205ENST00000522240 MYT1LQ9UL68 1186 aa19.35■□□□□ 0.69
CPNE3-205ENST00000522240 RNF17Q9BXT8 1623 aaKnown RBP19.35■□□□□ 0.69
CPNE3-205ENST00000522240 PRDM15P57071 1507 aaPredicted RBP19.33■□□□□ 0.68
CPNE3-205ENST00000522240 ATP10AO60312 1499 aa19.32■□□□□ 0.68
CPNE3-205ENST00000522240 IQGAP3Q86VI3 1631 aa19.32■□□□□ 0.68
CPNE3-205ENST00000522240 PZPP20742 1482 aa19.3■□□□□ 0.68
CPNE3-205ENST00000522240 MROH1Q8NDA8 1641 aa19.3■□□□□ 0.68
CPNE3-205ENST00000522240 ILDR1Q86SU0 546 aaPredicted RBP19.3■□□□□ 0.68
CPNE3-205ENST00000522240 AGLP35573 1532 aa19.3■□□□□ 0.68
CPNE3-205ENST00000522240 CLSPNQ9HAW4 1339 aa19.29■□□□□ 0.68
CPNE3-205ENST00000522240 VWDEQ8N2E2 1590 aa19.28■□□□□ 0.68
CPNE3-205ENST00000522240 FAM135AQ9P2D6 1515 aa19.27■□□□□ 0.68
CPNE3-205ENST00000522240 CCER1Q8TC90 406 aaPredicted RBP19.27■□□□□ 0.68
CPNE3-205ENST00000522240 TRIM52Q96A61 297 aa19.25■□□□□ 0.67
CPNE3-205ENST00000522240 NUP155O75694 1391 aa19.24■□□□□ 0.67
CPNE3-205ENST00000522240 ZC3H13Q5T200 1668 aaKnown RBP19.23■□□□□ 0.67
CPNE3-205ENST00000522240 LMTK2Q8IWU2 1503 aa19.22■□□□□ 0.67
CPNE3-205ENST00000522240 TET3O43151 1660 aa19.21■□□□□ 0.67
CPNE3-205ENST00000522240 KIF3BO15066 747 aa19.21■□□□□ 0.67
CPNE3-205ENST00000522240 SIGLEC1Q9BZZ2 1709 aa19.21■□□□□ 0.67
CPNE3-205ENST00000522240 KANK1Q14678 1352 aa19.2■□□□□ 0.66
CPNE3-205ENST00000522240 MPHOSPH9Q99550 1183 aa19.19■□□□□ 0.66
CPNE3-205ENST00000522240 CEP152O94986 1710 aa19.17■□□□□ 0.66
CPNE3-205ENST00000522240 ABCC3O15438 1527 aa19.16■□□□□ 0.66
CPNE3-205ENST00000522240 EFCAB6Q5THR3 1501 aa19.16■□□□□ 0.66
CPNE3-205ENST00000522240 RNF216Q9NWF9 866 aaPredicted RBP19.14■□□□□ 0.65
CPNE3-205ENST00000522240 E9PCH4 1651 aa19.14■□□□□ 0.65
CPNE3-205ENST00000522240 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.13■□□□□ 0.65
CPNE3-205ENST00000522240 CAMSAP1Q5T5Y3 1602 aa19.12■□□□□ 0.65
CPNE3-205ENST00000522240 ZEB1P37275 1124 aaPredicted RBP19.11■□□□□ 0.65
CPNE3-205ENST00000522240 RPRD2Q5VT52 1461 aaKnown RBP19.1■□□□□ 0.65
CPNE3-205ENST00000522240 ANKRD30BQ9BXX2 1392 aa19.1■□□□□ 0.65
CPNE3-205ENST00000522240 ZBTB22O15209 634 aa19.1■□□□□ 0.65
CPNE3-205ENST00000522240 PKD2Q13563 968 aa19.1■□□□□ 0.65
CPNE3-205ENST00000522240 GGT6Q6P531 493 aa19.08■□□□□ 0.64
CPNE3-205ENST00000522240 SPHKAPQ2M3C7 1700 aa19.08■□□□□ 0.64
CPNE3-205ENST00000522240 ARHGAP31Q2M1Z3 1444 aa19.07■□□□□ 0.64
CPNE3-205ENST00000522240 TRPM2O94759 1503 aa19.06■□□□□ 0.64
CPNE3-205ENST00000522240 ADAMTSL3P82987 1691 aa19.06■□□□□ 0.64
CPNE3-205ENST00000522240 PTPRMP28827 1452 aa19.06■□□□□ 0.64
CPNE3-205ENST00000522240 CLTCQ00610 1675 aaKnown RBP19.05■□□□□ 0.64
CPNE3-205ENST00000522240 PTPRTO14522 1441 aa19.04■□□□□ 0.64
CPNE3-205ENST00000522240 MROH2AA6NES4 1674 aa19.04■□□□□ 0.64
CPNE3-205ENST00000522240 WASHC2CQ9Y4E1 1318 aa19.03■□□□□ 0.64
CPNE3-205ENST00000522240 NPATQ14207 1427 aa19.03■□□□□ 0.64
CPNE3-205ENST00000522240 CNTLNQ9NXG0 1405 aa19.02■□□□□ 0.64
CPNE3-205ENST00000522240 PLA2R1Q13018 1463 aa19.02■□□□□ 0.63
CPNE3-205ENST00000522240 ARID4BQ4LE39 1312 aaPredicted RBP19■□□□□ 0.63
CPNE3-205ENST00000522240 FER1L4A9Z1Z3 1794 aa18.99■□□□□ 0.63
CPNE3-205ENST00000522240 CCDC144AA2RUR9 1427 aa18.99■□□□□ 0.63
CPNE3-205ENST00000522240 PREX1Q8TCU6 1659 aa18.98■□□□□ 0.63
CPNE3-205ENST00000522240 FBXO41Q8TF61 875 aa18.97■□□□□ 0.63
CPNE3-205ENST00000522240 TIMELESSQ9UNS1 1208 aa18.97■□□□□ 0.63
CPNE3-205ENST00000522240 NOS1P29475 1434 aa18.97■□□□□ 0.63
CPNE3-205ENST00000522240 CLTCL1P53675 1640 aa18.96■□□□□ 0.63
CPNE3-205ENST00000522240 SIN3AQ96ST3 1273 aa18.96■□□□□ 0.63
CPNE3-205ENST00000522240 DMRT2Q9Y5R5 561 aa18.96■□□□□ 0.63
CPNE3-205ENST00000522240 NEURL4Q96JN8 1562 aa18.96■□□□□ 0.63
CPNE3-205ENST00000522240 SYNMO15061 1565 aa18.94■□□□□ 0.62
CPNE3-205ENST00000522240 SPATA31D1Q6ZQQ2 1576 aa18.94■□□□□ 0.62
CPNE3-205ENST00000522240 PIK3C2BO00750 1634 aa18.94■□□□□ 0.62
CPNE3-205ENST00000522240 MLECQ14165 292 aa18.94■□□□□ 0.62
CPNE3-205ENST00000522240 ERVK-7P63135 1459 aa18.94■□□□□ 0.62
CPNE3-205ENST00000522240 TONSLQ96HA7 1378 aa18.93■□□□□ 0.62
CPNE3-205ENST00000522240 FOXD4L1Q9NU39 408 aa18.93■□□□□ 0.62
CPNE3-205ENST00000522240 MADDQ8WXG6 1647 aa18.92■□□□□ 0.62
CPNE3-205ENST00000522240 ESF1Q9H501 851 aaKnown RBP18.92■□□□□ 0.62
CPNE3-205ENST00000522240 NEUROD1Q13562 356 aa18.91■□□□□ 0.62
CPNE3-205ENST00000522240 LMTK3Q96Q04 1460 aa18.89■□□□□ 0.61
CPNE3-205ENST00000522240 UGGT1Q9NYU2 1555 aa18.89■□□□□ 0.61
CPNE3-205ENST00000522240 C3P01024 1663 aa18.89■□□□□ 0.61
CPNE3-205ENST00000522240 KIF1BO60333 1816 aa18.88■□□□□ 0.61
CPNE3-205ENST00000522240 ZMYM3Q14202 1370 aa18.88■□□□□ 0.61
CPNE3-205ENST00000522240 ADGRB3O60242 1522 aa18.88■□□□□ 0.61
CPNE3-205ENST00000522240 RIMS1Q86UR5 1692 aaKnown RBP18.87■□□□□ 0.61
CPNE3-205ENST00000522240 SPATA31E1Q6ZUB1 1445 aa18.86■□□□□ 0.61
CPNE3-205ENST00000522240 CFAP65Q6ZU64 1925 aaKnown RBP18.85■□□□□ 0.61
CPNE3-205ENST00000522240 HOXD11P31277 338 aaPredicted RBP18.85■□□□□ 0.61
CPNE3-205ENST00000522240 SLC52A1Q9NWF4 448 aa18.82■□□□□ 0.6
CPNE3-205ENST00000522240 KDM5AP29375 1690 aaKnown RBP18.81■□□□□ 0.6
CPNE3-205ENST00000522240 IFT172Q9UG01 1749 aa18.8■□□□□ 0.6
CPNE3-205ENST00000522240 L3MBTL2Q969R5 705 aa18.79■□□□□ 0.6
CPNE3-205ENST00000522240 TNRQ92752 1358 aa18.79■□□□□ 0.6
CPNE3-205ENST00000522240 TMEM131LA2VDJ0 1609 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms