RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 ABCC5O15440 1437 aa46.28■■■■■ 5
SYNPO-203ENST00000518872 RNF17Q9BXT8 1623 aaKnown RBP46.26■■■■■ 5
SYNPO-203ENST00000518872 STRCQ7RTU9 1775 aa46.24■■■■■ 4.99
SYNPO-203ENST00000518872 DAPK1P53355 1430 aa46.21■■■■■ 4.99
SYNPO-203ENST00000518872 DUOX2Q9NRD8 1548 aa46.21■■■■■ 4.99
SYNPO-203ENST00000518872 ZNF142P52746 1687 aaPredicted RBP46.18■■■■■ 4.98
SYNPO-203ENST00000518872 MYO3AQ8NEV4 1616 aa46.17■■■■■ 4.98
SYNPO-203ENST00000518872 PZPP20742 1482 aa46.12■■■■■ 4.97
SYNPO-203ENST00000518872 ZC3H13Q5T200 1668 aaKnown RBP46.12■■■■■ 4.97
SYNPO-203ENST00000518872 WASHC2CQ9Y4E1 1318 aa46.11■■■■■ 4.97
SYNPO-203ENST00000518872 KIF15Q9NS87 1388 aa46.1■■■■■ 4.97
SYNPO-203ENST00000518872 DMRT2Q9Y5R5 561 aa46.09■■■■■ 4.97
SYNPO-203ENST00000518872 MROH1Q8NDA8 1641 aa46.09■■■■■ 4.97
SYNPO-203ENST00000518872 ERBINQ96RT1 1412 aa46.07■■■■■ 4.97
SYNPO-203ENST00000518872 CEP170BQ9Y4F5 1589 aaPredicted RBP46.07■■■■■ 4.97
SYNPO-203ENST00000518872 NCOA1Q15788 1441 aa46.06■■■■■ 4.96
SYNPO-203ENST00000518872 ILDR1Q86SU0 546 aaPredicted RBP46.06■■■■■ 4.96
SYNPO-203ENST00000518872 ABCC3O15438 1527 aa46.03■■■■■ 4.96
SYNPO-203ENST00000518872 CAMSAP1Q5T5Y3 1602 aa46.01■■■■■ 4.96
SYNPO-203ENST00000518872 PTPRTO14522 1441 aa46.01■■■■■ 4.96
SYNPO-203ENST00000518872 ANKRD30AQ9BXX3 1397 aa45.98■■■■■ 4.95
SYNPO-203ENST00000518872 A2ML1A8K2U0 1454 aa45.97■■■■■ 4.95
SYNPO-203ENST00000518872 PRDM15P57071 1507 aaPredicted RBP45.97■■■■■ 4.95
SYNPO-203ENST00000518872 ADGRL2O95490 1459 aa45.96■■■■■ 4.95
SYNPO-203ENST00000518872 PLA2R1Q13018 1463 aa45.96■■■■■ 4.95
SYNPO-203ENST00000518872 RRP7BPQ9NSQ0 103 aa45.96■■■■■ 4.95
SYNPO-203ENST00000518872 TNRQ92752 1358 aa45.95■■■■■ 4.95
SYNPO-203ENST00000518872 DEPDC5O75140 1603 aa45.94■■■■■ 4.94
SYNPO-203ENST00000518872 FBXO31Q5XUX0 539 aaPredicted RBP45.93■■■■■ 4.94
SYNPO-203ENST00000518872 CEP152O94986 1710 aa45.91■■■■■ 4.94
SYNPO-203ENST00000518872 FAM50AQ14320 339 aaKnown RBP45.87■■■■■ 4.93
SYNPO-203ENST00000518872 SPATA31D1Q6ZQQ2 1576 aa45.86■■■■■ 4.93
SYNPO-203ENST00000518872 CHIC2Q9UKJ5 165 aa45.85■■■■■ 4.93
SYNPO-203ENST00000518872 FBXO41Q8TF61 875 aa45.84■■■■■ 4.93
SYNPO-203ENST00000518872 NLRP1Q9C000 1473 aa45.84■■■■■ 4.93
SYNPO-203ENST00000518872 PKD2Q13563 968 aa45.8■■■■■ 4.92
SYNPO-203ENST00000518872 ARHGAP31Q2M1Z3 1444 aa45.78■■■■■ 4.92
SYNPO-203ENST00000518872 ERVK-7P63135 1459 aa45.77■■■■■ 4.92
SYNPO-203ENST00000518872 VWDEQ8N2E2 1590 aa45.75■■■■■ 4.91
SYNPO-203ENST00000518872 CERKQ8TCT0 537 aa45.74■■■■■ 4.91
SYNPO-203ENST00000518872 LMTK2Q8IWU2 1503 aa45.72■■■■■ 4.91
SYNPO-203ENST00000518872 KANK1Q14678 1352 aa45.71■■■■■ 4.91
SYNPO-203ENST00000518872 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP45.71■■■■■ 4.91
SYNPO-203ENST00000518872 NCKAP5LQ9HCH0 1330 aa45.71■■■■■ 4.91
SYNPO-203ENST00000518872 CFAP65Q6ZU64 1925 aaKnown RBP45.69■■■■■ 4.91
SYNPO-203ENST00000518872 UGGT1Q9NYU2 1555 aa45.67■■■■■ 4.9
SYNPO-203ENST00000518872 POLR1AO95602 1720 aaPredicted RBP45.66■■■■■ 4.9
SYNPO-203ENST00000518872 ANKRD50Q9ULJ7 1429 aa45.66■■■■■ 4.9
SYNPO-203ENST00000518872 ROCK1Q13464 1354 aa45.63■■■■■ 4.9
SYNPO-203ENST00000518872 LTBP4Q8N2S1 1624 aa45.63■■■■■ 4.89
SYNPO-203ENST00000518872 GRWD1Q9BQ67 446 aaKnown RBP eCLIP45.62■■■■■ 4.89
SYNPO-203ENST00000518872 THEMISQ8N1K5 641 aaPredicted RBP45.61■■■■■ 4.89
SYNPO-203ENST00000518872 NEURL4Q96JN8 1562 aa45.57■■■■■ 4.89
SYNPO-203ENST00000518872 PPARGC1BQ86YN6 1023 aaKnown RBP45.55■■■■■ 4.88
SYNPO-203ENST00000518872 EFCAB6Q5THR3 1501 aa45.52■■■■■ 4.88
SYNPO-203ENST00000518872 UBR1Q8IWV7 1749 aa45.51■■■■■ 4.88
SYNPO-203ENST00000518872 ANKLE2Q86XL3 938 aa45.48■■■■■ 4.87
SYNPO-203ENST00000518872 RRBP1Q9P2E9 1410 aaKnown RBP45.48■■■■■ 4.87
SYNPO-203ENST00000518872 UNC13BO14795 1591 aa45.48■■■■■ 4.87
SYNPO-203ENST00000518872 IQSEC2Q5JU85 1478 aa45.48■■■■■ 4.87
SYNPO-203ENST00000518872 MED14O60244 1454 aa45.47■■■■■ 4.87
SYNPO-203ENST00000518872 RPRD2Q5VT52 1461 aaKnown RBP45.42■■■■■ 4.86
SYNPO-203ENST00000518872 TET3O43151 1660 aa45.41■■■■■ 4.86
SYNPO-203ENST00000518872 NOS1P29475 1434 aa45.4■■■■■ 4.86
SYNPO-203ENST00000518872 KDM5AP29375 1690 aaKnown RBP45.4■■■■■ 4.86
SYNPO-203ENST00000518872 ZNF335Q9H4Z2 1342 aaPredicted RBP45.39■■■■■ 4.86
SYNPO-203ENST00000518872 PIK3C2BO00750 1634 aa45.37■■■■■ 4.85
SYNPO-203ENST00000518872 SYNMO15061 1565 aa45.37■■■■■ 4.85
SYNPO-203ENST00000518872 GCC2Q8IWJ2 1684 aa45.35■■■■■ 4.85
SYNPO-203ENST00000518872 SLIT1O75093 1534 aa45.35■■■■■ 4.85
SYNPO-203ENST00000518872 ARHGAP23Q9P227 1491 aa45.35■■■■■ 4.85
SYNPO-203ENST00000518872 NPHP4O75161 1426 aaPredicted RBP45.35■■■■■ 4.85
SYNPO-203ENST00000518872 IQGAP1P46940 1657 aa45.33■■■■■ 4.85
SYNPO-203ENST00000518872 ITGAEP38570 1179 aa45.3■■■■■ 4.84
SYNPO-203ENST00000518872 IQGAP3Q86VI3 1631 aa45.3■■■■■ 4.84
SYNPO-203ENST00000518872 SCAF11Q99590 1463 aaKnown RBP45.25■■■■■ 4.83
SYNPO-203ENST00000518872 IDI1Q13907 227 aa45.24■■■■■ 4.83
SYNPO-203ENST00000518872 SLC52A1Q9NWF4 448 aa45.22■■■■■ 4.83
SYNPO-203ENST00000518872 CPS1P31327 1500 aa45.21■■■■■ 4.83
SYNPO-203ENST00000518872 TMEM2Q9UHN6 1383 aa45.19■■■■■ 4.82
SYNPO-203ENST00000518872 E9PCH4 1651 aa45.18■■■■■ 4.82
SYNPO-203ENST00000518872 ADGRB3O60242 1522 aa45.17■■■■■ 4.82
SYNPO-203ENST00000518872 LTKP29376 864 aa45.14■■■■■ 4.82
SYNPO-203ENST00000518872 NUP155O75694 1391 aa45.13■■■■■ 4.82
SYNPO-203ENST00000518872 STAG3Q9UJ98 1225 aa45.13■■■■■ 4.82
SYNPO-203ENST00000518872 TXNDC2Q86VQ3 553 aa45.12■■■■■ 4.81
SYNPO-203ENST00000518872 EID1Q9Y6B2 187 aa45.1■■■■■ 4.81
SYNPO-203ENST00000518872 NAIPQ13075 1403 aa45.07■■■■■ 4.81
SYNPO-203ENST00000518872 STRCP1A6NGW2 1772 aa45.01■■■■■ 4.8
SYNPO-203ENST00000518872 MYO5BQ9ULV0 1848 aa45■■■■■ 4.79
SYNPO-203ENST00000518872 TMEM131LA2VDJ0 1609 aa45■■■■■ 4.79
SYNPO-203ENST00000518872 HFM1A2PYH4 1435 aa44.98■■■■■ 4.79
SYNPO-203ENST00000518872 ZFYVE9O95405 1425 aa44.92■■■■■ 4.78
SYNPO-203ENST00000518872 UBAP1LF5GYI3 381 aa44.89■■■■■ 4.78
SYNPO-203ENST00000518872 SPHKAPQ2M3C7 1700 aa44.89■■■■■ 4.78
SYNPO-203ENST00000518872 LRRC7Q96NW7 1537 aa44.86■■■■■ 4.77
SYNPO-203ENST00000518872 RIMS2Q9UQ26 1411 aa44.82■■■■■ 4.77
SYNPO-203ENST00000518872 HDGFP51858 240 aaKnown RBP44.8■■■■■ 4.76
SYNPO-203ENST00000518872 PLEKHG1Q9ULL1 1385 aa44.77■■■■■ 4.76
SYNPO-203ENST00000518872 TOM1O60784 492 aa44.75■■■■■ 4.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms