RNA–Protein interactions for RNA: ENST00000517352.1

TNFRSF11B-202, Transcript of TNF receptor superfamily member 11b, humanhuman

TSL 1 (best)

Gene TNFRSF11B, Length 1,144 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF11B-202ENST00000517352 PTPRKQ15262 1439 aa11.54□□□□□ -0.56
TNFRSF11B-202ENST00000517352 PPP4R3CPQ6ZMV5 832 aa11.54□□□□□ -0.56
TNFRSF11B-202ENST00000517352 STRCQ7RTU9 1775 aa11.53□□□□□ -0.56
TNFRSF11B-202ENST00000517352 CLTCQ00610 1675 aaKnown RBP11.52□□□□□ -0.56
TNFRSF11B-202ENST00000517352 CCDC141Q6ZP82 1450 aa11.52□□□□□ -0.56
TNFRSF11B-202ENST00000517352 LOC105371045A0A1W2PR82 267 aa11.52□□□□□ -0.57
TNFRSF11B-202ENST00000517352 SOCS7O14512 581 aa11.52□□□□□ -0.57
TNFRSF11B-202ENST00000517352 STAG3Q9UJ98 1225 aa11.52□□□□□ -0.57
TNFRSF11B-202ENST00000517352 NCOA2Q15596 1464 aa11.51□□□□□ -0.57
TNFRSF11B-202ENST00000517352 PLA2R1Q13018 1463 aa11.51□□□□□ -0.57
TNFRSF11B-202ENST00000517352 IQSEC2Q5JU85 1478 aa11.51□□□□□ -0.57
TNFRSF11B-202ENST00000517352 INO80Q9ULG1 1556 aaPredicted RBP11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 CEP170BQ9Y4F5 1589 aaPredicted RBP11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 MROH2AA6NES4 1674 aa11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 ILDR2Q71H61 639 aa11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 A2ML1A8K2U0 1454 aa11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 CAMSAP2Q08AD1 1489 aa11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 MBD5Q9P267 1494 aa11.5□□□□□ -0.57
TNFRSF11B-202ENST00000517352 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.49□□□□□ -0.57
TNFRSF11B-202ENST00000517352 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.49□□□□□ -0.57
TNFRSF11B-202ENST00000517352 TIAM1Q13009 1591 aa11.49□□□□□ -0.57
TNFRSF11B-202ENST00000517352 EID1Q9Y6B2 187 aa11.48□□□□□ -0.57
TNFRSF11B-202ENST00000517352 FAM135AQ9P2D6 1515 aa11.48□□□□□ -0.57
TNFRSF11B-202ENST00000517352 PLXNC1O60486 1568 aa11.48□□□□□ -0.57
TNFRSF11B-202ENST00000517352 ADGBQ8N7X0 1667 aa11.48□□□□□ -0.57
TNFRSF11B-202ENST00000517352 LTBP4Q8N2S1 1624 aa11.47□□□□□ -0.57
TNFRSF11B-202ENST00000517352 MIA2Q96PC5 1412 aa11.47□□□□□ -0.57
TNFRSF11B-202ENST00000517352 BCANQ96GW7 911 aa11.47□□□□□ -0.57
TNFRSF11B-202ENST00000517352 MYO3AQ8NEV4 1616 aa11.46□□□□□ -0.57
TNFRSF11B-202ENST00000517352 KDM5DQ9BY66 1539 aa11.46□□□□□ -0.57
TNFRSF11B-202ENST00000517352 RRP7BPQ9NSQ0 103 aa11.46□□□□□ -0.57
TNFRSF11B-202ENST00000517352 VPS8Q8N3P4 1428 aa11.45□□□□□ -0.58
TNFRSF11B-202ENST00000517352 SPATA31D1Q6ZQQ2 1576 aa11.45□□□□□ -0.58
TNFRSF11B-202ENST00000517352 PZPP20742 1482 aa11.44□□□□□ -0.58
TNFRSF11B-202ENST00000517352 TCOF1Q13428 1488 aaKnown RBP11.44□□□□□ -0.58
TNFRSF11B-202ENST00000517352 KANK1Q14678 1352 aa11.44□□□□□ -0.58
TNFRSF11B-202ENST00000517352 HSPA1LP34931 641 aa11.44□□□□□ -0.58
TNFRSF11B-202ENST00000517352 KANK4Q5T7N3 995 aaPredicted RBP11.44□□□□□ -0.58
TNFRSF11B-202ENST00000517352 NLRP1Q9C000 1473 aa11.44□□□□□ -0.58
TNFRSF11B-202ENST00000517352 TXNDC2Q86VQ3 553 aa11.43□□□□□ -0.58
TNFRSF11B-202ENST00000517352 LRRC9Q6ZRR7 1453 aa11.43□□□□□ -0.58
TNFRSF11B-202ENST00000517352 NPHP4O75161 1426 aaPredicted RBP11.43□□□□□ -0.58
TNFRSF11B-202ENST00000517352 MYOM3Q5VTT5 1437 aa11.43□□□□□ -0.58
TNFRSF11B-202ENST00000517352 UGGT1Q9NYU2 1555 aa11.42□□□□□ -0.58
TNFRSF11B-202ENST00000517352 SHANK2Q9UPX8 1470 aa11.42□□□□□ -0.58
TNFRSF11B-202ENST00000517352 CPS1P31327 1500 aa11.41□□□□□ -0.58
TNFRSF11B-202ENST00000517352 CHIC2Q9UKJ5 165 aa11.41□□□□□ -0.58
TNFRSF11B-202ENST00000517352 DNMT1P26358 1616 aaKnown RBP11.41□□□□□ -0.58
TNFRSF11B-202ENST00000517352 ZNF142P52746 1687 aaPredicted RBP11.4□□□□□ -0.59
TNFRSF11B-202ENST00000517352 FAM50AQ14320 339 aaKnown RBP11.39□□□□□ -0.59
TNFRSF11B-202ENST00000517352 KIF15Q9NS87 1388 aa11.39□□□□□ -0.59
TNFRSF11B-202ENST00000517352 ARHGEF5Q12774 1597 aa11.38□□□□□ -0.59
TNFRSF11B-202ENST00000517352 PPP1R15AO75807 674 aaPredicted RBP11.36□□□□□ -0.59
TNFRSF11B-202ENST00000517352 HDGFP51858 240 aaKnown RBP11.36□□□□□ -0.59
TNFRSF11B-202ENST00000517352 ANKRD30AQ9BXX3 1397 aa11.36□□□□□ -0.59
TNFRSF11B-202ENST00000517352 CNKSR2Q8WXI2 1034 aa11.35□□□□□ -0.59
TNFRSF11B-202ENST00000517352 DUOX2Q9NRD8 1548 aa11.35□□□□□ -0.59
TNFRSF11B-202ENST00000517352 CHGAP10645 457 aaKnown RBP11.34□□□□□ -0.59
TNFRSF11B-202ENST00000517352 ABCC3O15438 1527 aa11.34□□□□□ -0.59
TNFRSF11B-202ENST00000517352 ERVK-7P63135 1459 aa11.33□□□□□ -0.6
TNFRSF11B-202ENST00000517352 C14orf37Q86TY3 774 aa11.33□□□□□ -0.6
TNFRSF11B-202ENST00000517352 PROSER2Q86WR7 435 aaPredicted RBP11.33□□□□□ -0.6
TNFRSF11B-202ENST00000517352 MAP3K1Q13233 1512 aa11.33□□□□□ -0.6
TNFRSF11B-202ENST00000517352 SCAF11Q99590 1463 aaKnown RBP11.32□□□□□ -0.6
TNFRSF11B-202ENST00000517352 LTKP29376 864 aa11.32□□□□□ -0.6
TNFRSF11B-202ENST00000517352 ERBINQ96RT1 1412 aa11.32□□□□□ -0.6
TNFRSF11B-202ENST00000517352 MED14O60244 1454 aa11.32□□□□□ -0.6
TNFRSF11B-202ENST00000517352 SLC26A8Q96RN1 970 aa11.31□□□□□ -0.6
TNFRSF11B-202ENST00000517352 POLR1AO95602 1720 aaPredicted RBP11.31□□□□□ -0.6
TNFRSF11B-202ENST00000517352 MAST1Q9Y2H9 1570 aa11.3□□□□□ -0.6
TNFRSF11B-202ENST00000517352 ABCC5O15440 1437 aa11.3□□□□□ -0.6
TNFRSF11B-202ENST00000517352 IDI1Q13907 227 aa11.3□□□□□ -0.6
TNFRSF11B-202ENST00000517352 SLC52A1Q9NWF4 448 aa11.3□□□□□ -0.6
TNFRSF11B-202ENST00000517352 ZC3H13Q5T200 1668 aaKnown RBP11.3□□□□□ -0.6
TNFRSF11B-202ENST00000517352 NEURL4Q96JN8 1562 aa11.29□□□□□ -0.6
TNFRSF11B-202ENST00000517352 DAPK1P53355 1430 aa11.29□□□□□ -0.6
TNFRSF11B-202ENST00000517352 TMEM2Q9UHN6 1383 aa11.28□□□□□ -0.6
TNFRSF11B-202ENST00000517352 DEPDC5O75140 1603 aa11.28□□□□□ -0.6
TNFRSF11B-202ENST00000517352 EIF2AK4Q9P2K8 1649 aaKnown RBP11.28□□□□□ -0.6
TNFRSF11B-202ENST00000517352 IQGAP1P46940 1657 aa11.28□□□□□ -0.6
TNFRSF11B-202ENST00000517352 HOXD11P31277 338 aaPredicted RBP11.28□□□□□ -0.6
TNFRSF11B-202ENST00000517352 ITGAEP38570 1179 aa11.28□□□□□ -0.6
TNFRSF11B-202ENST00000517352 RNF17Q9BXT8 1623 aaKnown RBP11.27□□□□□ -0.6
TNFRSF11B-202ENST00000517352 ARHGAP31Q2M1Z3 1444 aa11.27□□□□□ -0.6
TNFRSF11B-202ENST00000517352 FGD6Q6ZV73 1430 aa11.27□□□□□ -0.6
TNFRSF11B-202ENST00000517352 LRRC7Q96NW7 1537 aa11.27□□□□□ -0.61
TNFRSF11B-202ENST00000517352 KCNA6P17658 529 aa11.27□□□□□ -0.61
TNFRSF11B-202ENST00000517352 RBM33Q96EV2 1170 aaKnown RBP11.27□□□□□ -0.61
TNFRSF11B-202ENST00000517352 VWDEQ8N2E2 1590 aa11.27□□□□□ -0.61
TNFRSF11B-202ENST00000517352 PTPN23Q9H3S7 1636 aa11.26□□□□□ -0.61
TNFRSF11B-202ENST00000517352 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.25□□□□□ -0.61
TNFRSF11B-202ENST00000517352 TMEM94Q12767 1356 aa11.25□□□□□ -0.61
TNFRSF11B-202ENST00000517352 MED1Q15648 1581 aaPredicted RBP11.24□□□□□ -0.61
TNFRSF11B-202ENST00000517352 MSH6P52701 1360 aa11.24□□□□□ -0.61
TNFRSF11B-202ENST00000517352 DCAF8L1A6NGE4 600 aa11.23□□□□□ -0.61
TNFRSF11B-202ENST00000517352 MEX3CQ5U5Q3 659 aaKnown RBP11.23□□□□□ -0.61
TNFRSF11B-202ENST00000517352 RNF216Q9NWF9 866 aaPredicted RBP11.23□□□□□ -0.61
TNFRSF11B-202ENST00000517352 EFCAB6Q5THR3 1501 aa11.23□□□□□ -0.61
TNFRSF11B-202ENST00000517352 CEP152O94986 1710 aa11.22□□□□□ -0.61
TNFRSF11B-202ENST00000517352 ATF3P18847 181 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms