RNA–Protein interactions for RNA: ENST00000515035.5

TCOF1-214, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 2

Gene TCOF1, Length 5,240 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-214ENST00000515035 HDGFL2Q7Z4V5 671 aaPredicted RBP16.53■□□□□ 0.24
TCOF1-214ENST00000515035 SOX12O15370 315 aa16.52■□□□□ 0.24
TCOF1-214ENST00000515035 ZNF771Q7L3S4 317 aaPredicted RBP16.52■□□□□ 0.23
TCOF1-214ENST00000515035 EID1Q9Y6B2 187 aa16.52■□□□□ 0.23
TCOF1-214ENST00000515035 FOXD1Q16676 465 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 FOXD4L5Q5VV16 416 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-214ENST00000515035 FOXD4L4Q8WXT5 416 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-214ENST00000515035 CENPJQ9HC77 1338 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-214ENST00000515035 TRIM6-TRIM34B2RNG4 842 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 MPHOSPH9Q99550 1183 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 FAM13BQ9NYF5 915 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 NPHP1O15259 732 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 HSP90B1P14625 803 aaKnown RBP16.51■□□□□ 0.23
TCOF1-214ENST00000515035 CCDC34Q96HJ3 373 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 CENPQQ7L2Z9 268 aaPredicted RBP16.51■□□□□ 0.23
TCOF1-214ENST00000515035 NLRP13Q86W25 1043 aa16.51■□□□□ 0.23
TCOF1-214ENST00000515035 WASHC2CQ9Y4E1 1318 aa16.5■□□□□ 0.23
TCOF1-214ENST00000515035 A0A0U1RQG5 324 aaPredicted RBP16.5■□□□□ 0.23
TCOF1-214ENST00000515035 CYB5RLQ6IPT4 315 aa16.5■□□□□ 0.23
TCOF1-214ENST00000515035 NCAPD3P42695 1498 aa16.48■□□□□ 0.23
TCOF1-214ENST00000515035 HMMRO75330 724 aa16.48■□□□□ 0.23
TCOF1-214ENST00000515035 TPM3P06753 285 aa16.48■□□□□ 0.23
TCOF1-214ENST00000515035 SETQ01105 290 aaPredicted RBP16.47■□□□□ 0.23
TCOF1-214ENST00000515035 EXOC6Q8TAG9 804 aa16.46■□□□□ 0.23
TCOF1-214ENST00000515035 GAPVD1Q14C86 1478 aa16.46■□□□□ 0.23
TCOF1-214ENST00000515035 ROCK2O75116 1388 aaKnown RBP16.46■□□□□ 0.23
TCOF1-214ENST00000515035 ISY1Q9ULR0 285 aaKnown RBP16.45■□□□□ 0.22
TCOF1-214ENST00000515035 NCBP3Q53F19 620 aaKnown RBP16.45■□□□□ 0.22
TCOF1-214ENST00000515035 KIF16BQ96L93 1317 aa16.45■□□□□ 0.22
TCOF1-214ENST00000515035 CCDC146Q8IYE0 955 aa16.44■□□□□ 0.22
TCOF1-214ENST00000515035 EIF3AQ14152 1382 aaKnown RBP16.44■□□□□ 0.22
TCOF1-214ENST00000515035 FAM43AQ8N2R8 423 aa16.44■□□□□ 0.22
TCOF1-214ENST00000515035 DHX57Q6P158 1386 aaKnown RBP16.44■□□□□ 0.22
TCOF1-214ENST00000515035 FGD5Q6ZNL6 1462 aa16.43■□□□□ 0.22
TCOF1-214ENST00000515035 CCAR2Q8N163 923 aaKnown RBP16.43■□□□□ 0.22
TCOF1-214ENST00000515035 RRP1P56182 461 aaKnown RBP16.42■□□□□ 0.22
TCOF1-214ENST00000515035 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.42■□□□□ 0.22
TCOF1-214ENST00000515035 STK31Q9BXU1 1019 aa16.42■□□□□ 0.22
TCOF1-214ENST00000515035 GOLGA6L19H0YKK7 550 aa16.42■□□□□ 0.22
TCOF1-214ENST00000515035 PLIN1O60240 522 aa16.42■□□□□ 0.22
TCOF1-214ENST00000515035 GPATCH3Q96I76 525 aa16.42■□□□□ 0.22
TCOF1-214ENST00000515035 GPS2Q13227 327 aa16.42■□□□□ 0.22
TCOF1-214ENST00000515035 CREBRFQ8IUR6 639 aa16.42■□□□□ 0.22
TCOF1-214ENST00000515035 SF3A1Q15459 793 aaKnown RBP16.41■□□□□ 0.22
TCOF1-214ENST00000515035 PAK3O75914 559 aaPredicted RBP16.41■□□□□ 0.22
TCOF1-214ENST00000515035 BECN2A8MW95 431 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 FOXD4L6Q3SYB3 417 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-214ENST00000515035 FOXD4L3Q6VB84 417 aaPredicted RBP16.4■□□□□ 0.22
TCOF1-214ENST00000515035 ZNF592Q92610 1267 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 ZBED9Q6R2W3 1325 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 ATP6V1DQ9Y5K8 247 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 PHLDB1Q86UU1 1377 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 L3MBTL2Q969R5 705 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 KIF3AQ9Y496 699 aa16.4■□□□□ 0.22
TCOF1-214ENST00000515035 CRBNQ96SW2 442 aa16.39■□□□□ 0.21
TCOF1-214ENST00000515035 CHMP5Q9NZZ3 219 aa16.38■□□□□ 0.21
TCOF1-214ENST00000515035 SLC4A10Q6U841 1118 aa16.38■□□□□ 0.21
TCOF1-214ENST00000515035 RASSF8Q8NHQ8 419 aa16.38■□□□□ 0.21
TCOF1-214ENST00000515035 PDE4CQ08493 712 aa16.37■□□□□ 0.21
TCOF1-214ENST00000515035 CSB-PGBD3P0DP91 1061 aa16.37■□□□□ 0.21
TCOF1-214ENST00000515035 TERF2IPQ9NYB0 399 aa16.36■□□□□ 0.21
TCOF1-214ENST00000515035 NFKBIBQ15653 356 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 MYBBP1AQ9BQG0 1328 aaKnown RBP16.35■□□□□ 0.21
TCOF1-214ENST00000515035 TEX35Q5T0J7 233 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 GORABQ5T7V8 394 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 CHMP4AQ9BY43 222 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 HDAC5Q9UQL6 1122 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 PRKRIP1Q9H875 184 aaPredicted RBP16.35■□□□□ 0.21
TCOF1-214ENST00000515035 IGF1RP08069 1367 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 CGNL1Q0VF96 1302 aa16.35■□□□□ 0.21
TCOF1-214ENST00000515035 ANKRD45Q5TZF3 282 aa16.34■□□□□ 0.21
TCOF1-214ENST00000515035 RAD54L2Q9Y4B4 1467 aa16.34■□□□□ 0.21
TCOF1-214ENST00000515035 KIF15Q9NS87 1388 aa16.33■□□□□ 0.21
TCOF1-214ENST00000515035 H3BQV1 296 aa16.33■□□□□ 0.21
TCOF1-214ENST00000515035 IFFO2Q5TF58 517 aa16.33■□□□□ 0.21
TCOF1-214ENST00000515035 BCL2L13Q9BXK5 485 aa16.33■□□□□ 0.21
TCOF1-214ENST00000515035 COG6Q9Y2V7 657 aa16.32■□□□□ 0.2
TCOF1-214ENST00000515035 PES1O00541 588 aaKnown RBP16.32■□□□□ 0.2
TCOF1-214ENST00000515035 ANO8Q9HCE9 1232 aaPredicted RBP16.31■□□□□ 0.2
TCOF1-214ENST00000515035 UACAQ9BZF9 1416 aa16.31■□□□□ 0.2
TCOF1-214ENST00000515035 TSR1Q2NL82 804 aaKnown RBP16.31■□□□□ 0.2
TCOF1-214ENST00000515035 NGDNQ8NEJ9 315 aaKnown RBP16.31■□□□□ 0.2
TCOF1-214ENST00000515035 PKNOX2Q96KN3 472 aa16.31■□□□□ 0.2
TCOF1-214ENST00000515035 RILPL2Q969X0 211 aa16.3■□□□□ 0.2
TCOF1-214ENST00000515035 MAP7D2Q96T17 732 aa16.3■□□□□ 0.2
TCOF1-214ENST00000515035 RRP7AQ9Y3A4 280 aaKnown RBP16.3■□□□□ 0.2
TCOF1-214ENST00000515035 FAM184AQ8NB25 1140 aa16.3■□□□□ 0.2
TCOF1-214ENST00000515035 ZKSCAN2Q63HK3 967 aa16.3■□□□□ 0.2
TCOF1-214ENST00000515035 CEP89Q96ST8 783 aa16.3■□□□□ 0.2
TCOF1-214ENST00000515035 FAM69CQ0P6D2 419 aa16.29■□□□□ 0.2
TCOF1-214ENST00000515035 CHMP3Q9Y3E7 222 aa16.29■□□□□ 0.2
TCOF1-214ENST00000515035 R3HCC1Q9Y3T6 440 aaKnown RBP16.29■□□□□ 0.2
TCOF1-214ENST00000515035 MRE11P49959 708 aa16.29■□□□□ 0.2
TCOF1-214ENST00000515035 TPD52L1Q16890 204 aaPredicted RBP16.29■□□□□ 0.2
TCOF1-214ENST00000515035 CCDC70Q6NSX1 233 aa16.29■□□□□ 0.2
TCOF1-214ENST00000515035 TPM1P09493 284 aa16.29■□□□□ 0.2
TCOF1-214ENST00000515035 MTERF4Q7Z6M4 381 aaKnown RBP16.29■□□□□ 0.2
TCOF1-214ENST00000515035 RUSC2Q8N2Y8 1516 aa16.28■□□□□ 0.2
TCOF1-214ENST00000515035 E9PSI1 815 aa16.28■□□□□ 0.2
TCOF1-214ENST00000515035 CCDC144AA2RUR9 1427 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms