RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 TSR1Q2NL82 804 aaKnown RBP14.33□□□□□ -0.12
NUP54-215ENST00000514313 PCDHGA4Q9Y5G9 962 aa14.33□□□□□ -0.12
NUP54-215ENST00000514313 SLAIN1Q8ND83 568 aa14.31□□□□□ -0.12
NUP54-215ENST00000514313 ZMYND15Q9H091 742 aa14.31□□□□□ -0.12
NUP54-215ENST00000514313 TYW1BQ6NUM6 668 aa14.3□□□□□ -0.12
NUP54-215ENST00000514313 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.3□□□□□ -0.12
NUP54-215ENST00000514313 JPH4Q96JJ6 628 aa14.27□□□□□ -0.13
NUP54-215ENST00000514313 GOPCQ9HD26 462 aa14.27□□□□□ -0.13
NUP54-215ENST00000514313 PHOX2BQ99453 314 aa14.26□□□□□ -0.13
NUP54-215ENST00000514313 TMUB1Q9BVT8 246 aa14.26□□□□□ -0.13
NUP54-215ENST00000514313 KDM4FA0A1W2PPD8 638 aa14.25□□□□□ -0.13
NUP54-215ENST00000514313 MDM2Q00987 491 aaPredicted RBP14.25□□□□□ -0.13
NUP54-215ENST00000514313 CLCN1P35523 988 aa14.24□□□□□ -0.13
NUP54-215ENST00000514313 FBXW7Q969H0 707 aa14.24□□□□□ -0.13
NUP54-215ENST00000514313 RSPH6AQ9H0K4 717 aa14.24□□□□□ -0.13
NUP54-215ENST00000514313 GPCPD1Q9NPB8 672 aa14.23□□□□□ -0.13
NUP54-215ENST00000514313 FOSBP53539 338 aa14.2□□□□□ -0.14
NUP54-215ENST00000514313 FAM161AQ3B820 660 aa14.2□□□□□ -0.14
NUP54-215ENST00000514313 PCMTD1Q96MG8 357 aaPredicted RBP14.19□□□□□ -0.14
NUP54-215ENST00000514313 PADI6Q6TGC4 694 aa14.18□□□□□ -0.14
NUP54-215ENST00000514313 FLIIQ13045 1269 aa14.17□□□□□ -0.14
NUP54-215ENST00000514313 SH3D19Q5HYK7 790 aa14.17□□□□□ -0.14
NUP54-215ENST00000514313 METTL3Q86U44 580 aaKnown RBP14.17□□□□□ -0.14
NUP54-215ENST00000514313 ONECUT3O60422 494 aaPredicted RBP14.16□□□□□ -0.14
NUP54-215ENST00000514313 SSTR3P32745 418 aaPredicted RBP14.16□□□□□ -0.14
NUP54-215ENST00000514313 NLRP7Q8WX94 980 aa14.16□□□□□ -0.14
NUP54-215ENST00000514313 C6orf132Q5T0Z8 1188 aa14.15□□□□□ -0.14
NUP54-215ENST00000514313 ZNF454Q8N9F8 522 aa14.15□□□□□ -0.14
NUP54-215ENST00000514313 CERKQ8TCT0 537 aa14.14□□□□□ -0.15
NUP54-215ENST00000514313 ZDHHC16Q969W1 377 aa14.14□□□□□ -0.15
NUP54-215ENST00000514313 ADGRG1Q9Y653 693 aa14.13□□□□□ -0.15
NUP54-215ENST00000514313 NUDT7P0C024 238 aa14.12□□□□□ -0.15
NUP54-215ENST00000514313 PXYLP1Q8TE99 480 aa14.12□□□□□ -0.15
NUP54-215ENST00000514313 KHSRPQ92945 711 aaKnown RBP eCLIP14.12□□□□□ -0.15
NUP54-215ENST00000514313 FAM217BQ9NTX9 383 aaPredicted RBP14.12□□□□□ -0.15
NUP54-215ENST00000514313 OATP04181 439 aa14.11□□□□□ -0.15
NUP54-215ENST00000514313 BEGAINQ9BUH8 593 aa14.11□□□□□ -0.15
NUP54-215ENST00000514313 TTC13Q8NBP0 860 aa14.1□□□□□ -0.15
NUP54-215ENST00000514313 ADAM33Q9BZ11 813 aa14.1□□□□□ -0.15
NUP54-215ENST00000514313 RBM27Q9P2N5 1060 aaKnown RBP14.1□□□□□ -0.15
NUP54-215ENST00000514313 ARSIQ5FYB1 569 aa14.08□□□□□ -0.16
NUP54-215ENST00000514313 HOXB3P14651 431 aaPredicted RBP14.07□□□□□ -0.16
NUP54-215ENST00000514313 SKIV2LQ15477 1246 aaKnown RBP14.07□□□□□ -0.16
NUP54-215ENST00000514313 DOK7Q18PE1 504 aa14.07□□□□□ -0.16
NUP54-215ENST00000514313 C1orf115Q9H7X2 142 aa14.06□□□□□ -0.16
NUP54-215ENST00000514313 POTEJP0CG39 1038 aa14.04□□□□□ -0.16
NUP54-215ENST00000514313 PRSS12P56730 875 aa14.03□□□□□ -0.16
NUP54-215ENST00000514313 MCM6Q14566 821 aa14.03□□□□□ -0.16
NUP54-215ENST00000514313 PROCA1Q8NCQ7 364 aaPredicted RBP14.02□□□□□ -0.17
NUP54-215ENST00000514313 CDCA7LQ96GN5 454 aa14.02□□□□□ -0.17
NUP54-215ENST00000514313 UBTFP17480 764 aaKnown RBP14.01□□□□□ -0.17
NUP54-215ENST00000514313 GPR153Q6NV75 609 aa14.01□□□□□ -0.17
NUP54-215ENST00000514313 CLUAP1Q96AJ1 413 aa14.01□□□□□ -0.17
NUP54-215ENST00000514313 POLR3EQ9NVU0 708 aa14.01□□□□□ -0.17
NUP54-215ENST00000514313 ARID3CA6NKF2 412 aa14□□□□□ -0.17
NUP54-215ENST00000514313 RIMBP2O15034 1052 aa14□□□□□ -0.17
NUP54-215ENST00000514313 MYSM1Q5VVJ2 828 aa14□□□□□ -0.17
NUP54-215ENST00000514313 ZSWIM6Q9HCJ5 1215 aa14□□□□□ -0.17
NUP54-215ENST00000514313 RBM46Q8TBY0 533 aaKnown RBP13.99□□□□□ -0.17
NUP54-215ENST00000514313 ARID3AQ99856 593 aa13.99□□□□□ -0.17
NUP54-215ENST00000514313 FAM198AQ9UFP1 575 aa13.99□□□□□ -0.17
NUP54-215ENST00000514313 ATP1B4Q9UN42 357 aaPredicted RBP13.98□□□□□ -0.17
NUP54-215ENST00000514313 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.97□□□□□ -0.17
NUP54-215ENST00000514313 LHX6Q9UPM6 363 aa13.97□□□□□ -0.17
NUP54-215ENST00000514313 A6NJR5 290 aa13.96□□□□□ -0.17
NUP54-215ENST00000514313 COL9A1P20849 921 aa13.96□□□□□ -0.17
NUP54-215ENST00000514313 APBB1O00213 710 aa13.95□□□□□ -0.18
NUP54-215ENST00000514313 CLK2P49760 499 aaKnown RBP13.95□□□□□ -0.18
NUP54-215ENST00000514313 POTEB2H3BUK9 544 aa13.94□□□□□ -0.18
NUP54-215ENST00000514313 TBC1D2Q9BYX2 928 aa13.94□□□□□ -0.18
NUP54-215ENST00000514313 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.93□□□□□ -0.18
NUP54-215ENST00000514313 PPP4R3BQ5MIZ7 849 aa13.93□□□□□ -0.18
NUP54-215ENST00000514313 ZNF710Q8N1W2 664 aa13.93□□□□□ -0.18
NUP54-215ENST00000514313 BCL2L12Q9HB09 334 aa13.92□□□□□ -0.18
NUP54-215ENST00000514313 RCCD1A6NED2 376 aa13.91□□□□□ -0.18
NUP54-215ENST00000514313 EYA1Q99502 592 aa13.91□□□□□ -0.18
NUP54-215ENST00000514313 TSKSQ9UJT2 592 aa13.91□□□□□ -0.18
NUP54-215ENST00000514313 TRAK2O60296 914 aa13.9□□□□□ -0.18
NUP54-215ENST00000514313 PPP1R3GB7ZBB8 358 aa13.89□□□□□ -0.19
NUP54-215ENST00000514313 C3orf80F5H4A9 247 aa13.89□□□□□ -0.19
NUP54-215ENST00000514313 DIXDC1Q155Q3 683 aa13.88□□□□□ -0.19
NUP54-215ENST00000514313 LIMD1Q9UGP4 676 aa13.88□□□□□ -0.19
NUP54-215ENST00000514313 PSDA5PKW4 1024 aaPredicted RBP13.87□□□□□ -0.19
NUP54-215ENST00000514313 FBXO31Q5XUX0 539 aaPredicted RBP13.87□□□□□ -0.19
NUP54-215ENST00000514313 SCUBE2Q9NQ36 999 aa13.87□□□□□ -0.19
NUP54-215ENST00000514313 CD46P15529 392 aa13.86□□□□□ -0.19
NUP54-215ENST00000514313 PTPREP23469 700 aa13.86□□□□□ -0.19
NUP54-215ENST00000514313 NUDT18Q6ZVK8 323 aa13.86□□□□□ -0.19
NUP54-215ENST00000514313 SPIRE2Q8WWL2 714 aa13.86□□□□□ -0.19
NUP54-215ENST00000514313 POM121Q96HA1 1249 aa13.86□□□□□ -0.19
NUP54-215ENST00000514313 RFC5P40937 340 aa13.85□□□□□ -0.19
NUP54-215ENST00000514313 PROSER2Q86WR7 435 aaPredicted RBP13.85□□□□□ -0.19
NUP54-215ENST00000514313 SPDYE5A6NIY4 337 aa13.83□□□□□ -0.2
NUP54-215ENST00000514313 NBPF26B4DH59 902 aa13.83□□□□□ -0.2
NUP54-215ENST00000514313 DNAJB2P25686 324 aa13.83□□□□□ -0.2
NUP54-215ENST00000514313 PNMA3Q9UL41 463 aa13.83□□□□□ -0.2
NUP54-215ENST00000514313 TRIM6-TRIM34B2RNG4 842 aa13.82□□□□□ -0.2
NUP54-215ENST00000514313 RIC3Q7Z5B4 369 aa13.82□□□□□ -0.2
NUP54-215ENST00000514313 CCDC82Q8N4S0 544 aa13.82□□□□□ -0.2
NUP54-215ENST00000514313 DDX11L8A8MPP1 907 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms