RNA–Protein interactions for RNA: ENST00000513143.5

PDPN-210, Transcript of podoplanin, humanhuman

TSL 1 (best) BASIC

Gene PDPN, Length 1,305 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-210ENST00000513143 RAB3GAP2Q9H2M9 1393 aa18.73■□□□□ 0.59
PDPN-210ENST00000513143 REREQ9P2R6 1566 aa18.73■□□□□ 0.59
PDPN-210ENST00000513143 HRCP23327 699 aa18.73■□□□□ 0.59
PDPN-210ENST00000513143 EIF2AK4Q9P2K8 1649 aaKnown RBP18.71■□□□□ 0.59
PDPN-210ENST00000513143 BCORL1Q5H9F3 1711 aa18.69■□□□□ 0.58
PDPN-210ENST00000513143 ACIN1Q9UKV3 1341 aaKnown RBP18.67■□□□□ 0.58
PDPN-210ENST00000513143 AGLP35573 1532 aa18.66■□□□□ 0.58
PDPN-210ENST00000513143 SIGLEC1Q9BZZ2 1709 aa18.66■□□□□ 0.58
PDPN-210ENST00000513143 DEPDC5O75140 1603 aa18.64■□□□□ 0.57
PDPN-210ENST00000513143 UNC13BO14795 1591 aa18.64■□□□□ 0.57
PDPN-210ENST00000513143 KIF3BO15066 747 aa18.64■□□□□ 0.57
PDPN-210ENST00000513143 RNF17Q9BXT8 1623 aaKnown RBP18.63■□□□□ 0.57
PDPN-210ENST00000513143 MROH1Q8NDA8 1641 aa18.6■□□□□ 0.57
PDPN-210ENST00000513143 PRDM15P57071 1507 aaPredicted RBP18.59■□□□□ 0.57
PDPN-210ENST00000513143 KDM5DQ9BY66 1539 aa18.59■□□□□ 0.57
PDPN-210ENST00000513143 TRIM52Q96A61 297 aa18.59■□□□□ 0.57
PDPN-210ENST00000513143 NUP155O75694 1391 aa18.57■□□□□ 0.56
PDPN-210ENST00000513143 IQGAP3Q86VI3 1631 aa18.57■□□□□ 0.56
PDPN-210ENST00000513143 VWDEQ8N2E2 1590 aa18.56■□□□□ 0.56
PDPN-210ENST00000513143 GGT6Q6P531 493 aa18.56■□□□□ 0.56
PDPN-210ENST00000513143 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.55■□□□□ 0.56
PDPN-210ENST00000513143 PZPP20742 1482 aa18.54■□□□□ 0.56
PDPN-210ENST00000513143 ARID4BQ4LE39 1312 aaPredicted RBP18.54■□□□□ 0.56
PDPN-210ENST00000513143 FAM135AQ9P2D6 1515 aa18.54■□□□□ 0.56
PDPN-210ENST00000513143 KANK1Q14678 1352 aa18.53■□□□□ 0.56
PDPN-210ENST00000513143 DHX57Q6P158 1386 aaKnown RBP18.51■□□□□ 0.55
PDPN-210ENST00000513143 MPHOSPH9Q99550 1183 aa18.51■□□□□ 0.55
PDPN-210ENST00000513143 CEP152O94986 1710 aa18.51■□□□□ 0.55
PDPN-210ENST00000513143 SLC4A1APQ9BWU0 796 aaKnown RBP18.5■□□□□ 0.55
PDPN-210ENST00000513143 LMTK2Q8IWU2 1503 aa18.5■□□□□ 0.55
PDPN-210ENST00000513143 ZC3H13Q5T200 1668 aaKnown RBP18.5■□□□□ 0.55
PDPN-210ENST00000513143 MLECQ14165 292 aa18.49■□□□□ 0.55
PDPN-210ENST00000513143 ABCC3O15438 1527 aa18.49■□□□□ 0.55
PDPN-210ENST00000513143 TET3O43151 1660 aa18.49■□□□□ 0.55
PDPN-210ENST00000513143 WASHC2CQ9Y4E1 1318 aa18.48■□□□□ 0.55
PDPN-210ENST00000513143 CAMSAP1Q5T5Y3 1602 aa18.44■□□□□ 0.54
PDPN-210ENST00000513143 E9PCH4 1651 aa18.44■□□□□ 0.54
PDPN-210ENST00000513143 CLTCQ00610 1675 aaKnown RBP18.44■□□□□ 0.54
PDPN-210ENST00000513143 EFCAB6Q5THR3 1501 aa18.44■□□□□ 0.54
PDPN-210ENST00000513143 MAPK8IP2Q13387 824 aaPredicted RBP18.44■□□□□ 0.54
PDPN-210ENST00000513143 PKD2Q13563 968 aa18.44■□□□□ 0.54
PDPN-210ENST00000513143 FER1L4A9Z1Z3 1794 aa18.43■□□□□ 0.54
PDPN-210ENST00000513143 ADAMTSL3P82987 1691 aa18.42■□□□□ 0.54
PDPN-210ENST00000513143 CNTLNQ9NXG0 1405 aa18.42■□□□□ 0.54
PDPN-210ENST00000513143 MROH2AA6NES4 1674 aa18.41■□□□□ 0.54
PDPN-210ENST00000513143 CCER1Q8TC90 406 aaPredicted RBP18.41■□□□□ 0.54
PDPN-210ENST00000513143 ARHGAP31Q2M1Z3 1444 aa18.41■□□□□ 0.54
PDPN-210ENST00000513143 RPRD2Q5VT52 1461 aaKnown RBP18.4■□□□□ 0.54
PDPN-210ENST00000513143 ESF1Q9H501 851 aaKnown RBP18.4■□□□□ 0.54
PDPN-210ENST00000513143 NPATQ14207 1427 aa18.39■□□□□ 0.53
PDPN-210ENST00000513143 CFAP65Q6ZU64 1925 aaKnown RBP18.39■□□□□ 0.53
PDPN-210ENST00000513143 CLSPNQ9HAW4 1339 aa18.38■□□□□ 0.53
PDPN-210ENST00000513143 MADDQ8WXG6 1647 aa18.38■□□□□ 0.53
PDPN-210ENST00000513143 ZMYM3Q14202 1370 aa18.36■□□□□ 0.53
PDPN-210ENST00000513143 ANKRD30BQ9BXX2 1392 aa18.36■□□□□ 0.53
PDPN-210ENST00000513143 SPHKAPQ2M3C7 1700 aa18.36■□□□□ 0.53
PDPN-210ENST00000513143 PTPRTO14522 1441 aa18.35■□□□□ 0.53
PDPN-210ENST00000513143 RIMS1Q86UR5 1692 aaKnown RBP18.34■□□□□ 0.53
PDPN-210ENST00000513143 C3P01024 1663 aa18.33■□□□□ 0.53
PDPN-210ENST00000513143 PLA2R1Q13018 1463 aa18.33■□□□□ 0.53
PDPN-210ENST00000513143 PREX1Q8TCU6 1659 aa18.33■□□□□ 0.52
PDPN-210ENST00000513143 NOS1P29475 1434 aa18.32■□□□□ 0.52
PDPN-210ENST00000513143 TRPM2O94759 1503 aa18.31■□□□□ 0.52
PDPN-210ENST00000513143 ERVK-7P63135 1459 aa18.3■□□□□ 0.52
PDPN-210ENST00000513143 DMRT2Q9Y5R5 561 aa18.29■□□□□ 0.52
PDPN-210ENST00000513143 SPATA31D1Q6ZQQ2 1576 aa18.29■□□□□ 0.52
PDPN-210ENST00000513143 FBXO31Q5XUX0 539 aaPredicted RBP18.28■□□□□ 0.52
PDPN-210ENST00000513143 SYNMO15061 1565 aa18.27■□□□□ 0.52
PDPN-210ENST00000513143 CEBPAP49715 358 aaPredicted RBP18.26■□□□□ 0.51
PDPN-210ENST00000513143 SIN3AQ96ST3 1273 aa18.26■□□□□ 0.51
PDPN-210ENST00000513143 CCDC144AA2RUR9 1427 aa18.25■□□□□ 0.51
PDPN-210ENST00000513143 PIK3C2BO00750 1634 aa18.25■□□□□ 0.51
PDPN-210ENST00000513143 CLTCL1P53675 1640 aa18.25■□□□□ 0.51
PDPN-210ENST00000513143 PTPRMP28827 1452 aa18.24■□□□□ 0.51
PDPN-210ENST00000513143 KDM4FA0A1W2PPD8 638 aa18.23■□□□□ 0.51
PDPN-210ENST00000513143 UGGT1Q9NYU2 1555 aa18.23■□□□□ 0.51
PDPN-210ENST00000513143 SLC52A1Q9NWF4 448 aa18.23■□□□□ 0.51
PDPN-210ENST00000513143 TNRQ92752 1358 aa18.22■□□□□ 0.51
PDPN-210ENST00000513143 NEUROD1Q13562 356 aa18.22■□□□□ 0.51
PDPN-210ENST00000513143 SETD1BQ9UPS6 1966 aaKnown RBP18.21■□□□□ 0.51
PDPN-210ENST00000513143 KIF1BO60333 1816 aa18.21■□□□□ 0.51
PDPN-210ENST00000513143 IDI1Q13907 227 aa18.19■□□□□ 0.5
PDPN-210ENST00000513143 NEURL4Q96JN8 1562 aa18.18■□□□□ 0.5
PDPN-210ENST00000513143 SCAF1Q9H7N4 1312 aaKnown RBP18.18■□□□□ 0.5
PDPN-210ENST00000513143 NLRP1Q9C000 1473 aa18.17■□□□□ 0.5
PDPN-210ENST00000513143 SPATA31E1Q6ZUB1 1445 aa18.16■□□□□ 0.5
PDPN-210ENST00000513143 TIMELESSQ9UNS1 1208 aa18.15■□□□□ 0.5
PDPN-210ENST00000513143 TMEM131LA2VDJ0 1609 aa18.14■□□□□ 0.49
PDPN-210ENST00000513143 MYO3AQ8NEV4 1616 aa18.14■□□□□ 0.49
PDPN-210ENST00000513143 ADGRB3O60242 1522 aa18.14■□□□□ 0.49
PDPN-210ENST00000513143 MYO5BQ9ULV0 1848 aa18.14■□□□□ 0.49
PDPN-210ENST00000513143 KDM5AP29375 1690 aaKnown RBP18.14■□□□□ 0.49
PDPN-210ENST00000513143 TONSLQ96HA7 1378 aa18.12■□□□□ 0.49
PDPN-210ENST00000513143 CHGAP10645 457 aaKnown RBP18.11■□□□□ 0.49
PDPN-210ENST00000513143 UBR1Q8IWV7 1749 aa18.11■□□□□ 0.49
PDPN-210ENST00000513143 ZEB1P37275 1124 aaPredicted RBP18.1■□□□□ 0.49
PDPN-210ENST00000513143 RGL3Q3MIN7 710 aa18.1■□□□□ 0.49
PDPN-210ENST00000513143 ZNF142P52746 1687 aaPredicted RBP18.1■□□□□ 0.49
PDPN-210ENST00000513143 A2ML1A8K2U0 1454 aa18.09■□□□□ 0.49
PDPN-210ENST00000513143 L3MBTL2Q969R5 705 aa18.09■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms