RNA–Protein interactions for RNA: ENST00000512665.5

NEDD9-213, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 761 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-213ENST00000512665 FAM135BQ49AJ0 1406 aa16.65■□□□□ 0.26
NEDD9-213ENST00000512665 PZPP20742 1482 aa16.65■□□□□ 0.26
NEDD9-213ENST00000512665 SYCP2Q9BX26 1530 aa16.65■□□□□ 0.26
NEDD9-213ENST00000512665 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.64■□□□□ 0.26
NEDD9-213ENST00000512665 THEMISQ8N1K5 641 aaPredicted RBP16.64■□□□□ 0.25
NEDD9-213ENST00000512665 ADGBQ8N7X0 1667 aa16.62■□□□□ 0.25
NEDD9-213ENST00000512665 KIAA1107Q9UPP5 1409 aa16.62■□□□□ 0.25
NEDD9-213ENST00000512665 GGT6Q6P531 493 aa16.62■□□□□ 0.25
NEDD9-213ENST00000512665 SENP3Q9H4L4 574 aaPredicted RBP16.62■□□□□ 0.25
NEDD9-213ENST00000512665 UGGT1Q9NYU2 1555 aa16.62■□□□□ 0.25
NEDD9-213ENST00000512665 LRRIQ1Q96JM4 1722 aa16.62■□□□□ 0.25
NEDD9-213ENST00000512665 UPF1Q92900 1129 aaKnown RBP eCLIP16.61■□□□□ 0.25
NEDD9-213ENST00000512665 PLEKHH2Q8IVE3 1493 aa16.6■□□□□ 0.25
NEDD9-213ENST00000512665 ATP1B4Q9UN42 357 aaPredicted RBP16.58■□□□□ 0.24
NEDD9-213ENST00000512665 KDM5DQ9BY66 1539 aa16.58■□□□□ 0.24
NEDD9-213ENST00000512665 ZC3H13Q5T200 1668 aaKnown RBP16.58■□□□□ 0.24
NEDD9-213ENST00000512665 MIA2Q96PC5 1412 aa16.57■□□□□ 0.24
NEDD9-213ENST00000512665 CCDC18Q5T9S5 1454 aa16.56■□□□□ 0.24
NEDD9-213ENST00000512665 ARHGAP35Q9NRY4 1499 aa16.56■□□□□ 0.24
NEDD9-213ENST00000512665 XIRP1Q702N8 1843 aaKnown RBP16.56■□□□□ 0.24
NEDD9-213ENST00000512665 FBXO31Q5XUX0 539 aaPredicted RBP16.54■□□□□ 0.24
NEDD9-213ENST00000512665 GPATCH8Q9UKJ3 1502 aaKnown RBP16.53■□□□□ 0.24
NEDD9-213ENST00000512665 ROBO1Q9Y6N7 1651 aa16.51■□□□□ 0.23
NEDD9-213ENST00000512665 LRRC9Q6ZRR7 1453 aa16.51■□□□□ 0.23
NEDD9-213ENST00000512665 HNRNPMP52272 730 aaKnown RBP eCLIP16.5■□□□□ 0.23
NEDD9-213ENST00000512665 RTEL1-TNFRSF6BF6WH68 1400 aa16.5■□□□□ 0.23
NEDD9-213ENST00000512665 DHX29Q7Z478 1369 aaKnown RBP16.49■□□□□ 0.23
NEDD9-213ENST00000512665 CDK12Q9NYV4 1490 aaPredicted RBP16.48■□□□□ 0.23
NEDD9-213ENST00000512665 ZNF777Q9ULD5 760 aaPredicted RBP16.47■□□□□ 0.23
NEDD9-213ENST00000512665 JCADQ9P266 1359 aa16.47■□□□□ 0.23
NEDD9-213ENST00000512665 SCAF11Q99590 1463 aaKnown RBP16.47■□□□□ 0.23
NEDD9-213ENST00000512665 CASKIN1Q8WXD9 1431 aa16.45■□□□□ 0.22
NEDD9-213ENST00000512665 ZNF772Q68DY9 489 aaPredicted RBP16.44■□□□□ 0.22
NEDD9-213ENST00000512665 ARHGAP23Q9P227 1491 aa16.43■□□□□ 0.22
NEDD9-213ENST00000512665 SLIT1O75093 1534 aa16.43■□□□□ 0.22
NEDD9-213ENST00000512665 WASHC2CQ9Y4E1 1318 aa16.43■□□□□ 0.22
NEDD9-213ENST00000512665 MAP3K1Q13233 1512 aa16.42■□□□□ 0.22
NEDD9-213ENST00000512665 UBR1Q8IWV7 1749 aa16.41■□□□□ 0.22
NEDD9-213ENST00000512665 MBD5Q9P267 1494 aa16.41■□□□□ 0.22
NEDD9-213ENST00000512665 PHLPP1O60346 1717 aa16.4■□□□□ 0.22
NEDD9-213ENST00000512665 FGD6Q6ZV73 1430 aa16.4■□□□□ 0.22
NEDD9-213ENST00000512665 CFDP1Q9UEE9 299 aaPredicted RBP16.4■□□□□ 0.22
NEDD9-213ENST00000512665 SPATA31A6Q5VVP1 1343 aa16.4■□□□□ 0.22
NEDD9-213ENST00000512665 TMEM94Q12767 1356 aa16.39■□□□□ 0.21
NEDD9-213ENST00000512665 LRP6O75581 1613 aa16.39■□□□□ 0.21
NEDD9-213ENST00000512665 KIF3BO15066 747 aa16.39■□□□□ 0.21
NEDD9-213ENST00000512665 COL16A1Q07092 1604 aaPredicted RBP16.38■□□□□ 0.21
NEDD9-213ENST00000512665 ERVK-7P63135 1459 aa16.37■□□□□ 0.21
NEDD9-213ENST00000512665 TRIM52Q96A61 297 aa16.37■□□□□ 0.21
NEDD9-213ENST00000512665 NCOA2Q15596 1464 aa16.36■□□□□ 0.21
NEDD9-213ENST00000512665 FYCO1Q9BQS8 1478 aa16.36■□□□□ 0.21
NEDD9-213ENST00000512665 TIAM1Q13009 1591 aa16.35■□□□□ 0.21
NEDD9-213ENST00000512665 RXRBP28702 533 aa16.35■□□□□ 0.21
NEDD9-213ENST00000512665 CCNB3Q8WWL7 1395 aa16.35■□□□□ 0.21
NEDD9-213ENST00000512665 NKTRP30414 1462 aaKnown RBP16.35■□□□□ 0.21
NEDD9-213ENST00000512665 CAMSAP2Q08AD1 1489 aa16.35■□□□□ 0.21
NEDD9-213ENST00000512665 ABCC3O15438 1527 aa16.35■□□□□ 0.21
NEDD9-213ENST00000512665 PRDM15P57071 1507 aaPredicted RBP16.35■□□□□ 0.21
NEDD9-213ENST00000512665 LTKP29376 864 aa16.33■□□□□ 0.2
NEDD9-213ENST00000512665 NWD1Q149M9 1564 aa16.32■□□□□ 0.2
NEDD9-213ENST00000512665 SHPRHQ149N8 1683 aa16.32■□□□□ 0.2
NEDD9-213ENST00000512665 KCNA6P17658 529 aa16.3■□□□□ 0.2
NEDD9-213ENST00000512665 TXNDC2Q86VQ3 553 aa16.3■□□□□ 0.2
NEDD9-213ENST00000512665 MSH6P52701 1360 aa16.29■□□□□ 0.2
NEDD9-213ENST00000512665 UBTFP17480 764 aaKnown RBP16.29■□□□□ 0.2
NEDD9-213ENST00000512665 FOXD1Q16676 465 aa16.29■□□□□ 0.2
NEDD9-213ENST00000512665 MEX3CQ5U5Q3 659 aaKnown RBP16.29■□□□□ 0.2
NEDD9-213ENST00000512665 SLAIN2Q9P270 581 aa16.29■□□□□ 0.2
NEDD9-213ENST00000512665 CCDC141Q6ZP82 1450 aa16.29■□□□□ 0.2
NEDD9-213ENST00000512665 EID1Q9Y6B2 187 aa16.28■□□□□ 0.2
NEDD9-213ENST00000512665 AHDC1Q5TGY3 1603 aaPredicted RBP16.27■□□□□ 0.2
NEDD9-213ENST00000512665 KDM5AP29375 1690 aaKnown RBP16.27■□□□□ 0.19
NEDD9-213ENST00000512665 TET3O43151 1660 aa16.26■□□□□ 0.19
NEDD9-213ENST00000512665 RGS12O14924 1447 aa16.26■□□□□ 0.19
NEDD9-213ENST00000512665 TMEM2Q9UHN6 1383 aa16.26■□□□□ 0.19
NEDD9-213ENST00000512665 ZNF644Q9H582 1327 aaPredicted RBP16.25■□□□□ 0.19
NEDD9-213ENST00000512665 PROSER2Q86WR7 435 aaPredicted RBP16.25■□□□□ 0.19
NEDD9-213ENST00000512665 EIF2AK4Q9P2K8 1649 aaKnown RBP16.24■□□□□ 0.19
NEDD9-213ENST00000512665 RSPH4AQ5TD94 716 aa16.24■□□□□ 0.19
NEDD9-213ENST00000512665 ZRANB1Q9UGI0 708 aa16.23■□□□□ 0.19
NEDD9-213ENST00000512665 ARHGAP31Q2M1Z3 1444 aa16.22■□□□□ 0.19
NEDD9-213ENST00000512665 MROH1Q8NDA8 1641 aa16.22■□□□□ 0.19
NEDD9-213ENST00000512665 SETBP1Q9Y6X0 1596 aa16.21■□□□□ 0.19
NEDD9-213ENST00000512665 NCOA3Q9Y6Q9 1424 aa16.21■□□□□ 0.19
NEDD9-213ENST00000512665 DIP2AQ14689 1571 aa16.21■□□□□ 0.18
NEDD9-213ENST00000512665 ATAD2Q6PL18 1390 aa16.2■□□□□ 0.18
NEDD9-213ENST00000512665 PIK3C2BO00750 1634 aa16.19■□□□□ 0.18
NEDD9-213ENST00000512665 ARHGEF5Q12774 1597 aa16.18■□□□□ 0.18
NEDD9-213ENST00000512665 MTUS2Q5JR59 1369 aa16.18■□□□□ 0.18
NEDD9-213ENST00000512665 AFF2P51816 1311 aa16.18■□□□□ 0.18
NEDD9-213ENST00000512665 RBM6P78332 1123 aaKnown RBP16.17■□□□□ 0.18
NEDD9-213ENST00000512665 EFCAB6Q5THR3 1501 aa16.17■□□□□ 0.18
NEDD9-213ENST00000512665 CEP152O94986 1710 aa16.16■□□□□ 0.18
NEDD9-213ENST00000512665 RBM33Q96EV2 1170 aaKnown RBP16.16■□□□□ 0.18
NEDD9-213ENST00000512665 EP400Q96L91 3159 aa16.16■□□□□ 0.18
NEDD9-213ENST00000512665 CEP162Q5TB80 1403 aa16.16■□□□□ 0.18
NEDD9-213ENST00000512665 EHBP1L1Q8N3D4 1523 aa16.15■□□□□ 0.18
NEDD9-213ENST00000512665 LRP5O75197 1615 aa16.14■□□□□ 0.17
NEDD9-213ENST00000512665 MAST1Q9Y2H9 1570 aa16.13■□□□□ 0.17
NEDD9-213ENST00000512665 NUTM2BA6NNL0 878 aaPredicted RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms