RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	ERBIN	Q96RT1	1412 aa		11.26	□□□□□ -0.61
NR1I3-231	ENST00000512340	CROCC2	H7BZ55	1655 aa		11.25	□□□□□ -0.61
NR1I3-231	ENST00000512340	PREX1	Q8TCU6	1659 aa		11.25	□□□□□ -0.61
NR1I3-231	ENST00000512340	ROCK1	Q13464	1354 aa		11.25	□□□□□ -0.61
NR1I3-231	ENST00000512340	RRBP1	Q9P2E9	1410 aa	Known RBP	11.25	□□□□□ -0.61
NR1I3-231	ENST00000512340	FAM135A	Q9P2D6	1515 aa		11.25	□□□□□ -0.61
NR1I3-231	ENST00000512340	HSPA2	P54652	639 aa		11.24	□□□□□ -0.61
NR1I3-231	ENST00000512340	PLPPR3	Q6T4P5	718 aa		11.24	□□□□□ -0.61
NR1I3-231	ENST00000512340	SETD1B	Q9UPS6	1966 aa	Known RBP	11.24	□□□□□ -0.61
NR1I3-231	ENST00000512340	NCOA1	Q15788	1441 aa		11.24	□□□□□ -0.61
NR1I3-231	ENST00000512340	SOCS7	O14512	581 aa		11.23	□□□□□ -0.61
NR1I3-231	ENST00000512340	ACIN1	Q9UKV3	1341 aa	Known RBP	11.23	□□□□□ -0.61
NR1I3-231	ENST00000512340	ADGRL2	O95490	1459 aa		11.23	□□□□□ -0.61
NR1I3-231	ENST00000512340	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.23	□□□□□ -0.61
NR1I3-231	ENST00000512340	ANKRD50	Q9ULJ7	1429 aa		11.21	□□□□□ -0.61
NR1I3-231	ENST00000512340	IQSEC2	Q5JU85	1478 aa		11.2	□□□□□ -0.62
NR1I3-231	ENST00000512340	UHRF1BP1	Q6BDS2	1440 aa		11.2	□□□□□ -0.62
NR1I3-231	ENST00000512340	ZMYM3	Q14202	1370 aa		11.2	□□□□□ -0.62
NR1I3-231	ENST00000512340	DISP3	Q9P2K9	1392 aa		11.2	□□□□□ -0.62
NR1I3-231	ENST00000512340	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.2	□□□□□ -0.62
NR1I3-231	ENST00000512340	KDM5D	Q9BY66	1539 aa		11.19	□□□□□ -0.62
NR1I3-231	ENST00000512340	PTPRT	O14522	1441 aa		11.18	□□□□□ -0.62
NR1I3-231	ENST00000512340	SIGLEC1	Q9BZZ2	1709 aa		11.18	□□□□□ -0.62
NR1I3-231	ENST00000512340	MROH2A	A6NES4	1674 aa		11.18	□□□□□ -0.62
NR1I3-231	ENST00000512340	NPAT	Q14207	1427 aa		11.18	□□□□□ -0.62
NR1I3-231	ENST00000512340	CEBPA	P49715	358 aa	Predicted RBP	11.17	□□□□□ -0.62
NR1I3-231	ENST00000512340	RNF17	Q9BXT8	1623 aa	Known RBP	11.17	□□□□□ -0.62
NR1I3-231	ENST00000512340	MYT1	Q01538	1121 aa		11.16	□□□□□ -0.62
NR1I3-231	ENST00000512340	ZC3H13	Q5T200	1668 aa	Known RBP	11.16	□□□□□ -0.62
NR1I3-231	ENST00000512340	CLTC	Q00610	1675 aa	Known RBP	11.15	□□□□□ -0.62
NR1I3-231	ENST00000512340	STRC	Q7RTU9	1775 aa		11.14	□□□□□ -0.63
NR1I3-231	ENST00000512340	PTPRK	Q15262	1439 aa		11.14	□□□□□ -0.63
NR1I3-231	ENST00000512340	SPATA31D1	Q6ZQQ2	1576 aa		11.14	□□□□□ -0.63
NR1I3-231	ENST00000512340	PELP1	Q8IZL8	1130 aa	Known RBP	11.13	□□□□□ -0.63
NR1I3-231	ENST00000512340	PRDM15	P57071	1507 aa	Predicted RBP	11.13	□□□□□ -0.63
NR1I3-231	ENST00000512340	PZP	P20742	1482 aa		11.12	□□□□□ -0.63
NR1I3-231	ENST00000512340	C3	P01024	1663 aa		11.12	□□□□□ -0.63
NR1I3-231	ENST00000512340	TRIM52	Q96A61	297 aa		11.12	□□□□□ -0.63
NR1I3-231	ENST00000512340	ABCC3	O15438	1527 aa		11.12	□□□□□ -0.63
NR1I3-231	ENST00000512340	NUP155	O75694	1391 aa		11.12	□□□□□ -0.63
NR1I3-231	ENST00000512340	TNR	Q92752	1358 aa		11.12	□□□□□ -0.63
NR1I3-231	ENST00000512340	HFM1	A2PYH4	1435 aa		11.11	□□□□□ -0.63
NR1I3-231	ENST00000512340	ARHGAP31	Q2M1Z3	1444 aa		11.11	□□□□□ -0.63
NR1I3-231	ENST00000512340	DEPDC5	O75140	1603 aa		11.1	□□□□□ -0.63
NR1I3-231	ENST00000512340	STAG3	Q9UJ98	1225 aa		11.1	□□□□□ -0.63
NR1I3-231	ENST00000512340	ILDR2	Q71H61	639 aa		11.09	□□□□□ -0.63
NR1I3-231	ENST00000512340	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.09	□□□□□ -0.63
NR1I3-231	ENST00000512340	LMTK2	Q8IWU2	1503 aa		11.09	□□□□□ -0.63
NR1I3-231	ENST00000512340	NAIP	Q13075	1403 aa		11.09	□□□□□ -0.63
NR1I3-231	ENST00000512340	RPRD2	Q5VT52	1461 aa	Known RBP	11.08	□□□□□ -0.64
NR1I3-231	ENST00000512340	NLRP1	Q9C000	1473 aa		11.08	□□□□□ -0.64
NR1I3-231	ENST00000512340	CAMSAP1	Q5T5Y3	1602 aa		11.07	□□□□□ -0.64
NR1I3-231	ENST00000512340	MROH1	Q8NDA8	1641 aa		11.07	□□□□□ -0.64
NR1I3-231	ENST00000512340	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.07	□□□□□ -0.64
NR1I3-231	ENST00000512340	SLC52A1	Q9NWF4	448 aa		11.07	□□□□□ -0.64
NR1I3-231	ENST00000512340	GCC2	Q8IWJ2	1684 aa		11.07	□□□□□ -0.64
NR1I3-231	ENST00000512340	UNC13B	O14795	1591 aa		11.07	□□□□□ -0.64
NR1I3-231	ENST00000512340	CEP152	O94986	1710 aa		11.06	□□□□□ -0.64
NR1I3-231	ENST00000512340	LTBP4	Q8N2S1	1624 aa		11.06	□□□□□ -0.64
NR1I3-231	ENST00000512340	HDGF	P51858	240 aa	Known RBP	11.06	□□□□□ -0.64
NR1I3-231	ENST00000512340	VWDE	Q8N2E2	1590 aa		11.06	□□□□□ -0.64
NR1I3-231	ENST00000512340	A2ML1	A8K2U0	1454 aa		11.06	□□□□□ -0.64
NR1I3-231	ENST00000512340	ERVK-7	P63135	1459 aa		11.06	□□□□□ -0.64
NR1I3-231	ENST00000512340	PKD2	Q13563	968 aa		11.05	□□□□□ -0.64
NR1I3-231	ENST00000512340	SLC4A1AP	Q9BWU0	796 aa	Known RBP	11.05	□□□□□ -0.64
NR1I3-231	ENST00000512340	SETD5	Q9C0A6	1442 aa		11.05	□□□□□ -0.64
NR1I3-231	ENST00000512340	TET3	O43151	1660 aa		11.04	□□□□□ -0.64
NR1I3-231	ENST00000512340	EFCAB6	Q5THR3	1501 aa		11.04	□□□□□ -0.64
NR1I3-231	ENST00000512340	CFAP65	Q6ZU64	1925 aa	Known RBP	11.04	□□□□□ -0.64
NR1I3-231	ENST00000512340	IQGAP3	Q86VI3	1631 aa		11.03	□□□□□ -0.64
NR1I3-231	ENST00000512340	HRC	P23327	699 aa		11.03	□□□□□ -0.64
NR1I3-231	ENST00000512340	ANKLE2	Q86XL3	938 aa		11.03	□□□□□ -0.64
NR1I3-231	ENST00000512340	EID1	Q9Y6B2	187 aa		11.03	□□□□□ -0.64
NR1I3-231	ENST00000512340	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.03	□□□□□ -0.64
NR1I3-231	ENST00000512340	MYO3A	Q8NEV4	1616 aa		11.02	□□□□□ -0.64
NR1I3-231	ENST00000512340	PLA2R1	Q13018	1463 aa		11.02	□□□□□ -0.65
NR1I3-231	ENST00000512340	UGGT1	Q9NYU2	1555 aa		11.01	□□□□□ -0.65
NR1I3-231	ENST00000512340	ZNF142	P52746	1687 aa	Predicted RBP	11.01	□□□□□ -0.65
NR1I3-231	ENST00000512340	CHGA	P10645	457 aa	Known RBP	11	□□□□□ -0.65
NR1I3-231	ENST00000512340	TRIM26	Q12899	539 aa	Predicted RBP	11	□□□□□ -0.65
NR1I3-231	ENST00000512340	NOS1	P29475	1434 aa		10.99	□□□□□ -0.65
NR1I3-231	ENST00000512340	IDI1	Q13907	227 aa		10.98	□□□□□ -0.65
NR1I3-231	ENST00000512340	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	10.98	□□□□□ -0.65
NR1I3-231	ENST00000512340	MPHOSPH9	Q99550	1183 aa		10.98	□□□□□ -0.65
NR1I3-231	ENST00000512340	UBAP1L	F5GYI3	381 aa		10.97	□□□□□ -0.65
NR1I3-231	ENST00000512340	PPP1R15A	O75807	674 aa	Predicted RBP	10.97	□□□□□ -0.65
NR1I3-231	ENST00000512340	RAB3GAP2	Q9H2M9	1393 aa		10.97	□□□□□ -0.65
NR1I3-231	ENST00000512340	TXNDC2	Q86VQ3	553 aa		10.96	□□□□□ -0.65
NR1I3-231	ENST00000512340	BCAN	Q96GW7	911 aa		10.96	□□□□□ -0.65
NR1I3-231	ENST00000512340	NCKAP5L	Q9HCH0	1330 aa		10.95	□□□□□ -0.66
NR1I3-231	ENST00000512340	ZNF326	Q5BKZ1	582 aa	Known RBP	10.95	□□□□□ -0.66
NR1I3-231	ENST00000512340		E9PCH4	1651 aa		10.95	□□□□□ -0.66
NR1I3-231	ENST00000512340	KDM5A	P29375	1690 aa	Known RBP	10.95	□□□□□ -0.66
NR1I3-231	ENST00000512340	CPS1	P31327	1500 aa		10.94	□□□□□ -0.66
NR1I3-231	ENST00000512340	TMEM2	Q9UHN6	1383 aa		10.93	□□□□□ -0.66
NR1I3-231	ENST00000512340	CCDC144A	A2RUR9	1427 aa		10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	SYNM	O15061	1565 aa		10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	TOM1	O60784	492 aa		10.92	□□□□□ -0.66
NR1I3-231	ENST00000512340	ADGRB3	O60242	1522 aa		10.92	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms