RNA–Protein interactions for RNA: ENST00000512274.1

PDLIM5-217, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2 BASIC

Gene PDLIM5, Length 372 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-217ENST00000512274 PLXNC1O60486 1568 aa16.71■□□□□ 0.27
PDLIM5-217ENST00000512274 TNRQ92752 1358 aa16.69■□□□□ 0.26
PDLIM5-217ENST00000512274 SETD1AO15047 1707 aaKnown RBP16.69■□□□□ 0.26
PDLIM5-217ENST00000512274 NPHP4O75161 1426 aaPredicted RBP16.69■□□□□ 0.26
PDLIM5-217ENST00000512274 INO80Q9ULG1 1556 aaPredicted RBP16.68■□□□□ 0.26
PDLIM5-217ENST00000512274 LRRC7Q96NW7 1537 aa16.67■□□□□ 0.26
PDLIM5-217ENST00000512274 RNF17Q9BXT8 1623 aaKnown RBP16.67■□□□□ 0.26
PDLIM5-217ENST00000512274 THEMISQ8N1K5 641 aaPredicted RBP16.65■□□□□ 0.26
PDLIM5-217ENST00000512274 IQGAP1P46940 1657 aa16.65■□□□□ 0.26
PDLIM5-217ENST00000512274 ADGBQ8N7X0 1667 aa16.65■□□□□ 0.26
PDLIM5-217ENST00000512274 DEPDC5O75140 1603 aa16.63■□□□□ 0.25
PDLIM5-217ENST00000512274 UGGT1Q9NYU2 1555 aa16.62■□□□□ 0.25
PDLIM5-217ENST00000512274 MED14O60244 1454 aa16.61■□□□□ 0.25
PDLIM5-217ENST00000512274 GPATCH8Q9UKJ3 1502 aaKnown RBP16.61■□□□□ 0.25
PDLIM5-217ENST00000512274 CCDC18Q5T9S5 1454 aa16.61■□□□□ 0.25
PDLIM5-217ENST00000512274 CFDP1Q9UEE9 299 aaPredicted RBP16.6■□□□□ 0.25
PDLIM5-217ENST00000512274 FAM135AQ9P2D6 1515 aa16.6■□□□□ 0.25
PDLIM5-217ENST00000512274 SYNMO15061 1565 aa16.6■□□□□ 0.25
PDLIM5-217ENST00000512274 KIF3BO15066 747 aa16.59■□□□□ 0.25
PDLIM5-217ENST00000512274 PZPP20742 1482 aa16.58■□□□□ 0.24
PDLIM5-217ENST00000512274 MIA2Q96PC5 1412 aa16.57■□□□□ 0.24
PDLIM5-217ENST00000512274 KIAA1107Q9UPP5 1409 aa16.57■□□□□ 0.24
PDLIM5-217ENST00000512274 XIRP1Q702N8 1843 aaKnown RBP16.56■□□□□ 0.24
PDLIM5-217ENST00000512274 PLEKHH2Q8IVE3 1493 aa16.55■□□□□ 0.24
PDLIM5-217ENST00000512274 CASKIN1Q8WXD9 1431 aa16.55■□□□□ 0.24
PDLIM5-217ENST00000512274 WASHC2CQ9Y4E1 1318 aa16.55■□□□□ 0.24
PDLIM5-217ENST00000512274 NLRP1Q9C000 1473 aa16.54■□□□□ 0.24
PDLIM5-217ENST00000512274 ZNF644Q9H582 1327 aaPredicted RBP16.54■□□□□ 0.24
PDLIM5-217ENST00000512274 KDM5DQ9BY66 1539 aa16.54■□□□□ 0.24
PDLIM5-217ENST00000512274 DHX29Q7Z478 1369 aaKnown RBP16.53■□□□□ 0.24
PDLIM5-217ENST00000512274 CEP162Q5TB80 1403 aa16.53■□□□□ 0.24
PDLIM5-217ENST00000512274 ZC3H13Q5T200 1668 aaKnown RBP16.53■□□□□ 0.24
PDLIM5-217ENST00000512274 CCNB3Q8WWL7 1395 aa16.52■□□□□ 0.24
PDLIM5-217ENST00000512274 UPF1Q92900 1129 aaKnown RBP eCLIP16.51■□□□□ 0.23
PDLIM5-217ENST00000512274 CFAP65Q6ZU64 1925 aaKnown RBP16.49■□□□□ 0.23
PDLIM5-217ENST00000512274 FAM135BQ49AJ0 1406 aa16.49■□□□□ 0.23
PDLIM5-217ENST00000512274 ROBO1Q9Y6N7 1651 aa16.48■□□□□ 0.23
PDLIM5-217ENST00000512274 TRIM52Q96A61 297 aa16.47■□□□□ 0.23
PDLIM5-217ENST00000512274 RTEL1-TNFRSF6BF6WH68 1400 aa16.46■□□□□ 0.23
PDLIM5-217ENST00000512274 RBM33Q96EV2 1170 aaKnown RBP16.45■□□□□ 0.22
PDLIM5-217ENST00000512274 MBD5Q9P267 1494 aa16.45■□□□□ 0.22
PDLIM5-217ENST00000512274 LTKP29376 864 aa16.44■□□□□ 0.22
PDLIM5-217ENST00000512274 TXNDC2Q86VQ3 553 aa16.44■□□□□ 0.22
PDLIM5-217ENST00000512274 UBR1Q8IWV7 1749 aa16.44■□□□□ 0.22
PDLIM5-217ENST00000512274 SCAF11Q99590 1463 aaKnown RBP16.43■□□□□ 0.22
PDLIM5-217ENST00000512274 FYCO1Q9BQS8 1478 aa16.43■□□□□ 0.22
PDLIM5-217ENST00000512274 PHLPP1O60346 1717 aa16.42■□□□□ 0.22
PDLIM5-217ENST00000512274 TMEM94Q12767 1356 aa16.4■□□□□ 0.22
PDLIM5-217ENST00000512274 MTUS2Q5JR59 1369 aa16.4■□□□□ 0.22
PDLIM5-217ENST00000512274 TIAM1Q13009 1591 aa16.4■□□□□ 0.22
PDLIM5-217ENST00000512274 ERVK-7P63135 1459 aa16.38■□□□□ 0.21
PDLIM5-217ENST00000512274 PROSER2Q86WR7 435 aaPredicted RBP16.38■□□□□ 0.21
PDLIM5-217ENST00000512274 NCOA2Q15596 1464 aa16.37■□□□□ 0.21
PDLIM5-217ENST00000512274 MEX3CQ5U5Q3 659 aaKnown RBP16.37■□□□□ 0.21
PDLIM5-217ENST00000512274 JCADQ9P266 1359 aa16.37■□□□□ 0.21
PDLIM5-217ENST00000512274 CEP152O94986 1710 aa16.36■□□□□ 0.21
PDLIM5-217ENST00000512274 CCDC141Q6ZP82 1450 aa16.35■□□□□ 0.21
PDLIM5-217ENST00000512274 ABCC3O15438 1527 aa16.35■□□□□ 0.21
PDLIM5-217ENST00000512274 EID1Q9Y6B2 187 aa16.35■□□□□ 0.21
PDLIM5-217ENST00000512274 ARHGAP23Q9P227 1491 aa16.34■□□□□ 0.21
PDLIM5-217ENST00000512274 MAP3K1Q13233 1512 aa16.34■□□□□ 0.21
PDLIM5-217ENST00000512274 ZNF772Q68DY9 489 aaPredicted RBP16.33■□□□□ 0.2
PDLIM5-217ENST00000512274 VPS8Q8N3P4 1428 aa16.33■□□□□ 0.2
PDLIM5-217ENST00000512274 SLIT1O75093 1534 aa16.33■□□□□ 0.2
PDLIM5-217ENST00000512274 LRP6O75581 1613 aa16.33■□□□□ 0.2
PDLIM5-217ENST00000512274 LRRC9Q6ZRR7 1453 aa16.31■□□□□ 0.2
PDLIM5-217ENST00000512274 KCNA6P17658 529 aa16.31■□□□□ 0.2
PDLIM5-217ENST00000512274 RXRBP28702 533 aa16.31■□□□□ 0.2
PDLIM5-217ENST00000512274 SLC26A8Q96RN1 970 aa16.31■□□□□ 0.2
PDLIM5-217ENST00000512274 SLAIN2Q9P270 581 aa16.31■□□□□ 0.2
PDLIM5-217ENST00000512274 CAMSAP2Q08AD1 1489 aa16.29■□□□□ 0.2
PDLIM5-217ENST00000512274 STAG3Q9UJ98 1225 aa16.29■□□□□ 0.2
PDLIM5-217ENST00000512274 COL16A1Q07092 1604 aaPredicted RBP16.29■□□□□ 0.2
PDLIM5-217ENST00000512274 MSH6P52701 1360 aa16.28■□□□□ 0.2
PDLIM5-217ENST00000512274 PIK3C2BO00750 1634 aa16.28■□□□□ 0.2
PDLIM5-217ENST00000512274 TSPY4P0CV99 314 aa16.28■□□□□ 0.2
PDLIM5-217ENST00000512274 TSPY10P0CW01 314 aa16.28■□□□□ 0.2
PDLIM5-217ENST00000512274 RSPH4AQ5TD94 716 aa16.27■□□□□ 0.2
PDLIM5-217ENST00000512274 SPATA31A6Q5VVP1 1343 aa16.26■□□□□ 0.19
PDLIM5-217ENST00000512274 NUTM2BA6NNL0 878 aaPredicted RBP16.26■□□□□ 0.19
PDLIM5-217ENST00000512274 NUTM2EB1AL46 878 aaPredicted RBP16.26■□□□□ 0.19
PDLIM5-217ENST00000512274 NUTM2AQ8IVF1 878 aaPredicted RBP16.26■□□□□ 0.19
PDLIM5-217ENST00000512274 PRDM15P57071 1507 aaPredicted RBP16.25■□□□□ 0.19
PDLIM5-217ENST00000512274 EHBP1L1Q8N3D4 1523 aa16.25■□□□□ 0.19
PDLIM5-217ENST00000512274 MROH1Q8NDA8 1641 aa16.25■□□□□ 0.19
PDLIM5-217ENST00000512274 TMEM2Q9UHN6 1383 aa16.25■□□□□ 0.19
PDLIM5-217ENST00000512274 BCANQ96GW7 911 aa16.24■□□□□ 0.19
PDLIM5-217ENST00000512274 EIF2AK4Q9P2K8 1649 aaKnown RBP16.22■□□□□ 0.19
PDLIM5-217ENST00000512274 TET3O43151 1660 aa16.21■□□□□ 0.19
PDLIM5-217ENST00000512274 NUTM2DQ5VT03 806 aaPredicted RBP16.21■□□□□ 0.19
PDLIM5-217ENST00000512274 ARHGEF5Q12774 1597 aa16.21■□□□□ 0.18
PDLIM5-217ENST00000512274 FGD6Q6ZV73 1430 aa16.2■□□□□ 0.18
PDLIM5-217ENST00000512274 NKTRP30414 1462 aaKnown RBP16.2■□□□□ 0.18
PDLIM5-217ENST00000512274 CDK12Q9NYV4 1490 aaPredicted RBP16.2■□□□□ 0.18
PDLIM5-217ENST00000512274 SHPRHQ149N8 1683 aa16.2■□□□□ 0.18
PDLIM5-217ENST00000512274 AFF2P51816 1311 aa16.19■□□□□ 0.18
PDLIM5-217ENST00000512274 KDM5AP29375 1690 aaKnown RBP16.19■□□□□ 0.18
PDLIM5-217ENST00000512274 NWD1Q149M9 1564 aa16.19■□□□□ 0.18
PDLIM5-217ENST00000512274 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.18■□□□□ 0.18
PDLIM5-217ENST00000512274 EFCAB6Q5THR3 1501 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 233.1 ms