RNA–Protein interactions for RNA: ENST00000510129.5

UBE2D3-229, Transcript of ubiquitin conjugating enzyme E2 D3, human

TSL 3

Gene UBE2D3, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBE2D3-229	ENST00000510129	KDM5D	Q9BY66	1539 aa		32.87	■■■□□ 2.85
UBE2D3-229	ENST00000510129	ANKRD30A	Q9BXX3	1397 aa		32.85	■■■□□ 2.85
UBE2D3-229	ENST00000510129	KIF15	Q9NS87	1388 aa		32.85	■■■□□ 2.85
UBE2D3-229	ENST00000510129	RNF17	Q9BXT8	1623 aa	Known RBP	32.85	■■■□□ 2.85
UBE2D3-229	ENST00000510129	FAM50A	Q14320	339 aa	Known RBP	32.84	■■■□□ 2.85
UBE2D3-229	ENST00000510129	WASHC2C	Q9Y4E1	1318 aa		32.83	■■■□□ 2.85
UBE2D3-229	ENST00000510129	ERBIN	Q96RT1	1412 aa		32.83	■■■□□ 2.85
UBE2D3-229	ENST00000510129	HSPA2	P54652	639 aa		32.8	■■■□□ 2.84
UBE2D3-229	ENST00000510129	PTPRK	Q15262	1439 aa		32.79	■■■□□ 2.84
UBE2D3-229	ENST00000510129	ZC3H13	Q5T200	1668 aa	Known RBP	32.78	■■■□□ 2.84
UBE2D3-229	ENST00000510129	RRP7BP	Q9NSQ0	103 aa		32.78	■■■□□ 2.84
UBE2D3-229	ENST00000510129	ADGRL2	O95490	1459 aa		32.76	■■■□□ 2.84
UBE2D3-229	ENST00000510129	NCOA1	Q15788	1441 aa		32.75	■■■□□ 2.83
UBE2D3-229	ENST00000510129	PZP	P20742	1482 aa		32.74	■■■□□ 2.83
UBE2D3-229	ENST00000510129	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	32.72	■■■□□ 2.83	1e-10	■■■□□ 14.9
UBE2D3-229	ENST00000510129	CHIC2	Q9UKJ5	165 aa		32.72	■■■□□ 2.83
UBE2D3-229	ENST00000510129	ABCC3	O15438	1527 aa		32.68	■■■□□ 2.82
UBE2D3-229	ENST00000510129	DMRT2	Q9Y5R5	561 aa		32.68	■■■□□ 2.82
UBE2D3-229	ENST00000510129	MYO3A	Q8NEV4	1616 aa		32.68	■■■□□ 2.82
UBE2D3-229	ENST00000510129	PRDM15	P57071	1507 aa	Predicted RBP	32.67	■■■□□ 2.82
UBE2D3-229	ENST00000510129	MROH1	Q8NDA8	1641 aa		32.67	■■■□□ 2.82
UBE2D3-229	ENST00000510129	ZNF142	P52746	1687 aa	Predicted RBP	32.66	■■■□□ 2.82
UBE2D3-229	ENST00000510129	KANK1	Q14678	1352 aa		32.65	■■■□□ 2.82
UBE2D3-229	ENST00000510129	DEPDC5	O75140	1603 aa		32.64	■■■□□ 2.82
UBE2D3-229	ENST00000510129	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.63	■■■□□ 2.81
UBE2D3-229	ENST00000510129	TNR	Q92752	1358 aa		32.62	■■■□□ 2.81
UBE2D3-229	ENST00000510129	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	32.62	■■■□□ 2.81
UBE2D3-229	ENST00000510129	ROCK1	Q13464	1354 aa		32.61	■■■□□ 2.81
UBE2D3-229	ENST00000510129	A2ML1	A8K2U0	1454 aa		32.58	■■■□□ 2.81
UBE2D3-229	ENST00000510129	ANKRD50	Q9ULJ7	1429 aa		32.58	■■■□□ 2.81
UBE2D3-229	ENST00000510129	CAMSAP1	Q5T5Y3	1602 aa		32.58	■■■□□ 2.81
UBE2D3-229	ENST00000510129	CEP152	O94986	1710 aa		32.57	■■■□□ 2.8
UBE2D3-229	ENST00000510129	NLRP1	Q9C000	1473 aa		32.56	■■■□□ 2.8
UBE2D3-229	ENST00000510129	STRC	Q7RTU9	1775 aa		32.56	■■■□□ 2.8
UBE2D3-229	ENST00000510129	FBXO31	Q5XUX0	539 aa	Predicted RBP	32.56	■■■□□ 2.8
UBE2D3-229	ENST00000510129	ARHGAP31	Q2M1Z3	1444 aa		32.55	■■■□□ 2.8
UBE2D3-229	ENST00000510129	PLA2R1	Q13018	1463 aa		32.54	■■■□□ 2.8
UBE2D3-229	ENST00000510129	RRBP1	Q9P2E9	1410 aa	Known RBP	32.54	■■■□□ 2.8
UBE2D3-229	ENST00000510129	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	32.53	■■■□□ 2.8
UBE2D3-229	ENST00000510129	SPATA31D1	Q6ZQQ2	1576 aa		32.53	■■■□□ 2.8
UBE2D3-229	ENST00000510129	PTPRT	O14522	1441 aa		32.51	■■■□□ 2.8
UBE2D3-229	ENST00000510129	LMTK2	Q8IWU2	1503 aa		32.51	■■■□□ 2.79
UBE2D3-229	ENST00000510129	VWDE	Q8N2E2	1590 aa		32.49	■■■□□ 2.79
UBE2D3-229	ENST00000510129	ERVK-7	P63135	1459 aa		32.48	■■■□□ 2.79
UBE2D3-229	ENST00000510129	PKD2	Q13563	968 aa		32.48	■■■□□ 2.79
UBE2D3-229	ENST00000510129	ITGAE	P38570	1179 aa		32.44	■■■□□ 2.78
UBE2D3-229	ENST00000510129	THEMIS	Q8N1K5	641 aa	Predicted RBP	32.43	■■■□□ 2.78
UBE2D3-229	ENST00000510129	UGGT1	Q9NYU2	1555 aa		32.41	■■■□□ 2.78
UBE2D3-229	ENST00000510129	UNC13B	O14795	1591 aa		32.38	■■■□□ 2.77
UBE2D3-229	ENST00000510129	EFCAB6	Q5THR3	1501 aa		32.37	■■■□□ 2.77
UBE2D3-229	ENST00000510129	RPRD2	Q5VT52	1461 aa	Known RBP	32.35	■■■□□ 2.77
UBE2D3-229	ENST00000510129	NCKAP5L	Q9HCH0	1330 aa		32.33	■■■□□ 2.77
UBE2D3-229	ENST00000510129	CFAP65	Q6ZU64	1925 aa	Known RBP	32.32	■■■□□ 2.76
UBE2D3-229	ENST00000510129	TET3	O43151	1660 aa		32.31	■■■□□ 2.76
UBE2D3-229	ENST00000510129	POLR1A	O95602	1720 aa	Predicted RBP	32.3	■■■□□ 2.76
UBE2D3-229	ENST00000510129	ANKLE2	Q86XL3	938 aa		32.3	■■■□□ 2.76
UBE2D3-229	ENST00000510129	GCC2	Q8IWJ2	1684 aa		32.27	■■■□□ 2.76
UBE2D3-229	ENST00000510129	IQGAP3	Q86VI3	1631 aa		32.26	■■■□□ 2.75
UBE2D3-229	ENST00000510129	CERK	Q8TCT0	537 aa		32.25	■■■□□ 2.75
UBE2D3-229	ENST00000510129	NOS1	P29475	1434 aa		32.25	■■■□□ 2.75
UBE2D3-229	ENST00000510129	KDM5A	P29375	1690 aa	Known RBP	32.24	■■■□□ 2.75
UBE2D3-229	ENST00000510129	UBR1	Q8IWV7	1749 aa		32.24	■■■□□ 2.75
UBE2D3-229	ENST00000510129	FBXO41	Q8TF61	875 aa		32.23	■■■□□ 2.75
UBE2D3-229	ENST00000510129	SLC52A1	Q9NWF4	448 aa		32.23	■■■□□ 2.75
UBE2D3-229	ENST00000510129	NUP155	O75694	1391 aa		32.22	■■■□□ 2.75
UBE2D3-229	ENST00000510129	ILDR1	Q86SU0	546 aa	Predicted RBP	32.22	■■■□□ 2.75
UBE2D3-229	ENST00000510129	STAG3	Q9UJ98	1225 aa		32.2	■■■□□ 2.75
UBE2D3-229	ENST00000510129	MED14	O60244	1454 aa		32.19	■■■□□ 2.74
UBE2D3-229	ENST00000510129	NEURL4	Q96JN8	1562 aa		32.19	■■■□□ 2.74
UBE2D3-229	ENST00000510129	SYNM	O15061	1565 aa		32.18	■■■□□ 2.74
UBE2D3-229	ENST00000510129	PIK3C2B	O00750	1634 aa		32.18	■■■□□ 2.74
UBE2D3-229	ENST00000510129	HFM1	A2PYH4	1435 aa		32.17	■■■□□ 2.74
UBE2D3-229	ENST00000510129	NAIP	Q13075	1403 aa		32.17	■■■□□ 2.74
UBE2D3-229	ENST00000510129	SLIT1	O75093	1534 aa		32.16	■■■□□ 2.74
UBE2D3-229	ENST00000510129	IDI1	Q13907	227 aa		32.15	■■■□□ 2.74
UBE2D3-229	ENST00000510129	NPHP4	O75161	1426 aa	Predicted RBP	32.14	■■■□□ 2.74
UBE2D3-229	ENST00000510129	LTBP4	Q8N2S1	1624 aa		32.13	■■■□□ 2.73
UBE2D3-229	ENST00000510129	ARHGAP23	Q9P227	1491 aa		32.13	■■■□□ 2.73
UBE2D3-229	ENST00000510129	EID1	Q9Y6B2	187 aa		32.13	■■■□□ 2.73
UBE2D3-229	ENST00000510129		E9PCH4	1651 aa		32.12	■■■□□ 2.73
UBE2D3-229	ENST00000510129	IQSEC2	Q5JU85	1478 aa		32.11	■■■□□ 2.73
UBE2D3-229	ENST00000510129	SCAF11	Q99590	1463 aa	Known RBP	32.1	■■■□□ 2.73
UBE2D3-229	ENST00000510129	IQGAP1	P46940	1657 aa		32.1	■■■□□ 2.73
UBE2D3-229	ENST00000510129	TMEM2	Q9UHN6	1383 aa		32.09	■■■□□ 2.73
UBE2D3-229	ENST00000510129	ADGRB3	O60242	1522 aa		32.09	■■■□□ 2.73
UBE2D3-229	ENST00000510129	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	32.06	■■■□□ 2.72
UBE2D3-229	ENST00000510129	TXNDC2	Q86VQ3	553 aa		32.06	■■■□□ 2.72
UBE2D3-229	ENST00000510129	ACIN1	Q9UKV3	1341 aa	Known RBP	32.02	■■■□□ 2.72
UBE2D3-229	ENST00000510129	HDGF	P51858	240 aa	Known RBP	32.01	■■■□□ 2.71
UBE2D3-229	ENST00000510129	CPS1	P31327	1500 aa		32	■■■□□ 2.71
UBE2D3-229	ENST00000510129	LTK	P29376	864 aa		31.98	■■■□□ 2.71
UBE2D3-229	ENST00000510129	TRIM52	Q96A61	297 aa		31.96	■■■□□ 2.71
UBE2D3-229	ENST00000510129	TMEM131L	A2VDJ0	1609 aa		31.95	■■■□□ 2.71
UBE2D3-229	ENST00000510129	SPHKAP	Q2M3C7	1700 aa		31.94	■■■□□ 2.7
UBE2D3-229	ENST00000510129	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	31.89	■■■□□ 2.7
UBE2D3-229	ENST00000510129	CHGA	P10645	457 aa	Known RBP	31.88	■■■□□ 2.69
UBE2D3-229	ENST00000510129	ZFYVE9	O95405	1425 aa		31.87	■■■□□ 2.69
UBE2D3-229	ENST00000510129	SLC4A1AP	Q9BWU0	796 aa	Known RBP	31.86	■■■□□ 2.69
UBE2D3-229	ENST00000510129	MYO5B	Q9ULV0	1848 aa		31.86	■■■□□ 2.69
UBE2D3-229	ENST00000510129	RIMS2	Q9UQ26	1411 aa		31.85	■■■□□ 2.69

Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms