RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 TCOF1Q13428 1488 aaKnown RBP27.94■■■□□ 2.06
TPM3-220ENST00000509601 NCOA1Q15788 1441 aa27.92■■■□□ 2.06
TPM3-220ENST00000509601 CERKQ8TCT0 537 aa27.91■■■□□ 2.06
TPM3-220ENST00000509601 RRP7BPQ9NSQ0 103 aa27.91■■■□□ 2.06
TPM3-220ENST00000509601 KDM5DQ9BY66 1539 aa27.91■■■□□ 2.06
TPM3-220ENST00000509601 PTPRTO14522 1441 aa27.91■■■□□ 2.06
TPM3-220ENST00000509601 FAM135AQ9P2D6 1515 aa27.9■■■□□ 2.06
TPM3-220ENST00000509601 DAPK1P53355 1430 aa27.9■■■□□ 2.06
TPM3-220ENST00000509601 CAMSAP1Q5T5Y3 1602 aa27.89■■■□□ 2.05
TPM3-220ENST00000509601 PZPP20742 1482 aa27.88■■■□□ 2.05
TPM3-220ENST00000509601 SHANK2Q9UPX8 1470 aa27.88■■■□□ 2.05
TPM3-220ENST00000509601 NCKAP5LQ9HCH0 1330 aa27.88■■■□□ 2.05
TPM3-220ENST00000509601 DUOX2Q9NRD8 1548 aa27.87■■■□□ 2.05
TPM3-220ENST00000509601 MYO3AQ8NEV4 1616 aa27.86■■■□□ 2.05
TPM3-220ENST00000509601 CHIC2Q9UKJ5 165 aa27.86■■■□□ 2.05
TPM3-220ENST00000509601 KIF15Q9NS87 1388 aa27.86■■■□□ 2.05
TPM3-220ENST00000509601 RNF17Q9BXT8 1623 aaKnown RBP27.85■■■□□ 2.05
TPM3-220ENST00000509601 TNRQ92752 1358 aa27.85■■■□□ 2.05
TPM3-220ENST00000509601 CEP170BQ9Y4F5 1589 aaPredicted RBP27.84■■■□□ 2.05
TPM3-220ENST00000509601 DNMT1P26358 1616 aaKnown RBP27.84■■■□□ 2.05
TPM3-220ENST00000509601 EIF2AK4Q9P2K8 1649 aaKnown RBP27.83■■■□□ 2.05
TPM3-220ENST00000509601 ZNF142P52746 1687 aaPredicted RBP27.82■■■□□ 2.04
TPM3-220ENST00000509601 A2ML1A8K2U0 1454 aa27.82■■■□□ 2.04
TPM3-220ENST00000509601 CROCC2H7BZ55 1655 aa27.81■■■□□ 2.04
TPM3-220ENST00000509601 PKD2Q13563 968 aa27.81■■■□□ 2.04
TPM3-220ENST00000509601 ABCC3O15438 1527 aa27.81■■■□□ 2.04
TPM3-220ENST00000509601 MROH1Q8NDA8 1641 aa27.81■■■□□ 2.04
TPM3-220ENST00000509601 PLA2R1Q13018 1463 aa27.79■■■□□ 2.04
TPM3-220ENST00000509601 FAM50AQ14320 339 aaKnown RBP27.79■■■□□ 2.04
TPM3-220ENST00000509601 ERBINQ96RT1 1412 aa27.77■■■□□ 2.04
TPM3-220ENST00000509601 ANKRD30AQ9BXX3 1397 aa27.77■■■□□ 2.04
TPM3-220ENST00000509601 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.73■■■□□ 2.034e-19■■■■■ 31.6
TPM3-220ENST00000509601 ZC3H13Q5T200 1668 aaKnown RBP27.72■■■□□ 2.03
TPM3-220ENST00000509601 PPARGC1BQ86YN6 1023 aaKnown RBP27.71■■■□□ 2.03
TPM3-220ENST00000509601 THEMISQ8N1K5 641 aaPredicted RBP27.7■■■□□ 2.02
TPM3-220ENST00000509601 LTBP4Q8N2S1 1624 aa27.7■■■□□ 2.02
TPM3-220ENST00000509601 NLRP1Q9C000 1473 aa27.7■■■□□ 2.02
TPM3-220ENST00000509601 ADGRL2O95490 1459 aa27.69■■■□□ 2.02
TPM3-220ENST00000509601 SPATA31D1Q6ZQQ2 1576 aa27.69■■■□□ 2.02
TPM3-220ENST00000509601 CEP152O94986 1710 aa27.68■■■□□ 2.02
TPM3-220ENST00000509601 ERVK-7P63135 1459 aa27.68■■■□□ 2.02
TPM3-220ENST00000509601 CFAP65Q6ZU64 1925 aaKnown RBP27.67■■■□□ 2.02
TPM3-220ENST00000509601 PRDM15P57071 1507 aaPredicted RBP27.67■■■□□ 2.02
TPM3-220ENST00000509601 ARHGAP31Q2M1Z3 1444 aa27.67■■■□□ 2.02
TPM3-220ENST00000509601 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.66■■■□□ 2.023e-7■■□□□ 11.8
TPM3-220ENST00000509601 ZNF335Q9H4Z2 1342 aaPredicted RBP27.65■■■□□ 2.02
TPM3-220ENST00000509601 ANKLE2Q86XL3 938 aa27.64■■■□□ 2.02
TPM3-220ENST00000509601 DEPDC5O75140 1603 aa27.63■■■□□ 2.01
TPM3-220ENST00000509601 UGGT1Q9NYU2 1555 aa27.63■■■□□ 2.01
TPM3-220ENST00000509601 KANK1Q14678 1352 aa27.61■■■□□ 2.01
TPM3-220ENST00000509601 VWDEQ8N2E2 1590 aa27.59■■■□□ 2.01
TPM3-220ENST00000509601 ANKRD50Q9ULJ7 1429 aa27.58■■■□□ 2.01
TPM3-220ENST00000509601 NEURL4Q96JN8 1562 aa27.57■■■□□ 2
TPM3-220ENST00000509601 LMTK2Q8IWU2 1503 aa27.57■■■□□ 2
TPM3-220ENST00000509601 MED14O60244 1454 aa27.52■■■□□ 2
TPM3-220ENST00000509601 POLR1AO95602 1720 aaPredicted RBP27.52■■■□□ 2
TPM3-220ENST00000509601 ROCK1Q13464 1354 aa27.51■■□□□ 1.99
TPM3-220ENST00000509601 IQSEC2Q5JU85 1478 aa27.51■■□□□ 1.99
TPM3-220ENST00000509601 ITGAEP38570 1179 aa27.5■■□□□ 1.99
TPM3-220ENST00000509601 IDI1Q13907 227 aa27.5■■□□□ 1.99
TPM3-220ENST00000509601 NPHP4O75161 1426 aaPredicted RBP27.5■■□□□ 1.99
TPM3-220ENST00000509601 UBR1Q8IWV7 1749 aa27.47■■□□□ 1.99
TPM3-220ENST00000509601 LTKP29376 864 aa27.47■■□□□ 1.99
TPM3-220ENST00000509601 NOS1P29475 1434 aa27.46■■□□□ 1.99
TPM3-220ENST00000509601 TXNDC2Q86VQ3 553 aa27.44■■□□□ 1.98
TPM3-220ENST00000509601 ARHGAP23Q9P227 1491 aa27.43■■□□□ 1.98
TPM3-220ENST00000509601 EFCAB6Q5THR3 1501 aa27.42■■□□□ 1.98
TPM3-220ENST00000509601 SLIT1O75093 1534 aa27.41■■□□□ 1.98
TPM3-220ENST00000509601 SLC52A1Q9NWF4 448 aa27.4■■□□□ 1.98
TPM3-220ENST00000509601 STAG3Q9UJ98 1225 aa27.4■■□□□ 1.98
TPM3-220ENST00000509601 PIK3C2BO00750 1634 aa27.4■■□□□ 1.98
TPM3-220ENST00000509601 SYNMO15061 1565 aa27.39■■□□□ 1.98
TPM3-220ENST00000509601 TMEM2Q9UHN6 1383 aa27.38■■□□□ 1.97
TPM3-220ENST00000509601 RRBP1Q9P2E9 1410 aaKnown RBP27.38■■□□□ 1.97
TPM3-220ENST00000509601 SCAF11Q99590 1463 aaKnown RBP27.38■■□□□ 1.97
TPM3-220ENST00000509601 IQGAP1P46940 1657 aa27.37■■□□□ 1.97
TPM3-220ENST00000509601 UBAP1LF5GYI3 381 aa27.37■■□□□ 1.97
TPM3-220ENST00000509601 EID1Q9Y6B2 187 aa27.36■■□□□ 1.97
TPM3-220ENST00000509601 RPRD2Q5VT52 1461 aaKnown RBP27.36■■□□□ 1.97
TPM3-220ENST00000509601 UNC13BO14795 1591 aa27.35■■□□□ 1.97
TPM3-220ENST00000509601 CPS1P31327 1500 aa27.34■■□□□ 1.97
TPM3-220ENST00000509601 TET3O43151 1660 aa27.33■■□□□ 1.97
TPM3-220ENST00000509601 NUP155O75694 1391 aa27.32■■□□□ 1.96
TPM3-220ENST00000509601 KDM5AP29375 1690 aaKnown RBP27.3■■□□□ 1.96
TPM3-220ENST00000509601 STRCP1A6NGW2 1772 aa27.27■■□□□ 1.96
TPM3-220ENST00000509601 GCC2Q8IWJ2 1684 aa27.27■■□□□ 1.96
TPM3-220ENST00000509601 IQGAP3Q86VI3 1631 aa27.25■■□□□ 1.95
TPM3-220ENST00000509601 ADGRB3O60242 1522 aa27.24■■□□□ 1.95
TPM3-220ENST00000509601 E9PCH4 1651 aa27.24■■□□□ 1.95
TPM3-220ENST00000509601 LRRC7Q96NW7 1537 aa27.22■■□□□ 1.95
TPM3-220ENST00000509601 TOM1O60784 492 aa27.22■■□□□ 1.95
TPM3-220ENST00000509601 NAIPQ13075 1403 aa27.2■■□□□ 1.94
TPM3-220ENST00000509601 SLC26A8Q96RN1 970 aa27.2■■□□□ 1.94
TPM3-220ENST00000509601 ZFYVE9O95405 1425 aa27.17■■□□□ 1.94
TPM3-220ENST00000509601 CHGAP10645 457 aaKnown RBP27.17■■□□□ 1.94
TPM3-220ENST00000509601 PIP4K2BP78356 416 aa27.17■■□□□ 1.94
TPM3-220ENST00000509601 TMEM131LA2VDJ0 1609 aa27.16■■□□□ 1.94
TPM3-220ENST00000509601 KCNA6P17658 529 aa27.15■■□□□ 1.94
TPM3-220ENST00000509601 HDGFP51858 240 aaKnown RBP27.15■■□□□ 1.94
TPM3-220ENST00000509601 MYO5BQ9ULV0 1848 aa27.15■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms