RNA–Protein interactions for RNA: ENST00000509388.5

RNF4-213, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-213ENST00000509388 WASHC2CQ9Y4E1 1318 aa22.09■■□□□ 1.13
RNF4-213ENST00000509388 TRIM52Q96A61 297 aa22.09■■□□□ 1.13
RNF4-213ENST00000509388 SIGLEC1Q9BZZ2 1709 aa22.08■■□□□ 1.12
RNF4-213ENST00000509388 ACIN1Q9UKV3 1341 aaKnown RBP22.07■■□□□ 1.12
RNF4-213ENST00000509388 GCC2Q8IWJ2 1684 aa22.05■■□□□ 1.12
RNF4-213ENST00000509388 NUP155O75694 1391 aa22.04■■□□□ 1.12
RNF4-213ENST00000509388 RAB3GAP2Q9H2M9 1393 aa22.04■■□□□ 1.12
RNF4-213ENST00000509388 BCORL1Q5H9F3 1711 aa22.03■■□□□ 1.12
RNF4-213ENST00000509388 HRCP23327 699 aa22.01■■□□□ 1.11
RNF4-213ENST00000509388 CNTLNQ9NXG0 1405 aa22■■□□□ 1.11
RNF4-213ENST00000509388 RNF17Q9BXT8 1623 aaKnown RBP22■■□□□ 1.11
RNF4-213ENST00000509388 KDM4FA0A1W2PPD8 638 aa22■■□□□ 1.11
RNF4-213ENST00000509388 PLPPR3Q6T4P5 718 aa22■■□□□ 1.11
RNF4-213ENST00000509388 PRDM15P57071 1507 aaPredicted RBP21.96■■□□□ 1.11
RNF4-213ENST00000509388 KDM5DQ9BY66 1539 aa21.96■■□□□ 1.11
RNF4-213ENST00000509388 DEPDC5O75140 1603 aa21.95■■□□□ 1.1
RNF4-213ENST00000509388 ADAMTSL3P82987 1691 aa21.95■■□□□ 1.1
RNF4-213ENST00000509388 SLC4A1APQ9BWU0 796 aaKnown RBP21.95■■□□□ 1.1
RNF4-213ENST00000509388 ZMYM3Q14202 1370 aa21.95■■□□□ 1.1
RNF4-213ENST00000509388 FAM135AQ9P2D6 1515 aa21.95■■□□□ 1.1
RNF4-213ENST00000509388 UNC13BO14795 1591 aa21.94■■□□□ 1.1
RNF4-213ENST00000509388 MROH1Q8NDA8 1641 aa21.94■■□□□ 1.1
RNF4-213ENST00000509388 MADDQ8WXG6 1647 aa21.94■■□□□ 1.1
RNF4-213ENST00000509388 ABCC3O15438 1527 aa21.93■■□□□ 1.1
RNF4-213ENST00000509388 CEBPAP49715 358 aaPredicted RBP21.92■■□□□ 1.1
RNF4-213ENST00000509388 FER1L4A9Z1Z3 1794 aa21.91■■□□□ 1.1
RNF4-213ENST00000509388 MPHOSPH9Q99550 1183 aa21.9■■□□□ 1.1
RNF4-213ENST00000509388 CLTCQ00610 1675 aaKnown RBP21.9■■□□□ 1.1
RNF4-213ENST00000509388 RIMS1Q86UR5 1692 aaKnown RBP21.89■■□□□ 1.1
RNF4-213ENST00000509388 VWDEQ8N2E2 1590 aa21.89■■□□□ 1.09
RNF4-213ENST00000509388 PTPRMP28827 1452 aa21.89■■□□□ 1.09
RNF4-213ENST00000509388 ZC3H13Q5T200 1668 aaKnown RBP21.88■■□□□ 1.09
RNF4-213ENST00000509388 LMTK2Q8IWU2 1503 aa21.88■■□□□ 1.09
RNF4-213ENST00000509388 PKD2Q13563 968 aa21.87■■□□□ 1.09
RNF4-213ENST00000509388 IQGAP3Q86VI3 1631 aa21.86■■□□□ 1.09
RNF4-213ENST00000509388 ARHGAP31Q2M1Z3 1444 aa21.84■■□□□ 1.09
RNF4-213ENST00000509388 FBXO31Q5XUX0 539 aaPredicted RBP21.84■■□□□ 1.09
RNF4-213ENST00000509388 PZPP20742 1482 aa21.83■■□□□ 1.09
RNF4-213ENST00000509388 CEP152O94986 1710 aa21.83■■□□□ 1.09
RNF4-213ENST00000509388 MROH2AA6NES4 1674 aa21.82■■□□□ 1.08
RNF4-213ENST00000509388 NPATQ14207 1427 aa21.82■■□□□ 1.08
RNF4-213ENST00000509388 CAMSAP1Q5T5Y3 1602 aa21.81■■□□□ 1.08
RNF4-213ENST00000509388 EFCAB6Q5THR3 1501 aa21.8■■□□□ 1.08
RNF4-213ENST00000509388 TET3O43151 1660 aa21.8■■□□□ 1.08
RNF4-213ENST00000509388 AEBP2Q6ZN18 517 aaPredicted RBP21.8■■□□□ 1.08
RNF4-213ENST00000509388 RPRD2Q5VT52 1461 aaKnown RBP21.79■■□□□ 1.08
RNF4-213ENST00000509388 FOXD1Q16676 465 aa21.79■■□□□ 1.08
RNF4-213ENST00000509388 TNRQ92752 1358 aa21.76■■□□□ 1.07
RNF4-213ENST00000509388 C3P01024 1663 aa21.76■■□□□ 1.07
RNF4-213ENST00000509388 ERVK-7P63135 1459 aa21.75■■□□□ 1.07
RNF4-213ENST00000509388 SLC52A1Q9NWF4 448 aa21.73■■□□□ 1.07
RNF4-213ENST00000509388 STAG3Q9UJ98 1225 aa21.71■■□□□ 1.07
RNF4-213ENST00000509388 E9PCH4 1651 aa21.71■■□□□ 1.07
RNF4-213ENST00000509388 NOS1P29475 1434 aa21.71■■□□□ 1.07
RNF4-213ENST00000509388 SPATA31D1Q6ZQQ2 1576 aa21.7■■□□□ 1.06
RNF4-213ENST00000509388 DHX57Q6P158 1386 aaKnown RBP21.68■■□□□ 1.06
RNF4-213ENST00000509388 PTPRTO14522 1441 aa21.68■■□□□ 1.06
RNF4-213ENST00000509388 PREX1Q8TCU6 1659 aa21.67■■□□□ 1.06
RNF4-213ENST00000509388 UHRF1BP1Q6BDS2 1440 aa21.67■■□□□ 1.06
RNF4-213ENST00000509388 CHGAP10645 457 aaKnown RBP21.67■■□□□ 1.06
RNF4-213ENST00000509388 IDI1Q13907 227 aa21.67■■□□□ 1.06
RNF4-213ENST00000509388 CFAP65Q6ZU64 1925 aaKnown RBP21.66■■□□□ 1.06
RNF4-213ENST00000509388 NLRP1Q9C000 1473 aa21.64■■□□□ 1.06
RNF4-213ENST00000509388 CCDC144AA2RUR9 1427 aa21.63■■□□□ 1.05
RNF4-213ENST00000509388 CCER1Q8TC90 406 aaPredicted RBP21.63■■□□□ 1.05
RNF4-213ENST00000509388 ANKRD30BQ9BXX2 1392 aa21.62■■□□□ 1.05
RNF4-213ENST00000509388 PLA2R1Q13018 1463 aa21.62■■□□□ 1.05
RNF4-213ENST00000509388 TRPM2O94759 1503 aa21.61■■□□□ 1.05
RNF4-213ENST00000509388 THEMISQ8N1K5 641 aaPredicted RBP21.61■■□□□ 1.05
RNF4-213ENST00000509388 SYNMO15061 1565 aa21.61■■□□□ 1.05
RNF4-213ENST00000509388 SETD1BQ9UPS6 1966 aaKnown RBP21.6■■□□□ 1.05
RNF4-213ENST00000509388 SPHKAPQ2M3C7 1700 aa21.6■■□□□ 1.05
RNF4-213ENST00000509388 A2ML1A8K2U0 1454 aa21.59■■□□□ 1.05
RNF4-213ENST00000509388 UGGT1Q9NYU2 1555 aa21.57■■□□□ 1.04
RNF4-213ENST00000509388 ZNF326Q5BKZ1 582 aaKnown RBP21.57■■□□□ 1.04
RNF4-213ENST00000509388 MYO3AQ8NEV4 1616 aa21.57■■□□□ 1.04
RNF4-213ENST00000509388 NEUROD1Q13562 356 aa21.55■■□□□ 1.04
RNF4-213ENST00000509388 CEP170BQ9Y4F5 1589 aaPredicted RBP21.55■■□□□ 1.04
RNF4-213ENST00000509388 HDGFP51858 240 aaKnown RBP21.53■■□□□ 1.04
RNF4-213ENST00000509388 HSPA2P54652 639 aa21.53■■□□□ 1.04
RNF4-213ENST00000509388 RGL3Q3MIN7 710 aa21.53■■□□□ 1.04
RNF4-213ENST00000509388 SIN3AQ96ST3 1273 aa21.53■■□□□ 1.04
RNF4-213ENST00000509388 PIK3C2BO00750 1634 aa21.51■■□□□ 1.03
RNF4-213ENST00000509388 CLTCL1P53675 1640 aa21.51■■□□□ 1.03
RNF4-213ENST00000509388 LMTK3Q96Q04 1460 aa21.51■■□□□ 1.03
RNF4-213ENST00000509388 EID1Q9Y6B2 187 aa21.5■■□□□ 1.03
RNF4-213ENST00000509388 CLSPNQ9HAW4 1339 aa21.5■■□□□ 1.03
RNF4-213ENST00000509388 ADGRB3O60242 1522 aa21.5■■□□□ 1.03
RNF4-213ENST00000509388 PPP1R15AO75807 674 aaPredicted RBP21.48■■□□□ 1.03
RNF4-213ENST00000509388 ANKLE2Q86XL3 938 aa21.48■■□□□ 1.03
RNF4-213ENST00000509388 TXNDC2Q86VQ3 553 aa21.47■■□□□ 1.03
RNF4-213ENST00000509388 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.47■■□□□ 1.03
RNF4-213ENST00000509388 TMEM2Q9UHN6 1383 aa21.47■■□□□ 1.03
RNF4-213ENST00000509388 ZNF142P52746 1687 aaPredicted RBP21.47■■□□□ 1.03
RNF4-213ENST00000509388 RPGRIP1LQ68CZ1 1315 aa21.46■■□□□ 1.03
RNF4-213ENST00000509388 TMEM131LA2VDJ0 1609 aa21.44■■□□□ 1.02
RNF4-213ENST00000509388 UBR1Q8IWV7 1749 aa21.43■■□□□ 1.02
RNF4-213ENST00000509388 NUTM2DQ5VT03 806 aaPredicted RBP21.43■■□□□ 1.02
RNF4-213ENST00000509388 BCANQ96GW7 911 aa21.43■■□□□ 1.02
RNF4-213ENST00000509388 SPATA31E1Q6ZUB1 1445 aa21.43■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms