RNA–Protein interactions for RNA: ENST00000507875.5

CLCN3-206, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 2

Gene CLCN3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-206ENST00000507875 FMN1Q68DA7 1419 aa10.74□□□□□ -0.69
CLCN3-206ENST00000507875 ONECUT3O60422 494 aaPredicted RBP10.74□□□□□ -0.69
CLCN3-206ENST00000507875 KIAA0556O60303 1618 aa10.74□□□□□ -0.69
CLCN3-206ENST00000507875 PHF8Q9UPP1 1060 aa10.73□□□□□ -0.69
CLCN3-206ENST00000507875 KCTD17Q8N5Z5 321 aa10.72□□□□□ -0.69
CLCN3-206ENST00000507875 JPH4Q96JJ6 628 aa10.71□□□□□ -0.69
CLCN3-206ENST00000507875 FYCO1Q9BQS8 1478 aa10.71□□□□□ -0.7
CLCN3-206ENST00000507875 CARMIL2Q6F5E8 1435 aa10.71□□□□□ -0.7
CLCN3-206ENST00000507875 CFAP43Q8NDM7 1665 aa10.71□□□□□ -0.7
CLCN3-206ENST00000507875 EFCAB3Q8N7B9 438 aa10.7□□□□□ -0.7
CLCN3-206ENST00000507875 SMYD5Q6GMV2 418 aa10.7□□□□□ -0.7
CLCN3-206ENST00000507875 TSPYL2Q9H2G4 693 aaPredicted RBP10.69□□□□□ -0.7
CLCN3-206ENST00000507875 CASKIN1Q8WXD9 1431 aa10.69□□□□□ -0.7
CLCN3-206ENST00000507875 DISP1Q96F81 1524 aa10.69□□□□□ -0.7
CLCN3-206ENST00000507875 IGSF3O75054 1194 aa10.68□□□□□ -0.7
CLCN3-206ENST00000507875 PDAP1Q13442 181 aaKnown RBP10.68□□□□□ -0.7
CLCN3-206ENST00000507875 PRG4Q92954 1404 aaPredicted RBP10.68□□□□□ -0.7
CLCN3-206ENST00000507875 HECW1Q76N89 1606 aa10.67□□□□□ -0.7
CLCN3-206ENST00000507875 AEBP1Q8IUX7 1158 aa10.67□□□□□ -0.7
CLCN3-206ENST00000507875 PCF11O94913 1555 aaKnown RBP10.67□□□□□ -0.7
CLCN3-206ENST00000507875 ZNF777Q9ULD5 760 aaPredicted RBP10.66□□□□□ -0.7
CLCN3-206ENST00000507875 TRAK2O60296 914 aa10.66□□□□□ -0.7
CLCN3-206ENST00000507875 BCL11AQ9H165 835 aa10.66□□□□□ -0.7
CLCN3-206ENST00000507875 GPR37O15354 613 aa10.65□□□□□ -0.7
CLCN3-206ENST00000507875 RAD21O60216 631 aa10.65□□□□□ -0.7
CLCN3-206ENST00000507875 PRR29P0C7W0 189 aa10.65□□□□□ -0.7
CLCN3-206ENST00000507875 ERCC6L2Q5T890 1561 aa10.65□□□□□ -0.7
CLCN3-206ENST00000507875 PSEN1P49768 467 aa10.65□□□□□ -0.7
CLCN3-206ENST00000507875 FHOD3Q2V2M9 1422 aa10.65□□□□□ -0.7
CLCN3-206ENST00000507875 CCDC18Q5T9S5 1454 aa10.65□□□□□ -0.71
CLCN3-206ENST00000507875 TIAM1Q13009 1591 aa10.65□□□□□ -0.71
CLCN3-206ENST00000507875 RAPGEF6Q8TEU7 1601 aa10.63□□□□□ -0.71
CLCN3-206ENST00000507875 PARP9Q8IXQ6 854 aa10.63□□□□□ -0.71
CLCN3-206ENST00000507875 FOXD4L5Q5VV16 416 aaPredicted RBP10.63□□□□□ -0.71
CLCN3-206ENST00000507875 FOXD4L4Q8WXT5 416 aaPredicted RBP10.63□□□□□ -0.71
CLCN3-206ENST00000507875 MTMR7Q9Y216 660 aa10.63□□□□□ -0.71
CLCN3-206ENST00000507875 ZNF467Q7Z7K2 595 aaPredicted RBP10.62□□□□□ -0.71
CLCN3-206ENST00000507875 CABP2Q9NPB3 220 aa10.62□□□□□ -0.71
CLCN3-206ENST00000507875 DDX27Q96GQ7 796 aaKnown RBP10.62□□□□□ -0.71
CLCN3-206ENST00000507875 POM121Q96HA1 1249 aa10.62□□□□□ -0.71
CLCN3-206ENST00000507875 CRISPLD2Q9H0B8 497 aa10.61□□□□□ -0.71
CLCN3-206ENST00000507875 LRRIQ1Q96JM4 1722 aa10.61□□□□□ -0.71
CLCN3-206ENST00000507875 MFSD10Q14728 455 aa10.6□□□□□ -0.71
CLCN3-206ENST00000507875 ABCA8O94911 1581 aa10.6□□□□□ -0.71
CLCN3-206ENST00000507875 MS4A4AQ96JQ5 239 aa10.6□□□□□ -0.71
CLCN3-206ENST00000507875 RGS22Q8NE09 1264 aa10.59□□□□□ -0.71
CLCN3-206ENST00000507875 CAMK2BQ13554 666 aa10.58□□□□□ -0.72
CLCN3-206ENST00000507875 CCDC102AQ96A19 550 aa10.58□□□□□ -0.72
CLCN3-206ENST00000507875 FECHP22830 423 aa10.58□□□□□ -0.72
CLCN3-206ENST00000507875 ARIH1Q9Y4X5 557 aaPredicted RBP10.58□□□□□ -0.72
CLCN3-206ENST00000507875 FLIIQ13045 1269 aa10.57□□□□□ -0.72
CLCN3-206ENST00000507875 SPDYE1Q8NFV5 336 aaPredicted RBP10.57□□□□□ -0.72
CLCN3-206ENST00000507875 EHBP1L1Q8N3D4 1523 aa10.57□□□□□ -0.72
CLCN3-206ENST00000507875 DPYSL4O14531 572 aa10.56□□□□□ -0.72
CLCN3-206ENST00000507875 LRRC9Q6ZRR7 1453 aa10.56□□□□□ -0.72
CLCN3-206ENST00000507875 PTPRGP23470 1445 aa10.56□□□□□ -0.72
CLCN3-206ENST00000507875 SUPT6HQ7KZ85 1726 aaKnown RBP10.55□□□□□ -0.72
CLCN3-206ENST00000507875 UHRF1BP1LA0JNW5 1464 aa10.55□□□□□ -0.72
CLCN3-206ENST00000507875 EPRSP07814 1512 aaKnown RBP10.55□□□□□ -0.72
CLCN3-206ENST00000507875 MCM6Q14566 821 aa10.55□□□□□ -0.72
CLCN3-206ENST00000507875 A6NJR5 290 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 PDE4AP27815 886 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 NLRP6P59044 892 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 IRF5Q13568 498 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 RETREG2Q8NC44 543 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 ADCY10Q96PN6 1610 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 DDRGK1Q96HY6 314 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 EMILIN3Q9NT22 766 aa10.53□□□□□ -0.72
CLCN3-206ENST00000507875 IFNL1Q8IU54 200 aa10.52□□□□□ -0.72
CLCN3-206ENST00000507875 NUP153P49790 1475 aaKnown RBP10.52□□□□□ -0.72
CLCN3-206ENST00000507875 ABCC2Q92887 1545 aa10.52□□□□□ -0.73
CLCN3-206ENST00000507875 CHADLQ6NUI6 762 aa10.51□□□□□ -0.73
CLCN3-206ENST00000507875 REPIN1Q9BWE0 567 aaKnown RBP10.51□□□□□ -0.73
CLCN3-206ENST00000507875 UACAQ9BZF9 1416 aa10.51□□□□□ -0.73
CLCN3-206ENST00000507875 MS4A1P11836 297 aa10.5□□□□□ -0.73
CLCN3-206ENST00000507875 MAPKBP1O60336 1514 aa10.5□□□□□ -0.73
CLCN3-206ENST00000507875 RBM25P49756 843 aaKnown RBP10.5□□□□□ -0.73
CLCN3-206ENST00000507875 GZF1Q9H116 711 aaPredicted RBP10.5□□□□□ -0.73
CLCN3-206ENST00000507875 TRAIPQ9BWF2 469 aa10.49□□□□□ -0.73
CLCN3-206ENST00000507875 CDK11AQ9UQ88 783 aaPredicted RBP10.49□□□□□ -0.73
CLCN3-206ENST00000507875 FAM69CQ0P6D2 419 aa10.48□□□□□ -0.73
CLCN3-206ENST00000507875 PLB1Q6P1J6 1458 aa10.48□□□□□ -0.73
CLCN3-206ENST00000507875 ITSN2Q9NZM3 1697 aa10.47□□□□□ -0.73
CLCN3-206ENST00000507875 ABCC10Q5T3U5 1492 aa10.47□□□□□ -0.73
CLCN3-206ENST00000507875 FNBP4Q8N3X1 1017 aaPredicted RBP10.47□□□□□ -0.73
CLCN3-206ENST00000507875 CCDC61Q9Y6R9 512 aa10.47□□□□□ -0.73
CLCN3-206ENST00000507875 RRBP1Q9P2E9 1410 aaKnown RBP10.47□□□□□ -0.73
CLCN3-206ENST00000507875 IRF6O14896 467 aa10.47□□□□□ -0.73
CLCN3-206ENST00000507875 MTUS2Q5JR59 1369 aa10.47□□□□□ -0.73
CLCN3-206ENST00000507875 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.47□□□□□ -0.73
CLCN3-206ENST00000507875 MFAP1P55081 439 aaKnown RBP10.46□□□□□ -0.74
CLCN3-206ENST00000507875 TTLL12Q14166 644 aaPredicted RBP10.46□□□□□ -0.74
CLCN3-206ENST00000507875 AMHR2Q16671 573 aa10.46□□□□□ -0.74
CLCN3-206ENST00000507875 PROSER2Q86WR7 435 aaPredicted RBP10.46□□□□□ -0.74
CLCN3-206ENST00000507875 CDK13Q14004 1512 aaKnown RBP10.45□□□□□ -0.74
CLCN3-206ENST00000507875 KDM5BQ9UGL1 1544 aa10.45□□□□□ -0.74
CLCN3-206ENST00000507875 TROQ12816 1431 aaPredicted RBP10.45□□□□□ -0.74
CLCN3-206ENST00000507875 ZCCHC11Q5TAX3 1644 aaKnown RBP10.45□□□□□ -0.74
CLCN3-206ENST00000507875 ATP10BO94823 1461 aa10.45□□□□□ -0.74
CLCN3-206ENST00000507875 KANK4Q5T7N3 995 aaPredicted RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms