RNA–Protein interactions for RNA: ENST00000507597.5

USP53-203, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 3

Gene USP53, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-203ENST00000507597 BCORL1Q5H9F3 1711 aa29.93■■■□□ 2.38
USP53-203ENST00000507597 GCC2Q8IWJ2 1684 aa29.91■■■□□ 2.38
USP53-203ENST00000507597 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.89■■■□□ 2.38
USP53-203ENST00000507597 WASHC2CQ9Y4E1 1318 aa29.89■■■□□ 2.38
USP53-203ENST00000507597 FAM135AQ9P2D6 1515 aa29.88■■■□□ 2.37
USP53-203ENST00000507597 HRCP23327 699 aa29.88■■■□□ 2.37
USP53-203ENST00000507597 CNTLNQ9NXG0 1405 aa29.88■■■□□ 2.37
USP53-203ENST00000507597 RNF17Q9BXT8 1623 aaKnown RBP29.85■■■□□ 2.37
USP53-203ENST00000507597 SIGLEC1Q9BZZ2 1709 aa29.85■■■□□ 2.37
USP53-203ENST00000507597 TRIM52Q96A61 297 aa29.83■■■□□ 2.37
USP53-203ENST00000507597 NUP155O75694 1391 aa29.8■■■□□ 2.36
USP53-203ENST00000507597 DEPDC5O75140 1603 aa29.79■■■□□ 2.36
USP53-203ENST00000507597 PCGF6Q9BYE7 350 aa29.79■■■□□ 2.36
USP53-203ENST00000507597 PRDM15P57071 1507 aaPredicted RBP29.79■■■□□ 2.36
USP53-203ENST00000507597 RAB3GAP2Q9H2M9 1393 aa29.78■■■□□ 2.36
USP53-203ENST00000507597 KDM5DQ9BY66 1539 aa29.78■■■□□ 2.36
USP53-203ENST00000507597 ADAMTSL3P82987 1691 aa29.78■■■□□ 2.36
USP53-203ENST00000507597 UNC13BO14795 1591 aa29.76■■■□□ 2.35
USP53-203ENST00000507597 ZC3H13Q5T200 1668 aaKnown RBP29.74■■■□□ 2.35
USP53-203ENST00000507597 FER1L4A9Z1Z3 1794 aa29.73■■■□□ 2.35
USP53-203ENST00000507597 KDM4FA0A1W2PPD8 638 aa29.72■■■□□ 2.35
USP53-203ENST00000507597 MROH1Q8NDA8 1641 aa29.71■■■□□ 2.35
USP53-203ENST00000507597 MADDQ8WXG6 1647 aa29.71■■■□□ 2.35
USP53-203ENST00000507597 ZMYM3Q14202 1370 aa29.7■■■□□ 2.35
USP53-203ENST00000507597 ABCC3O15438 1527 aa29.69■■■□□ 2.34
USP53-203ENST00000507597 LMTK2Q8IWU2 1503 aa29.69■■■□□ 2.34
USP53-203ENST00000507597 VWDEQ8N2E2 1590 aa29.68■■■□□ 2.34
USP53-203ENST00000507597 SLC4A1APQ9BWU0 796 aaKnown RBP29.67■■■□□ 2.34
USP53-203ENST00000507597 MROH2AA6NES4 1674 aa29.66■■■□□ 2.34
USP53-203ENST00000507597 CLTCQ00610 1675 aaKnown RBP29.66■■■□□ 2.34
USP53-203ENST00000507597 IQGAP3Q86VI3 1631 aa29.65■■■□□ 2.34
USP53-203ENST00000507597 RIMS1Q86UR5 1692 aaKnown RBP29.64■■■□□ 2.34
USP53-203ENST00000507597 ARHGAP31Q2M1Z3 1444 aa29.63■■■□□ 2.33
USP53-203ENST00000507597 PTPRMP28827 1452 aa29.62■■■□□ 2.33
USP53-203ENST00000507597 MPHOSPH9Q99550 1183 aa29.59■■■□□ 2.33
USP53-203ENST00000507597 RPRD2Q5VT52 1461 aaKnown RBP29.59■■■□□ 2.33
USP53-203ENST00000507597 CEP152O94986 1710 aa29.59■■■□□ 2.33
USP53-203ENST00000507597 TET3O43151 1660 aa29.58■■■□□ 2.33
USP53-203ENST00000507597 PZPP20742 1482 aa29.58■■■□□ 2.33
USP53-203ENST00000507597 PLPPR3Q6T4P5 718 aa29.58■■■□□ 2.33
USP53-203ENST00000507597 CAMSAP1Q5T5Y3 1602 aa29.57■■■□□ 2.32
USP53-203ENST00000507597 EFCAB6Q5THR3 1501 aa29.55■■■□□ 2.32
USP53-203ENST00000507597 CEBPAP49715 358 aaPredicted RBP29.55■■■□□ 2.32
USP53-203ENST00000507597 PKD2Q13563 968 aa29.55■■■□□ 2.32
USP53-203ENST00000507597 NPATQ14207 1427 aa29.54■■■□□ 2.32
USP53-203ENST00000507597 C3P01024 1663 aa29.51■■■□□ 2.31
USP53-203ENST00000507597 FBXO31Q5XUX0 539 aaPredicted RBP29.47■■■□□ 2.31
USP53-203ENST00000507597 TNRQ92752 1358 aa29.46■■■□□ 2.31
USP53-203ENST00000507597 ERVK-7P63135 1459 aa29.45■■■□□ 2.31
USP53-203ENST00000507597 SLC52A1Q9NWF4 448 aa29.45■■■□□ 2.31
USP53-203ENST00000507597 E9PCH4 1651 aa29.42■■■□□ 2.3
USP53-203ENST00000507597 SETD1BQ9UPS6 1966 aaKnown RBP29.42■■■□□ 2.3
USP53-203ENST00000507597 SPATA31D1Q6ZQQ2 1576 aa29.42■■■□□ 2.3
USP53-203ENST00000507597 NOS1P29475 1434 aa29.41■■■□□ 2.3
USP53-203ENST00000507597 PREX1Q8TCU6 1659 aa29.39■■■□□ 2.3
USP53-203ENST00000507597 UHRF1BP1Q6BDS2 1440 aa29.37■■■□□ 2.29
USP53-203ENST00000507597 NLRP1Q9C000 1473 aa29.37■■■□□ 2.29
USP53-203ENST00000507597 PTPRTO14522 1441 aa29.37■■■□□ 2.29
USP53-203ENST00000507597 STAG3Q9UJ98 1225 aa29.35■■■□□ 2.29
USP53-203ENST00000507597 CFAP65Q6ZU64 1925 aaKnown RBP29.34■■■□□ 2.29
USP53-203ENST00000507597 FOXD1Q16676 465 aa29.34■■■□□ 2.29
USP53-203ENST00000507597 IDI1Q13907 227 aa29.3■■■□□ 2.28
USP53-203ENST00000507597 SPHKAPQ2M3C7 1700 aa29.3■■■□□ 2.28
USP53-203ENST00000507597 TRPM2O94759 1503 aa29.3■■■□□ 2.28
USP53-203ENST00000507597 CCDC144AA2RUR9 1427 aa29.29■■■□□ 2.28
USP53-203ENST00000507597 DHX57Q6P158 1386 aaKnown RBP29.29■■■□□ 2.28
USP53-203ENST00000507597 THEMISQ8N1K5 641 aaPredicted RBP29.28■■■□□ 2.28
USP53-203ENST00000507597 A2ML1A8K2U0 1454 aa29.27■■■□□ 2.28
USP53-203ENST00000507597 ANKRD30BQ9BXX2 1392 aa29.26■■■□□ 2.27
USP53-203ENST00000507597 CHGAP10645 457 aaKnown RBP29.25■■■□□ 2.27
USP53-203ENST00000507597 SYNMO15061 1565 aa29.25■■■□□ 2.27
USP53-203ENST00000507597 MYO3AQ8NEV4 1616 aa29.23■■■□□ 2.27
USP53-203ENST00000507597 HDGFP51858 240 aaKnown RBP29.23■■■□□ 2.27
USP53-203ENST00000507597 PLA2R1Q13018 1463 aa29.23■■■□□ 2.27
USP53-203ENST00000507597 CLSPNQ9HAW4 1339 aa29.2■■■□□ 2.27
USP53-203ENST00000507597 UGGT1Q9NYU2 1555 aa29.2■■■□□ 2.26
USP53-203ENST00000507597 CEP170BQ9Y4F5 1589 aaPredicted RBP29.2■■■□□ 2.26
USP53-203ENST00000507597 CCER1Q8TC90 406 aaPredicted RBP29.19■■■□□ 2.26
USP53-203ENST00000507597 PIK3C2BO00750 1634 aa29.18■■■□□ 2.26
USP53-203ENST00000507597 ZNF142P52746 1687 aaPredicted RBP29.16■■■□□ 2.26
USP53-203ENST00000507597 KDM5AP29375 1690 aaKnown RBP29.15■■■□□ 2.26
USP53-203ENST00000507597 ZNF326Q5BKZ1 582 aaKnown RBP29.14■■■□□ 2.26
USP53-203ENST00000507597 EID1Q9Y6B2 187 aa29.13■■■□□ 2.25
USP53-203ENST00000507597 ADGRB3O60242 1522 aa29.13■■■□□ 2.25
USP53-203ENST00000507597 CLTCL1P53675 1640 aa29.12■■■□□ 2.25
USP53-203ENST00000507597 LMTK3Q96Q04 1460 aa29.11■■■□□ 2.25
USP53-203ENST00000507597 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.11■■■□□ 2.25
USP53-203ENST00000507597 KIF1BO60333 1816 aa29.1■■■□□ 2.25
USP53-203ENST00000507597 RPGRIP1LQ68CZ1 1315 aa29.1■■■□□ 2.25
USP53-203ENST00000507597 ANKLE2Q86XL3 938 aa29.09■■■□□ 2.25
USP53-203ENST00000507597 UBR1Q8IWV7 1749 aa29.07■■■□□ 2.24
USP53-203ENST00000507597 TMEM131LA2VDJ0 1609 aa29.06■■■□□ 2.24
USP53-203ENST00000507597 NEURL4Q96JN8 1562 aa29.06■■■□□ 2.24
USP53-203ENST00000507597 TMEM2Q9UHN6 1383 aa29.06■■■□□ 2.24
USP53-203ENST00000507597 NEUROD1Q13562 356 aa29.05■■■□□ 2.24
USP53-203ENST00000507597 RGL3Q3MIN7 710 aa29.05■■■□□ 2.24
USP53-203ENST00000507597 STAC3Q96MF2 364 aa29.05■■■□□ 2.24
USP53-203ENST00000507597 PPP1R15AO75807 674 aaPredicted RBP29.03■■■□□ 2.24
USP53-203ENST00000507597 HSPA2P54652 639 aa29.03■■■□□ 2.24
USP53-203ENST00000507597 TXNDC2Q86VQ3 553 aa29.02■■■□□ 2.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms