RNA–Protein interactions for RNA: ENST00000507533.1

DDR1-260, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 2

Gene DDR1, Length 545 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-260ENST00000507533 NEURL4Q96JN8 1562 aa22.72■■□□□ 1.23
DDR1-260ENST00000507533 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.68■■□□□ 1.22
DDR1-260ENST00000507533 THEMISQ8N1K5 641 aaPredicted RBP22.68■■□□□ 1.22
DDR1-260ENST00000507533 ADGBQ8N7X0 1667 aa22.68■■□□□ 1.22
DDR1-260ENST00000507533 DHX29Q7Z478 1369 aaKnown RBP22.67■■□□□ 1.22
DDR1-260ENST00000507533 ZNF644Q9H582 1327 aaPredicted RBP22.67■■□□□ 1.22
DDR1-260ENST00000507533 SENP3Q9H4L4 574 aaPredicted RBP22.67■■□□□ 1.22
DDR1-260ENST00000507533 POLR1AO95602 1720 aaPredicted RBP22.67■■□□□ 1.22
DDR1-260ENST00000507533 VWDEQ8N2E2 1590 aa22.66■■□□□ 1.22
DDR1-260ENST00000507533 KIF3BO15066 747 aa22.65■■□□□ 1.22
DDR1-260ENST00000507533 ALKQ9UM73 1620 aa22.64■■□□□ 1.21
DDR1-260ENST00000507533 PZPP20742 1482 aa22.63■■□□□ 1.21
DDR1-260ENST00000507533 RTEL1-TNFRSF6BF6WH68 1400 aa22.63■■□□□ 1.21
DDR1-260ENST00000507533 NPHP4O75161 1426 aaPredicted RBP22.63■■□□□ 1.21
DDR1-260ENST00000507533 WASHC2CQ9Y4E1 1318 aa22.62■■□□□ 1.21
DDR1-260ENST00000507533 MBD5Q9P267 1494 aa22.62■■□□□ 1.21
DDR1-260ENST00000507533 MTUS2Q5JR59 1369 aa22.62■■□□□ 1.21
DDR1-260ENST00000507533 MIA2Q96PC5 1412 aa22.61■■□□□ 1.21
DDR1-260ENST00000507533 MED14O60244 1454 aa22.6■■□□□ 1.21
DDR1-260ENST00000507533 KDM5DQ9BY66 1539 aa22.58■■□□□ 1.21
DDR1-260ENST00000507533 NLRP1Q9C000 1473 aa22.58■■□□□ 1.2
DDR1-260ENST00000507533 FAM135AQ9P2D6 1515 aa22.57■■□□□ 1.2
DDR1-260ENST00000507533 CHIC1Q5VXU3 224 aa22.57■■□□□ 1.2
DDR1-260ENST00000507533 UGGT1Q9NYU2 1555 aa22.57■■□□□ 1.2
DDR1-260ENST00000507533 DEPDC5O75140 1603 aa22.55■■□□□ 1.2
DDR1-260ENST00000507533 LRRC7Q96NW7 1537 aa22.55■■□□□ 1.2
DDR1-260ENST00000507533 RGS17Q9UGC6 210 aaPredicted RBP22.54■■□□□ 1.2
DDR1-260ENST00000507533 TIAM1Q13009 1591 aa22.52■■□□□ 1.2
DDR1-260ENST00000507533 IQGAP1P46940 1657 aa22.5■■□□□ 1.19
DDR1-260ENST00000507533 RNF17Q9BXT8 1623 aaKnown RBP22.48■■□□□ 1.19
DDR1-260ENST00000507533 CCDC141Q6ZP82 1450 aa22.47■■□□□ 1.19
DDR1-260ENST00000507533 RSPH4AQ5TD94 716 aa22.47■■□□□ 1.19
DDR1-260ENST00000507533 STRCP1A6NGW2 1772 aa22.47■■□□□ 1.19
DDR1-260ENST00000507533 CEP162Q5TB80 1403 aa22.45■■□□□ 1.18
DDR1-260ENST00000507533 SYNMO15061 1565 aa22.45■■□□□ 1.18
DDR1-260ENST00000507533 EHBP1L1Q8N3D4 1523 aa22.43■■□□□ 1.18
DDR1-260ENST00000507533 TSPY4P0CV99 314 aa22.41■■□□□ 1.18
DDR1-260ENST00000507533 TSPY10P0CW01 314 aa22.41■■□□□ 1.18
DDR1-260ENST00000507533 POTEAQ6S8J7 498 aa22.4■■□□□ 1.18
DDR1-260ENST00000507533 CAMSAP2Q08AD1 1489 aa22.4■■□□□ 1.18
DDR1-260ENST00000507533 ERVK-7P63135 1459 aa22.37■■□□□ 1.17
DDR1-260ENST00000507533 ABCC3O15438 1527 aa22.36■■□□□ 1.17
DDR1-260ENST00000507533 SCAF11Q99590 1463 aaKnown RBP22.36■■□□□ 1.17
DDR1-260ENST00000507533 LTKP29376 864 aa22.36■■□□□ 1.17
DDR1-260ENST00000507533 TXNDC2Q86VQ3 553 aa22.36■■□□□ 1.17
DDR1-260ENST00000507533 ZC3H13Q5T200 1668 aaKnown RBP22.35■■□□□ 1.17
DDR1-260ENST00000507533 FAM135BQ49AJ0 1406 aa22.34■■□□□ 1.17
DDR1-260ENST00000507533 NCOA2Q15596 1464 aa22.33■■□□□ 1.16
DDR1-260ENST00000507533 ARHGEF5Q12774 1597 aa22.3■■□□□ 1.16
DDR1-260ENST00000507533 EID1Q9Y6B2 187 aa22.3■■□□□ 1.16
DDR1-260ENST00000507533 UBR1Q8IWV7 1749 aa22.28■■□□□ 1.16
DDR1-260ENST00000507533 ARHGAP23Q9P227 1491 aa22.28■■□□□ 1.16
DDR1-260ENST00000507533 SLIT1O75093 1534 aa22.26■■□□□ 1.15
DDR1-260ENST00000507533 TMEM94Q12767 1356 aa22.25■■□□□ 1.15
DDR1-260ENST00000507533 XIRP1Q702N8 1843 aaKnown RBP22.25■■□□□ 1.15
DDR1-260ENST00000507533 MROH1Q8NDA8 1641 aa22.21■■□□□ 1.15
DDR1-260ENST00000507533 EIF2AK4Q9P2K8 1649 aaKnown RBP22.21■■□□□ 1.15
DDR1-260ENST00000507533 KCNA6P17658 529 aa22.21■■□□□ 1.15
DDR1-260ENST00000507533 PROSER2Q86WR7 435 aaPredicted RBP22.21■■□□□ 1.15
DDR1-260ENST00000507533 RBM33Q96EV2 1170 aaKnown RBP22.2■■□□□ 1.14
DDR1-260ENST00000507533 STAG3Q9UJ98 1225 aa22.2■■□□□ 1.14
DDR1-260ENST00000507533 TMEM2Q9UHN6 1383 aa22.2■■□□□ 1.14
DDR1-260ENST00000507533 MAST1Q9Y2H9 1570 aa22.2■■□□□ 1.14
DDR1-260ENST00000507533 CEP152O94986 1710 aa22.18■■□□□ 1.14
DDR1-260ENST00000507533 ARHGAP31Q2M1Z3 1444 aa22.18■■□□□ 1.14
DDR1-260ENST00000507533 CFAP65Q6ZU64 1925 aaKnown RBP22.18■■□□□ 1.14
DDR1-260ENST00000507533 ROBO1Q9Y6N7 1651 aa22.17■■□□□ 1.14
DDR1-260ENST00000507533 SLC26A8Q96RN1 970 aa22.16■■□□□ 1.14
DDR1-260ENST00000507533 LRRC9Q6ZRR7 1453 aa22.15■■□□□ 1.14
DDR1-260ENST00000507533 MAP3K1Q13233 1512 aa22.14■■□□□ 1.13
DDR1-260ENST00000507533 DUOX2Q9NRD8 1548 aa22.13■■□□□ 1.13
DDR1-260ENST00000507533 SETD1AO15047 1707 aaKnown RBP22.13■■□□□ 1.13
DDR1-260ENST00000507533 JCADQ9P266 1359 aa22.12■■□□□ 1.13
DDR1-260ENST00000507533 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.12■■□□□ 1.13
DDR1-260ENST00000507533 SLAIN2Q9P270 581 aa22.12■■□□□ 1.13
DDR1-260ENST00000507533 PIK3C2BO00750 1634 aa22.12■■□□□ 1.13
DDR1-260ENST00000507533 IDI1Q13907 227 aa22.11■■□□□ 1.13
DDR1-260ENST00000507533 PRDM15P57071 1507 aaPredicted RBP22.1■■□□□ 1.13
DDR1-260ENST00000507533 MSH6P52701 1360 aa22.1■■□□□ 1.13
DDR1-260ENST00000507533 UPF1Q92900 1129 aaKnown RBP eCLIP22.09■■□□□ 1.13
DDR1-260ENST00000507533 EFCAB6Q5THR3 1501 aa22.08■■□□□ 1.13
DDR1-260ENST00000507533 KIF15Q9NS87 1388 aa22.08■■□□□ 1.12
DDR1-260ENST00000507533 TET3O43151 1660 aa22.07■■□□□ 1.12
DDR1-260ENST00000507533 BCANQ96GW7 911 aa22.07■■□□□ 1.12
DDR1-260ENST00000507533 RRP7BPQ9NSQ0 103 aa22.07■■□□□ 1.12
DDR1-260ENST00000507533 MYOM3Q5VTT5 1437 aa22.06■■□□□ 1.12
DDR1-260ENST00000507533 NKTRP30414 1462 aaKnown RBP22.06■■□□□ 1.12
DDR1-260ENST00000507533 KANK1Q14678 1352 aa22.05■■□□□ 1.12
DDR1-260ENST00000507533 PHLPP1O60346 1717 aa22.05■■□□□ 1.12
DDR1-260ENST00000507533 ERBINQ96RT1 1412 aa22.05■■□□□ 1.12
DDR1-260ENST00000507533 MEX3CQ5U5Q3 659 aaKnown RBP22.04■■□□□ 1.12
DDR1-260ENST00000507533 TRIM52Q96A61 297 aa22.04■■□□□ 1.12
DDR1-260ENST00000507533 ZNF772Q68DY9 489 aaPredicted RBP22.03■■□□□ 1.12
DDR1-260ENST00000507533 NWD1Q149M9 1564 aa22.01■■□□□ 1.11
DDR1-260ENST00000507533 SPATA31A6Q5VVP1 1343 aa22.01■■□□□ 1.11
DDR1-260ENST00000507533 KDM5AP29375 1690 aaKnown RBP22.01■■□□□ 1.11
DDR1-260ENST00000507533 KANK4Q5T7N3 995 aaPredicted RBP22■■□□□ 1.11
DDR1-260ENST00000507533 LRP6O75581 1613 aa21.98■■□□□ 1.11
DDR1-260ENST00000507533 ABCC5O15440 1437 aa21.97■■□□□ 1.11
DDR1-260ENST00000507533 FGD6Q6ZV73 1430 aa21.97■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms