RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 DEPDC5O75140 1603 aa12.8□□□□□ -0.36
PDGFC-205ENST00000506880 ADRA2BP18089 450 aa12.8□□□□□ -0.36
PDGFC-205ENST00000506880 GCC2Q8IWJ2 1684 aa12.8□□□□□ -0.36
PDGFC-205ENST00000506880 HFM1A2PYH4 1435 aa12.79□□□□□ -0.36
PDGFC-205ENST00000506880 FER1L4A9Z1Z3 1794 aa12.79□□□□□ -0.36
PDGFC-205ENST00000506880 ANKRD50Q9ULJ7 1429 aa12.79□□□□□ -0.36
PDGFC-205ENST00000506880 PRDM15P57071 1507 aaPredicted RBP12.78□□□□□ -0.36
PDGFC-205ENST00000506880 HRCP23327 699 aa12.77□□□□□ -0.37
PDGFC-205ENST00000506880 ARID4BQ4LE39 1312 aaPredicted RBP12.76□□□□□ -0.37
PDGFC-205ENST00000506880 KANK1Q14678 1352 aa12.76□□□□□ -0.37
PDGFC-205ENST00000506880 LMTK2Q8IWU2 1503 aa12.75□□□□□ -0.37
PDGFC-205ENST00000506880 SIGLEC1Q9BZZ2 1709 aa12.74□□□□□ -0.37
PDGFC-205ENST00000506880 UNC13BO14795 1591 aa12.74□□□□□ -0.37
PDGFC-205ENST00000506880 VWDEQ8N2E2 1590 aa12.74□□□□□ -0.37
PDGFC-205ENST00000506880 PTPRKQ15262 1439 aa12.74□□□□□ -0.37
PDGFC-205ENST00000506880 ESF1Q9H501 851 aaKnown RBP12.74□□□□□ -0.37
PDGFC-205ENST00000506880 NPATQ14207 1427 aa12.73□□□□□ -0.37
PDGFC-205ENST00000506880 ARHGAP31Q2M1Z3 1444 aa12.73□□□□□ -0.37
PDGFC-205ENST00000506880 RPRD2Q5VT52 1461 aaKnown RBP12.72□□□□□ -0.37
PDGFC-205ENST00000506880 NAIPQ13075 1403 aa12.72□□□□□ -0.37
PDGFC-205ENST00000506880 KIF3BO15066 747 aa12.72□□□□□ -0.37
PDGFC-205ENST00000506880 MADDQ8WXG6 1647 aa12.72□□□□□ -0.37
PDGFC-205ENST00000506880 MROH1Q8NDA8 1641 aa12.71□□□□□ -0.37
PDGFC-205ENST00000506880 RRP7BPQ9NSQ0 103 aa12.71□□□□□ -0.37
PDGFC-205ENST00000506880 PPARGC1BQ86YN6 1023 aaKnown RBP12.7□□□□□ -0.38
PDGFC-205ENST00000506880 IQGAP3Q86VI3 1631 aa12.7□□□□□ -0.38
PDGFC-205ENST00000506880 PTPRMP28827 1452 aa12.69□□□□□ -0.38
PDGFC-205ENST00000506880 TET3O43151 1660 aa12.69□□□□□ -0.38
PDGFC-205ENST00000506880 ABCC3O15438 1527 aa12.68□□□□□ -0.38
PDGFC-205ENST00000506880 RIMS1Q86UR5 1692 aaKnown RBP12.68□□□□□ -0.38
PDGFC-205ENST00000506880 PZPP20742 1482 aa12.68□□□□□ -0.38
PDGFC-205ENST00000506880 KDM4FA0A1W2PPD8 638 aa12.68□□□□□ -0.38
PDGFC-205ENST00000506880 CHIC2Q9UKJ5 165 aa12.68□□□□□ -0.38
PDGFC-205ENST00000506880 WASHC2CQ9Y4E1 1318 aa12.67□□□□□ -0.38
PDGFC-205ENST00000506880 C3P01024 1663 aa12.67□□□□□ -0.38
PDGFC-205ENST00000506880 CLTCQ00610 1675 aaKnown RBP12.67□□□□□ -0.38
PDGFC-205ENST00000506880 SETD5Q9C0A6 1442 aa12.66□□□□□ -0.38
PDGFC-205ENST00000506880 TRIM26Q12899 539 aaPredicted RBP12.66□□□□□ -0.38
PDGFC-205ENST00000506880 ZMYM3Q14202 1370 aa12.66□□□□□ -0.38
PDGFC-205ENST00000506880 CAMSAP1Q5T5Y3 1602 aa12.66□□□□□ -0.38
PDGFC-205ENST00000506880 KDM5AP29375 1690 aaKnown RBP12.65□□□□□ -0.38
PDGFC-205ENST00000506880 GGT6Q6P531 493 aa12.65□□□□□ -0.38
PDGFC-205ENST00000506880 EFCAB6Q5THR3 1501 aa12.65□□□□□ -0.38
PDGFC-205ENST00000506880 NLRP1Q9C000 1473 aa12.63□□□□□ -0.39
PDGFC-205ENST00000506880 SPATA31D1Q6ZQQ2 1576 aa12.63□□□□□ -0.39
PDGFC-205ENST00000506880 PREX1Q8TCU6 1659 aa12.63□□□□□ -0.39
PDGFC-205ENST00000506880 CEP152O94986 1710 aa12.62□□□□□ -0.39
PDGFC-205ENST00000506880 ITGAEP38570 1179 aa12.61□□□□□ -0.39
PDGFC-205ENST00000506880 ZNF142P52746 1687 aaPredicted RBP12.61□□□□□ -0.39
PDGFC-205ENST00000506880 NUP155O75694 1391 aa12.6□□□□□ -0.39
PDGFC-205ENST00000506880 MLECQ14165 292 aa12.59□□□□□ -0.39
PDGFC-205ENST00000506880 NOS1P29475 1434 aa12.58□□□□□ -0.4
PDGFC-205ENST00000506880 UHRF1BP1Q6BDS2 1440 aa12.58□□□□□ -0.4
PDGFC-205ENST00000506880 SLC52A1Q9NWF4 448 aa12.58□□□□□ -0.4
PDGFC-205ENST00000506880 ERVK-7P63135 1459 aa12.58□□□□□ -0.4
PDGFC-205ENST00000506880 E9PCH4 1651 aa12.56□□□□□ -0.4
PDGFC-205ENST00000506880 NEURL4Q96JN8 1562 aa12.56□□□□□ -0.4
PDGFC-205ENST00000506880 TNRQ92752 1358 aa12.56□□□□□ -0.4
PDGFC-205ENST00000506880 RAB3GAP2Q9H2M9 1393 aa12.56□□□□□ -0.4
PDGFC-205ENST00000506880 PTPRTO14522 1441 aa12.55□□□□□ -0.4
PDGFC-205ENST00000506880 SPHKAPQ2M3C7 1700 aa12.54□□□□□ -0.4
PDGFC-205ENST00000506880 A2ML1A8K2U0 1454 aa12.54□□□□□ -0.4
PDGFC-205ENST00000506880 MYO3AQ8NEV4 1616 aa12.54□□□□□ -0.4
PDGFC-205ENST00000506880 PLA2R1Q13018 1463 aa12.53□□□□□ -0.4
PDGFC-205ENST00000506880 PIK3C2BO00750 1634 aa12.53□□□□□ -0.4
PDGFC-205ENST00000506880 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.53□□□□□ -0.4
PDGFC-205ENST00000506880 TRPM2O94759 1503 aa12.52□□□□□ -0.4
PDGFC-205ENST00000506880 CEP170BQ9Y4F5 1589 aaPredicted RBP12.52□□□□□ -0.4
PDGFC-205ENST00000506880 CFAP65Q6ZU64 1925 aaKnown RBP12.52□□□□□ -0.41
PDGFC-205ENST00000506880 SLC4A1APQ9BWU0 796 aaKnown RBP12.51□□□□□ -0.41
PDGFC-205ENST00000506880 LMTK3Q96Q04 1460 aa12.5□□□□□ -0.41
PDGFC-205ENST00000506880 HDGFP51858 240 aaKnown RBP12.49□□□□□ -0.41
PDGFC-205ENST00000506880 ILDR1Q86SU0 546 aaPredicted RBP12.49□□□□□ -0.41
PDGFC-205ENST00000506880 THEMISQ8N1K5 641 aaPredicted RBP12.49□□□□□ -0.41
PDGFC-205ENST00000506880 TRIM52Q96A61 297 aa12.49□□□□□ -0.41
PDGFC-205ENST00000506880 MPHOSPH9Q99550 1183 aa12.49□□□□□ -0.41
PDGFC-205ENST00000506880 SYNMO15061 1565 aa12.48□□□□□ -0.41
PDGFC-205ENST00000506880 UGGT1Q9NYU2 1555 aa12.48□□□□□ -0.41
PDGFC-205ENST00000506880 STAC3Q96MF2 364 aa12.48□□□□□ -0.41
PDGFC-205ENST00000506880 KIF1BO60333 1816 aa12.48□□□□□ -0.41
PDGFC-205ENST00000506880 DMRT2Q9Y5R5 561 aa12.47□□□□□ -0.41
PDGFC-205ENST00000506880 UBR1Q8IWV7 1749 aa12.47□□□□□ -0.41
PDGFC-205ENST00000506880 ADGRB3O60242 1522 aa12.47□□□□□ -0.41
PDGFC-205ENST00000506880 SLIT1O75093 1534 aa12.47□□□□□ -0.41
PDGFC-205ENST00000506880 PKD2Q13563 968 aa12.46□□□□□ -0.41
PDGFC-205ENST00000506880 CLSPNQ9HAW4 1339 aa12.45□□□□□ -0.42
PDGFC-205ENST00000506880 CEBPAP49715 358 aaPredicted RBP12.45□□□□□ -0.42
PDGFC-205ENST00000506880 ARHGAP23Q9P227 1491 aa12.45□□□□□ -0.42
PDGFC-205ENST00000506880 CCDC144AA2RUR9 1427 aa12.44□□□□□ -0.42
PDGFC-205ENST00000506880 TMEM131LA2VDJ0 1609 aa12.44□□□□□ -0.42
PDGFC-205ENST00000506880 RPGRIP1LQ68CZ1 1315 aa12.43□□□□□ -0.42
PDGFC-205ENST00000506880 POLR1AO95602 1720 aaPredicted RBP12.43□□□□□ -0.42
PDGFC-205ENST00000506880 MED14O60244 1454 aa12.43□□□□□ -0.42
PDGFC-205ENST00000506880 FBXO31Q5XUX0 539 aaPredicted RBP12.43□□□□□ -0.42
PDGFC-205ENST00000506880 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.43□□□□□ -0.42
PDGFC-205ENST00000506880 ZFYVE9O95405 1425 aa12.41□□□□□ -0.42
PDGFC-205ENST00000506880 IDI1Q13907 227 aa12.41□□□□□ -0.42
PDGFC-205ENST00000506880 ANKRD30BQ9BXX2 1392 aa12.41□□□□□ -0.42
PDGFC-205ENST00000506880 ANKLE2Q86XL3 938 aa12.4□□□□□ -0.42
PDGFC-205ENST00000506880 TMEM2Q9UHN6 1383 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms