RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 PLA2R1Q13018 1463 aa20.39■□□□□ 0.85
TCOF1-209ENST00000506630 PLXNC1O60486 1568 aa20.38■□□□□ 0.85
TCOF1-209ENST00000506630 PPP6R1Q9UPN7 881 aa20.38■□□□□ 0.85
TCOF1-209ENST00000506630 PTPRKQ15262 1439 aa20.36■□□□□ 0.85
TCOF1-209ENST00000506630 CROCC2H7BZ55 1655 aa20.35■□□□□ 0.85
TCOF1-209ENST00000506630 CLTCQ00610 1675 aaKnown RBP20.35■□□□□ 0.85
TCOF1-209ENST00000506630 FGD6Q6ZV73 1430 aa20.34■□□□□ 0.85
TCOF1-209ENST00000506630 CEP170BQ9Y4F5 1589 aaPredicted RBP20.34■□□□□ 0.85
TCOF1-209ENST00000506630 TCOF1Q13428 1488 aaKnown RBP20.33■□□□□ 0.85
TCOF1-209ENST00000506630 MYO3AQ8NEV4 1616 aa20.33■□□□□ 0.84
TCOF1-209ENST00000506630 RSPH4AQ5TD94 716 aa20.32■□□□□ 0.84
TCOF1-209ENST00000506630 ZNF142P52746 1687 aaPredicted RBP20.32■□□□□ 0.84
TCOF1-209ENST00000506630 RTEL1-TNFRSF6BF6WH68 1400 aa20.31■□□□□ 0.84
TCOF1-209ENST00000506630 MAST1Q9Y2H9 1570 aa20.3■□□□□ 0.84
TCOF1-209ENST00000506630 DNMT1P26358 1616 aaKnown RBP20.29■□□□□ 0.84
TCOF1-209ENST00000506630 A2ML1A8K2U0 1454 aa20.28■□□□□ 0.84
TCOF1-209ENST00000506630 SCAF1Q9H7N4 1312 aaKnown RBP20.27■□□□□ 0.84
TCOF1-209ENST00000506630 TSPY4P0CV99 314 aa20.27■□□□□ 0.84
TCOF1-209ENST00000506630 TSPY10P0CW01 314 aa20.27■□□□□ 0.84
TCOF1-209ENST00000506630 PPARGC1BQ86YN6 1023 aaKnown RBP20.27■□□□□ 0.84
TCOF1-209ENST00000506630 DHX29Q7Z478 1369 aaKnown RBP20.26■□□□□ 0.83
TCOF1-209ENST00000506630 TOM1O60784 492 aa20.25■□□□□ 0.83
TCOF1-209ENST00000506630 PIP4K2BP78356 416 aa20.23■□□□□ 0.83
TCOF1-209ENST00000506630 SHANK2Q9UPX8 1470 aa20.23■□□□□ 0.83
TCOF1-209ENST00000506630 TNRQ92752 1358 aa20.22■□□□□ 0.83
TCOF1-209ENST00000506630 DAPK1P53355 1430 aa20.22■□□□□ 0.83
TCOF1-209ENST00000506630 KIF3BO15066 747 aa20.22■□□□□ 0.83
TCOF1-209ENST00000506630 ABCC5O15440 1437 aa20.21■□□□□ 0.83
TCOF1-209ENST00000506630 FBXO31Q5XUX0 539 aaPredicted RBP20.21■□□□□ 0.83
TCOF1-209ENST00000506630 HSPA1LP34931 641 aa20.2■□□□□ 0.82
TCOF1-209ENST00000506630 FAM50AQ14320 339 aaKnown RBP20.2■□□□□ 0.82
TCOF1-209ENST00000506630 CPS1P31327 1500 aa20.19■□□□□ 0.82
TCOF1-209ENST00000506630 ANKLE2Q86XL3 938 aa20.19■□□□□ 0.82
TCOF1-209ENST00000506630 THEMISQ8N1K5 641 aaPredicted RBP20.19■□□□□ 0.82
TCOF1-209ENST00000506630 WASHC2CQ9Y4E1 1318 aa20.19■□□□□ 0.82
TCOF1-209ENST00000506630 EIF2AK4Q9P2K8 1649 aaKnown RBP20.16■□□□□ 0.82
TCOF1-209ENST00000506630 PZPP20742 1482 aa20.16■□□□□ 0.82
TCOF1-209ENST00000506630 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.15■□□□□ 0.82
TCOF1-209ENST00000506630 KDM5DQ9BY66 1539 aa20.14■□□□□ 0.81
TCOF1-209ENST00000506630 DUOX2Q9NRD8 1548 aa20.14■□□□□ 0.81
TCOF1-209ENST00000506630 FAM135AQ9P2D6 1515 aa20.14■□□□□ 0.81
TCOF1-209ENST00000506630 RNF17Q9BXT8 1623 aaKnown RBP20.13■□□□□ 0.81
TCOF1-209ENST00000506630 NEURL4Q96JN8 1562 aa20.12■□□□□ 0.81
TCOF1-209ENST00000506630 KIF15Q9NS87 1388 aa20.11■□□□□ 0.81
TCOF1-209ENST00000506630 POLR1AO95602 1720 aaPredicted RBP20.11■□□□□ 0.81
TCOF1-209ENST00000506630 CHIC2Q9UKJ5 165 aa20.11■□□□□ 0.81
TCOF1-209ENST00000506630 NLRP1Q9C000 1473 aa20.11■□□□□ 0.81
TCOF1-209ENST00000506630 MED1Q15648 1581 aaPredicted RBP20.1■□□□□ 0.81
TCOF1-209ENST00000506630 NPHP4O75161 1426 aaPredicted RBP20.09■□□□□ 0.81
TCOF1-209ENST00000506630 MROH1Q8NDA8 1641 aa20.09■□□□□ 0.81
TCOF1-209ENST00000506630 ANKRD30AQ9BXX3 1397 aa20.08■□□□□ 0.81
TCOF1-209ENST00000506630 ADGRL2O95490 1459 aa20.08■□□□□ 0.81
TCOF1-209ENST00000506630 RRP7BPQ9NSQ0 103 aa20.08■□□□□ 0.81
TCOF1-209ENST00000506630 UGGT1Q9NYU2 1555 aa20.08■□□□□ 0.8
TCOF1-209ENST00000506630 CEP152O94986 1710 aa20.07■□□□□ 0.8
TCOF1-209ENST00000506630 ZC3H13Q5T200 1668 aaKnown RBP20.07■□□□□ 0.8
TCOF1-209ENST00000506630 ERBINQ96RT1 1412 aa20.07■□□□□ 0.8
TCOF1-209ENST00000506630 MED14O60244 1454 aa20.06■□□□□ 0.8
TCOF1-209ENST00000506630 VWDEQ8N2E2 1590 aa20.05■□□□□ 0.8
TCOF1-209ENST00000506630 RRBP1Q9P2E9 1410 aaKnown RBP20.04■□□□□ 0.8
TCOF1-209ENST00000506630 ABCC3O15438 1527 aa20.03■□□□□ 0.8
TCOF1-209ENST00000506630 DEPDC5O75140 1603 aa20.03■□□□□ 0.8
TCOF1-209ENST00000506630 CFAP65Q6ZU64 1925 aaKnown RBP20.02■□□□□ 0.8
TCOF1-209ENST00000506630 ITGAEP38570 1179 aa20.02■□□□□ 0.8
TCOF1-209ENST00000506630 PRDM15P57071 1507 aaPredicted RBP20.01■□□□□ 0.79
TCOF1-209ENST00000506630 SENP3Q9H4L4 574 aaPredicted RBP19.99■□□□□ 0.79
TCOF1-209ENST00000506630 IQGAP1P46940 1657 aa19.97■□□□□ 0.79
TCOF1-209ENST00000506630 LRRC7Q96NW7 1537 aa19.96■□□□□ 0.79
TCOF1-209ENST00000506630 ROCK1Q13464 1354 aa19.95■□□□□ 0.79
TCOF1-209ENST00000506630 ALKQ9UM73 1620 aa19.95■□□□□ 0.78
TCOF1-209ENST00000506630 ANKRD50Q9ULJ7 1429 aa19.94■□□□□ 0.78
TCOF1-209ENST00000506630 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.94■□□□□ 0.782e-6■■■■□ 21.1
TCOF1-209ENST00000506630 ERVK-7P63135 1459 aa19.93■□□□□ 0.78
TCOF1-209ENST00000506630 GCC2Q8IWJ2 1684 aa19.92■□□□□ 0.78
TCOF1-209ENST00000506630 KANK1Q14678 1352 aa19.91■□□□□ 0.78
TCOF1-209ENST00000506630 UNC13BO14795 1591 aa19.91■□□□□ 0.78
TCOF1-209ENST00000506630 SYNMO15061 1565 aa19.91■□□□□ 0.78
TCOF1-209ENST00000506630 TXNDC2Q86VQ3 553 aa19.9■□□□□ 0.78
TCOF1-209ENST00000506630 SCAF11Q99590 1463 aaKnown RBP19.89■□□□□ 0.77
TCOF1-209ENST00000506630 EID1Q9Y6B2 187 aa19.89■□□□□ 0.77
TCOF1-209ENST00000506630 STRCP1A6NGW2 1772 aa19.87■□□□□ 0.77
TCOF1-209ENST00000506630 LTKP29376 864 aa19.86■□□□□ 0.77
TCOF1-209ENST00000506630 LMTK2Q8IWU2 1503 aa19.86■□□□□ 0.77
TCOF1-209ENST00000506630 UBR1Q8IWV7 1749 aa19.85■□□□□ 0.77
TCOF1-209ENST00000506630 TET3O43151 1660 aa19.84■□□□□ 0.77
TCOF1-209ENST00000506630 EFCAB6Q5THR3 1501 aa19.84■□□□□ 0.77
TCOF1-209ENST00000506630 ARHGAP31Q2M1Z3 1444 aa19.84■□□□□ 0.77
TCOF1-209ENST00000506630 STAG3Q9UJ98 1225 aa19.83■□□□□ 0.77
TCOF1-209ENST00000506630 ARHGAP23Q9P227 1491 aa19.83■□□□□ 0.76
TCOF1-209ENST00000506630 IQGAP3Q86VI3 1631 aa19.83■□□□□ 0.76
TCOF1-209ENST00000506630 SLIT1O75093 1534 aa19.82■□□□□ 0.76
TCOF1-209ENST00000506630 RGS17Q9UGC6 210 aaPredicted RBP19.8■□□□□ 0.76
TCOF1-209ENST00000506630 PIK3C2BO00750 1634 aa19.8■□□□□ 0.76
TCOF1-209ENST00000506630 NAIPQ13075 1403 aa19.79■□□□□ 0.76
TCOF1-209ENST00000506630 FAM135BQ49AJ0 1406 aa19.78■□□□□ 0.76
TCOF1-209ENST00000506630 TMEM2Q9UHN6 1383 aa19.78■□□□□ 0.76
TCOF1-209ENST00000506630 E9PCH4 1651 aa19.78■□□□□ 0.76
TCOF1-209ENST00000506630 HFM1A2PYH4 1435 aa19.77■□□□□ 0.76
TCOF1-209ENST00000506630 IDI1Q13907 227 aa19.76■□□□□ 0.75
TCOF1-209ENST00000506630 TMEM94Q12767 1356 aa19.75■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms