RNA–Protein interactions for RNA: ENST00000504489.3

PDLIM5-208, Transcript of PDZ and LIM domain 5, humanhuman

TSL 4 BASIC

Gene PDLIM5, Length 538 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-208ENST00000504489 PTPRKQ15262 1439 aa18.14■□□□□ 0.49
PDLIM5-208ENST00000504489 DUOX2Q9NRD8 1548 aa18.13■□□□□ 0.49
PDLIM5-208ENST00000504489 ARID4BQ4LE39 1312 aaPredicted RBP18.13■□□□□ 0.49
PDLIM5-208ENST00000504489 DHX29Q7Z478 1369 aaKnown RBP18.13■□□□□ 0.49
PDLIM5-208ENST00000504489 ANKRD30AQ9BXX3 1397 aa18.13■□□□□ 0.49
PDLIM5-208ENST00000504489 NCOA1Q15788 1441 aa18.13■□□□□ 0.49
PDLIM5-208ENST00000504489 EIF2AK4Q9P2K8 1649 aaKnown RBP18.12■□□□□ 0.49
PDLIM5-208ENST00000504489 FER1L4A9Z1Z3 1794 aa18.12■□□□□ 0.49
PDLIM5-208ENST00000504489 CHIC2Q9UKJ5 165 aa18.11■□□□□ 0.49
PDLIM5-208ENST00000504489 ROCK1Q13464 1354 aa18.1■□□□□ 0.49
PDLIM5-208ENST00000504489 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.1■□□□□ 0.49
PDLIM5-208ENST00000504489 KIF15Q9NS87 1388 aa18.09■□□□□ 0.49
PDLIM5-208ENST00000504489 ITGAEP38570 1179 aa18.08■□□□□ 0.48
PDLIM5-208ENST00000504489 RRP7BPQ9NSQ0 103 aa18.08■□□□□ 0.48
PDLIM5-208ENST00000504489 MADDQ8WXG6 1647 aa18.07■□□□□ 0.48
PDLIM5-208ENST00000504489 RNF17Q9BXT8 1623 aaKnown RBP18.07■□□□□ 0.48
PDLIM5-208ENST00000504489 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
PDLIM5-208ENST00000504489 RIMS1Q86UR5 1692 aaKnown RBP18.06■□□□□ 0.48
PDLIM5-208ENST00000504489 KDM4FA0A1W2PPD8 638 aa18.05■□□□□ 0.48
PDLIM5-208ENST00000504489 GCC2Q8IWJ2 1684 aa18.05■□□□□ 0.48
PDLIM5-208ENST00000504489 DEPDC5O75140 1603 aa18.04■□□□□ 0.48
PDLIM5-208ENST00000504489 KIF3BO15066 747 aa18.02■□□□□ 0.48
PDLIM5-208ENST00000504489 MLECQ14165 292 aa18.02■□□□□ 0.48
PDLIM5-208ENST00000504489 MROH2AA6NES4 1674 aa18.02■□□□□ 0.47
PDLIM5-208ENST00000504489 CLTCQ00610 1675 aaKnown RBP18.01■□□□□ 0.47
PDLIM5-208ENST00000504489 ANKRD50Q9ULJ7 1429 aa18■□□□□ 0.47
PDLIM5-208ENST00000504489 FAM135AQ9P2D6 1515 aa18■□□□□ 0.47
PDLIM5-208ENST00000504489 MROH1Q8NDA8 1641 aa18■□□□□ 0.47
PDLIM5-208ENST00000504489 ZC3H13Q5T200 1668 aaKnown RBP17.99■□□□□ 0.47
PDLIM5-208ENST00000504489 CEP152O94986 1710 aa17.98■□□□□ 0.47
PDLIM5-208ENST00000504489 C1QBPQ07021 282 aaKnown RBP17.98■□□□□ 0.47
PDLIM5-208ENST00000504489 GGT6Q6P531 493 aa17.98■□□□□ 0.47
PDLIM5-208ENST00000504489 C3P01024 1663 aa17.98■□□□□ 0.47
PDLIM5-208ENST00000504489 SETD1BQ9UPS6 1966 aaKnown RBP17.98■□□□□ 0.47
PDLIM5-208ENST00000504489 CFAP65Q6ZU64 1925 aaKnown RBP17.98■□□□□ 0.47
PDLIM5-208ENST00000504489 PRDM15P57071 1507 aaPredicted RBP17.97■□□□□ 0.47
PDLIM5-208ENST00000504489 NAIPQ13075 1403 aa17.97■□□□□ 0.47
PDLIM5-208ENST00000504489 HFM1A2PYH4 1435 aa17.96■□□□□ 0.47
PDLIM5-208ENST00000504489 CNTLNQ9NXG0 1405 aa17.96■□□□□ 0.47
PDLIM5-208ENST00000504489 UNC13BO14795 1591 aa17.96■□□□□ 0.46
PDLIM5-208ENST00000504489 PTPRMP28827 1452 aa17.95■□□□□ 0.46
PDLIM5-208ENST00000504489 KDM5DQ9BY66 1539 aa17.94■□□□□ 0.46
PDLIM5-208ENST00000504489 ESF1Q9H501 851 aaKnown RBP17.94■□□□□ 0.46
PDLIM5-208ENST00000504489 VWDEQ8N2E2 1590 aa17.93■□□□□ 0.46
PDLIM5-208ENST00000504489 CAMSAP1Q5T5Y3 1602 aa17.91■□□□□ 0.46
PDLIM5-208ENST00000504489 ABCC3O15438 1527 aa17.91■□□□□ 0.46
PDLIM5-208ENST00000504489 IQGAP3Q86VI3 1631 aa17.89■□□□□ 0.45
PDLIM5-208ENST00000504489 WASHC2CQ9Y4E1 1318 aa17.89■□□□□ 0.45
PDLIM5-208ENST00000504489 KANK1Q14678 1352 aa17.89■□□□□ 0.45
PDLIM5-208ENST00000504489 ZMYM3Q14202 1370 aa17.88■□□□□ 0.45
PDLIM5-208ENST00000504489 LMTK2Q8IWU2 1503 aa17.88■□□□□ 0.45
PDLIM5-208ENST00000504489 TET3O43151 1660 aa17.87■□□□□ 0.45
PDLIM5-208ENST00000504489 SETD5Q9C0A6 1442 aa17.85■□□□□ 0.45
PDLIM5-208ENST00000504489 TRIM26Q12899 539 aaPredicted RBP17.84■□□□□ 0.45
PDLIM5-208ENST00000504489 CEBPAP49715 358 aaPredicted RBP17.83■□□□□ 0.44
PDLIM5-208ENST00000504489 PREX1Q8TCU6 1659 aa17.83■□□□□ 0.44
PDLIM5-208ENST00000504489 PZPP20742 1482 aa17.82■□□□□ 0.44
PDLIM5-208ENST00000504489 EFCAB6Q5THR3 1501 aa17.82■□□□□ 0.44
PDLIM5-208ENST00000504489 NPATQ14207 1427 aa17.81■□□□□ 0.44
PDLIM5-208ENST00000504489 ARHGAP31Q2M1Z3 1444 aa17.81■□□□□ 0.44
PDLIM5-208ENST00000504489 NUP155O75694 1391 aa17.81■□□□□ 0.44
PDLIM5-208ENST00000504489 E9PCH4 1651 aa17.81■□□□□ 0.44
PDLIM5-208ENST00000504489 ACIN1Q9UKV3 1341 aaKnown RBP17.81■□□□□ 0.44
PDLIM5-208ENST00000504489 SPATA31D1Q6ZQQ2 1576 aa17.78■□□□□ 0.44
PDLIM5-208ENST00000504489 RAB3GAP2Q9H2M9 1393 aa17.78■□□□□ 0.44
PDLIM5-208ENST00000504489 RPRD2Q5VT52 1461 aaKnown RBP17.77■□□□□ 0.44
PDLIM5-208ENST00000504489 HRCP23327 699 aa17.77■□□□□ 0.44
PDLIM5-208ENST00000504489 TRIM52Q96A61 297 aa17.75■□□□□ 0.43
PDLIM5-208ENST00000504489 MYO3AQ8NEV4 1616 aa17.75■□□□□ 0.43
PDLIM5-208ENST00000504489 ERVK-7P63135 1459 aa17.75■□□□□ 0.43
PDLIM5-208ENST00000504489 ZNF142P52746 1687 aaPredicted RBP17.74■□□□□ 0.43
PDLIM5-208ENST00000504489 FBXO31Q5XUX0 539 aaPredicted RBP17.74■□□□□ 0.43
PDLIM5-208ENST00000504489 SPHKAPQ2M3C7 1700 aa17.74■□□□□ 0.43
PDLIM5-208ENST00000504489 TNRQ92752 1358 aa17.71■□□□□ 0.43
PDLIM5-208ENST00000504489 NOS1P29475 1434 aa17.71■□□□□ 0.43
PDLIM5-208ENST00000504489 SYNMO15061 1565 aa17.7■□□□□ 0.42
PDLIM5-208ENST00000504489 UHRF1BP1Q6BDS2 1440 aa17.69■□□□□ 0.42
PDLIM5-208ENST00000504489 LMTK3Q96Q04 1460 aa17.69■□□□□ 0.42
PDLIM5-208ENST00000504489 SLC4A1APQ9BWU0 796 aaKnown RBP17.68■□□□□ 0.42
PDLIM5-208ENST00000504489 CEP170BQ9Y4F5 1589 aaPredicted RBP17.68■□□□□ 0.42
PDLIM5-208ENST00000504489 NLRP1Q9C000 1473 aa17.68■□□□□ 0.42
PDLIM5-208ENST00000504489 MYO5BQ9ULV0 1848 aa17.68■□□□□ 0.42
PDLIM5-208ENST00000504489 KDM5AP29375 1690 aaKnown RBP17.67■□□□□ 0.42
PDLIM5-208ENST00000504489 U3KPZ7 1027 aaPredicted RBP17.67■□□□□ 0.42
PDLIM5-208ENST00000504489 PIK3C2BO00750 1634 aa17.67■□□□□ 0.42
PDLIM5-208ENST00000504489 SLC4A2P04920 1241 aa17.66■□□□□ 0.42
PDLIM5-208ENST00000504489 MPHOSPH9Q99550 1183 aa17.66■□□□□ 0.42
PDLIM5-208ENST00000504489 UBR1Q8IWV7 1749 aa17.66■□□□□ 0.42
PDLIM5-208ENST00000504489 A2ML1A8K2U0 1454 aa17.65■□□□□ 0.42
PDLIM5-208ENST00000504489 PKD2Q13563 968 aa17.65■□□□□ 0.42
PDLIM5-208ENST00000504489 KIF1BO60333 1816 aa17.64■□□□□ 0.41
PDLIM5-208ENST00000504489 PTPRTO14522 1441 aa17.64■□□□□ 0.41
PDLIM5-208ENST00000504489 SLC52A1Q9NWF4 448 aa17.62■□□□□ 0.41
PDLIM5-208ENST00000504489 TRPM2O94759 1503 aa17.62■□□□□ 0.41
PDLIM5-208ENST00000504489 UGGT1Q9NYU2 1555 aa17.61■□□□□ 0.41
PDLIM5-208ENST00000504489 STRCQ7RTU9 1775 aa17.6■□□□□ 0.41
PDLIM5-208ENST00000504489 CLTCL1P53675 1640 aa17.59■□□□□ 0.41
PDLIM5-208ENST00000504489 PLA2R1Q13018 1463 aa17.59■□□□□ 0.41
PDLIM5-208ENST00000504489 IDI1Q13907 227 aa17.59■□□□□ 0.41
PDLIM5-208ENST00000504489 POLR1AO95602 1720 aaPredicted RBP17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms