RNA–Protein interactions for RNA: ENST00000498751.1

SYNE1-231, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 578 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-231ENST00000498751 PPP1R15AO75807 674 aaPredicted RBP11.1□□□□□ -0.63
SYNE1-231ENST00000498751 RTEL1-TNFRSF6BF6WH68 1400 aa11.09□□□□□ -0.63
SYNE1-231ENST00000498751 RPRD2Q5VT52 1461 aaKnown RBP11.09□□□□□ -0.63
SYNE1-231ENST00000498751 ANKRD30BQ9BXX2 1392 aa11.09□□□□□ -0.63
SYNE1-231ENST00000498751 CHADLQ6NUI6 762 aa11.09□□□□□ -0.63
SYNE1-231ENST00000498751 MPHOSPH9Q99550 1183 aa11.09□□□□□ -0.63
SYNE1-231ENST00000498751 ARHGAP5Q13017 1502 aa11.09□□□□□ -0.63
SYNE1-231ENST00000498751 PRR29P0C7W0 189 aa11.08□□□□□ -0.64
SYNE1-231ENST00000498751 TSPY4P0CV99 314 aa11.08□□□□□ -0.64
SYNE1-231ENST00000498751 TSPY10P0CW01 314 aa11.08□□□□□ -0.64
SYNE1-231ENST00000498751 EVX2Q03828 476 aa11.08□□□□□ -0.64
SYNE1-231ENST00000498751 CHIC2Q9UKJ5 165 aa11.08□□□□□ -0.64
SYNE1-231ENST00000498751 MAGI2Q86UL8 1455 aa11.07□□□□□ -0.64
SYNE1-231ENST00000498751 DIEXFQ68CQ4 756 aaKnown RBP11.07□□□□□ -0.64
SYNE1-231ENST00000498751 SYCP2Q9BX26 1530 aa11.07□□□□□ -0.64
SYNE1-231ENST00000498751 UNC13BO14795 1591 aa11.07□□□□□ -0.64
SYNE1-231ENST00000498751 SPDYE4A6NLX3 237 aa11.06□□□□□ -0.64
SYNE1-231ENST00000498751 EFCAB2Q5VUJ9 269 aa11.06□□□□□ -0.64
SYNE1-231ENST00000498751 KIF15Q9NS87 1388 aa11.05□□□□□ -0.64
SYNE1-231ENST00000498751 ARHGEF12Q9NZN5 1544 aa11.05□□□□□ -0.64
SYNE1-231ENST00000498751 ERBINQ96RT1 1412 aa11.05□□□□□ -0.64
SYNE1-231ENST00000498751 SIN3AQ96ST3 1273 aa11.05□□□□□ -0.64
SYNE1-231ENST00000498751 DUOX2Q9NRD8 1548 aa11.04□□□□□ -0.64
SYNE1-231ENST00000498751 TONSLQ96HA7 1378 aa11.04□□□□□ -0.64
SYNE1-231ENST00000498751 ASXL2Q76L83 1435 aa11.03□□□□□ -0.64
SYNE1-231ENST00000498751 TEX14Q8IWB6 1497 aa11.03□□□□□ -0.64
SYNE1-231ENST00000498751 ATP10AO60312 1499 aa11.02□□□□□ -0.65
SYNE1-231ENST00000498751 ZNF777Q9ULD5 760 aaPredicted RBP11.02□□□□□ -0.65
SYNE1-231ENST00000498751 CFAP74Q9C0B2 1584 aa11.02□□□□□ -0.65
SYNE1-231ENST00000498751 HNRNPMP52272 730 aaKnown RBP eCLIP11.01□□□□□ -0.65
SYNE1-231ENST00000498751 IQGAP3Q86VI3 1631 aa11.01□□□□□ -0.65
SYNE1-231ENST00000498751 INO80Q9ULG1 1556 aaPredicted RBP11□□□□□ -0.65
SYNE1-231ENST00000498751 TRIM52Q96A61 297 aa11□□□□□ -0.65
SYNE1-231ENST00000498751 FANCAO15360 1455 aa11□□□□□ -0.65
SYNE1-231ENST00000498751 ZFYVE16Q7Z3T8 1539 aa10.99□□□□□ -0.65
SYNE1-231ENST00000498751 C19orf67A6NJJ6 358 aa10.98□□□□□ -0.65
SYNE1-231ENST00000498751 TRAPPC8Q9Y2L5 1435 aa10.98□□□□□ -0.65
SYNE1-231ENST00000498751 FAM135AQ9P2D6 1515 aa10.98□□□□□ -0.65
SYNE1-231ENST00000498751 DEPDC5O75140 1603 aa10.98□□□□□ -0.65
SYNE1-231ENST00000498751 EIF2AK4Q9P2K8 1649 aaKnown RBP10.98□□□□□ -0.65
SYNE1-231ENST00000498751 NEUROD1Q13562 356 aa10.97□□□□□ -0.65
SYNE1-231ENST00000498751 UHRF1BP1Q6BDS2 1440 aa10.97□□□□□ -0.65
SYNE1-231ENST00000498751 GLI2P10070 1586 aa10.97□□□□□ -0.65
SYNE1-231ENST00000498751 KDM5CP41229 1560 aa10.96□□□□□ -0.65
SYNE1-231ENST00000498751 VWDEQ8N2E2 1590 aa10.96□□□□□ -0.65
SYNE1-231ENST00000498751 NUP155O75694 1391 aa10.96□□□□□ -0.65
SYNE1-231ENST00000498751 NEO1Q92859 1461 aa10.95□□□□□ -0.66
SYNE1-231ENST00000498751 ATP7AQ04656 1500 aa10.94□□□□□ -0.66
SYNE1-231ENST00000498751 NPM1P06748 294 aaKnown RBP eCLIP10.94□□□□□ -0.66
SYNE1-231ENST00000498751 KCNH8Q96L42 1107 aa10.94□□□□□ -0.66
SYNE1-231ENST00000498751 BCORL1Q5H9F3 1711 aa10.94□□□□□ -0.66
SYNE1-231ENST00000498751 NEURL4Q96JN8 1562 aa10.94□□□□□ -0.66
SYNE1-231ENST00000498751 ADGRL1O94910 1474 aa10.93□□□□□ -0.66
SYNE1-231ENST00000498751 ZNF518AQ6AHZ1 1483 aa10.93□□□□□ -0.66
SYNE1-231ENST00000498751 MLH3Q9UHC1 1453 aa10.93□□□□□ -0.66
SYNE1-231ENST00000498751 PKD2Q13563 968 aa10.92□□□□□ -0.66
SYNE1-231ENST00000498751 L3MBTL2Q969R5 705 aa10.92□□□□□ -0.66
SYNE1-231ENST00000498751 PRDM15P57071 1507 aaPredicted RBP10.92□□□□□ -0.66
SYNE1-231ENST00000498751 MAP3K4Q9Y6R4 1608 aa10.91□□□□□ -0.66
SYNE1-231ENST00000498751 SPAG9O60271 1321 aaKnown RBP10.91□□□□□ -0.66
SYNE1-231ENST00000498751 FARP1Q9Y4F1 1045 aaPredicted RBP10.91□□□□□ -0.66
SYNE1-231ENST00000498751 CD109Q6YHK3 1445 aa10.91□□□□□ -0.66
SYNE1-231ENST00000498751 SPATA31E1Q6ZUB1 1445 aa10.91□□□□□ -0.66
SYNE1-231ENST00000498751 SCAPERQ9BY12 1400 aa10.91□□□□□ -0.66
SYNE1-231ENST00000498751 LMTK2Q8IWU2 1503 aa10.9□□□□□ -0.66
SYNE1-231ENST00000498751 STAG3Q9UJ98 1225 aa10.9□□□□□ -0.66
SYNE1-231ENST00000498751 RIMBP3CA6NJZ7 1639 aa10.9□□□□□ -0.66
SYNE1-231ENST00000498751 RIMBP3BA6NNM3 1639 aa10.9□□□□□ -0.66
SYNE1-231ENST00000498751 RIMBP3Q9UFD9 1639 aa10.9□□□□□ -0.66
SYNE1-231ENST00000498751 POGZQ7Z3K3 1410 aa10.9□□□□□ -0.66
SYNE1-231ENST00000498751 KIDINS220Q9ULH0 1771 aa10.9□□□□□ -0.67
SYNE1-231ENST00000498751 DHX29Q7Z478 1369 aaKnown RBP10.9□□□□□ -0.67
SYNE1-231ENST00000498751 PLA2R1Q13018 1463 aa10.89□□□□□ -0.67
SYNE1-231ENST00000498751 CREBZFQ9NS37 354 aa10.89□□□□□ -0.67
SYNE1-231ENST00000498751 PTPRTO14522 1441 aa10.89□□□□□ -0.67
SYNE1-231ENST00000498751 RNF17Q9BXT8 1623 aaKnown RBP10.88□□□□□ -0.67
SYNE1-231ENST00000498751 MROH1Q8NDA8 1641 aa10.87□□□□□ -0.67
SYNE1-231ENST00000498751 RALGAPBQ86X10 1494 aa10.87□□□□□ -0.67
SYNE1-231ENST00000498751 STAC3Q96MF2 364 aa10.87□□□□□ -0.67
SYNE1-231ENST00000498751 TET3O43151 1660 aa10.87□□□□□ -0.67
SYNE1-231ENST00000498751 HECW2Q9P2P5 1572 aa10.86□□□□□ -0.67
SYNE1-231ENST00000498751 TRPM2O94759 1503 aa10.86□□□□□ -0.67
SYNE1-231ENST00000498751 LAMC1P11047 1609 aa10.85□□□□□ -0.67
SYNE1-231ENST00000498751 POLR1AO95602 1720 aaPredicted RBP10.85□□□□□ -0.67
SYNE1-231ENST00000498751 MIER1Q8N108 512 aa10.85□□□□□ -0.67
SYNE1-231ENST00000498751 PROM2Q8N271 834 aa10.85□□□□□ -0.67
SYNE1-231ENST00000498751 AFAP1Q8N556 730 aa10.85□□□□□ -0.67
SYNE1-231ENST00000498751 ARID4BQ4LE39 1312 aaPredicted RBP10.84□□□□□ -0.67
SYNE1-231ENST00000498751 CCDC144AA2RUR9 1427 aa10.84□□□□□ -0.67
SYNE1-231ENST00000498751 EIF4G2P78344 907 aaKnown RBP eCLIP10.84□□□□□ -0.67
SYNE1-231ENST00000498751 ZMYM4Q5VZL5 1548 aa10.84□□□□□ -0.67
SYNE1-231ENST00000498751 E9PCH4 1651 aa10.83□□□□□ -0.68
SYNE1-231ENST00000498751 DIP2BQ9P265 1576 aa10.83□□□□□ -0.68
SYNE1-231ENST00000498751 A2MP01023 1474 aa10.83□□□□□ -0.68
SYNE1-231ENST00000498751 GPRASP1Q5JY77 1395 aa10.83□□□□□ -0.68
SYNE1-231ENST00000498751 NBPF8Q3BBV2 869 aa10.83□□□□□ -0.68
SYNE1-231ENST00000498751 FRMPD1Q5SYB0 1578 aa10.82□□□□□ -0.68
SYNE1-231ENST00000498751 RICTORQ6R327 1708 aa10.82□□□□□ -0.68
SYNE1-231ENST00000498751 CD44P16070 742 aaKnown RBP10.82□□□□□ -0.68
SYNE1-231ENST00000498751 REREQ9P2R6 1566 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms