RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 A2MP01023 1474 aa12.1□□□□□ -0.47
SF3A1-210ENST00000498259 KIF3BO15066 747 aa12.1□□□□□ -0.47
SF3A1-210ENST00000498259 RAPGEF3O95398 923 aa12.1□□□□□ -0.47
SF3A1-210ENST00000498259 FAM135AQ9P2D6 1515 aa12.09□□□□□ -0.47
SF3A1-210ENST00000498259 PPP1R15AO75807 674 aaPredicted RBP12.07□□□□□ -0.48
SF3A1-210ENST00000498259 RPRD2Q5VT52 1461 aaKnown RBP12.07□□□□□ -0.48
SF3A1-210ENST00000498259 KIDINS220Q9ULH0 1771 aa12.06□□□□□ -0.48
SF3A1-210ENST00000498259 PPP6R1Q9UPN7 881 aa12.06□□□□□ -0.48
SF3A1-210ENST00000498259 IQGAP3Q86VI3 1631 aa12.06□□□□□ -0.48
SF3A1-210ENST00000498259 ZMYM4Q5VZL5 1548 aa12.06□□□□□ -0.48
SF3A1-210ENST00000498259 ZNF316A6NFI3 1004 aaPredicted RBP12.05□□□□□ -0.48
SF3A1-210ENST00000498259 TRHP20396 242 aaPredicted RBP12.05□□□□□ -0.48
SF3A1-210ENST00000498259 FOXD1Q16676 465 aa12.05□□□□□ -0.48
SF3A1-210ENST00000498259 CCDC144AA2RUR9 1427 aa12.04□□□□□ -0.48
SF3A1-210ENST00000498259 STAC3Q96MF2 364 aa12.04□□□□□ -0.48
SF3A1-210ENST00000498259 RICTORQ6R327 1708 aa12.03□□□□□ -0.48
SF3A1-210ENST00000498259 DEPDC5O75140 1603 aa12.03□□□□□ -0.48
SF3A1-210ENST00000498259 ATP10AO60312 1499 aa12.02□□□□□ -0.48
SF3A1-210ENST00000498259 WASHC2CQ9Y4E1 1318 aa12.02□□□□□ -0.49
SF3A1-210ENST00000498259 KIF13AQ9H1H9 1805 aa12.02□□□□□ -0.49
SF3A1-210ENST00000498259 TSPOAP1O95153 1857 aa12.02□□□□□ -0.49
SF3A1-210ENST00000498259 PRDM15P57071 1507 aaPredicted RBP12.01□□□□□ -0.49
SF3A1-210ENST00000498259 GGT6Q6P531 493 aa12.01□□□□□ -0.49
SF3A1-210ENST00000498259 BCORL1Q5H9F3 1711 aa12□□□□□ -0.49
SF3A1-210ENST00000498259 L3MBTL2Q969R5 705 aa12□□□□□ -0.49
SF3A1-210ENST00000498259 LMTK2Q8IWU2 1503 aa12□□□□□ -0.49
SF3A1-210ENST00000498259 PPRC1Q5VV67 1664 aaKnown RBP12□□□□□ -0.49
SF3A1-210ENST00000498259 DIP2CQ9Y2E4 1556 aa11.99□□□□□ -0.49
SF3A1-210ENST00000498259 RNF17Q9BXT8 1623 aaKnown RBP11.99□□□□□ -0.49
SF3A1-210ENST00000498259 TET3O43151 1660 aa11.98□□□□□ -0.49
SF3A1-210ENST00000498259 ABCA6Q8N139 1617 aa11.98□□□□□ -0.49
SF3A1-210ENST00000498259 VWDEQ8N2E2 1590 aa11.98□□□□□ -0.49
SF3A1-210ENST00000498259 REREQ9P2R6 1566 aa11.98□□□□□ -0.49
SF3A1-210ENST00000498259 ESF1Q9H501 851 aaKnown RBP11.98□□□□□ -0.49
SF3A1-210ENST00000498259 AGLP35573 1532 aa11.96□□□□□ -0.49
SF3A1-210ENST00000498259 FRMPD1Q5SYB0 1578 aa11.96□□□□□ -0.5
SF3A1-210ENST00000498259 PTPRTO14522 1441 aa11.95□□□□□ -0.5
SF3A1-210ENST00000498259 YEATS2Q9ULM3 1422 aa11.95□□□□□ -0.5
SF3A1-210ENST00000498259 ARHGAP31Q2M1Z3 1444 aa11.94□□□□□ -0.5
SF3A1-210ENST00000498259 ZC3H13Q5T200 1668 aaKnown RBP11.94□□□□□ -0.5
SF3A1-210ENST00000498259 TRPM2O94759 1503 aa11.93□□□□□ -0.5
SF3A1-210ENST00000498259 EFCAB6Q5THR3 1501 aa11.93□□□□□ -0.5
SF3A1-210ENST00000498259 CNTLNQ9NXG0 1405 aa11.93□□□□□ -0.5
SF3A1-210ENST00000498259 EIF4G2P78344 907 aaKnown RBP eCLIP11.92□□□□□ -0.5
SF3A1-210ENST00000498259 DCAF11Q8TEB1 546 aa11.92□□□□□ -0.5
SF3A1-210ENST00000498259 SLC52A1Q9NWF4 448 aa11.92□□□□□ -0.5
SF3A1-210ENST00000498259 ARHGEF40Q8TER5 1519 aa11.91□□□□□ -0.5
SF3A1-210ENST00000498259 MROH1Q8NDA8 1641 aa11.91□□□□□ -0.5
SF3A1-210ENST00000498259 DIEXFQ68CQ4 756 aaKnown RBP11.91□□□□□ -0.5
SF3A1-210ENST00000498259 ABCC3O15438 1527 aa11.91□□□□□ -0.5
SF3A1-210ENST00000498259 ARID4BQ4LE39 1312 aaPredicted RBP11.9□□□□□ -0.5
SF3A1-210ENST00000498259 PLA2R1Q13018 1463 aa11.9□□□□□ -0.5
SF3A1-210ENST00000498259 UHRF1BP1Q6BDS2 1440 aa11.9□□□□□ -0.5
SF3A1-210ENST00000498259 NEURL4Q96JN8 1562 aa11.9□□□□□ -0.5
SF3A1-210ENST00000498259 E9PCH4 1651 aa11.9□□□□□ -0.5
SF3A1-210ENST00000498259 RGL3Q3MIN7 710 aa11.89□□□□□ -0.51
SF3A1-210ENST00000498259 COL17A1Q9UMD9 1497 aaPredicted RBP11.89□□□□□ -0.51
SF3A1-210ENST00000498259 SPHKAPQ2M3C7 1700 aa11.89□□□□□ -0.51
SF3A1-210ENST00000498259 RPGRIP1LQ68CZ1 1315 aa11.88□□□□□ -0.51
SF3A1-210ENST00000498259 ZNF326Q5BKZ1 582 aaKnown RBP11.88□□□□□ -0.51
SF3A1-210ENST00000498259 KDM2AQ9Y2K7 1162 aa11.88□□□□□ -0.51
SF3A1-210ENST00000498259 NPATQ14207 1427 aa11.87□□□□□ -0.51
SF3A1-210ENST00000498259 SLC24A1O60721 1099 aa11.86□□□□□ -0.51
SF3A1-210ENST00000498259 CAMSAP1Q5T5Y3 1602 aa11.85□□□□□ -0.51
SF3A1-210ENST00000498259 SPATA31E1Q6ZUB1 1445 aa11.85□□□□□ -0.51
SF3A1-210ENST00000498259 CEP152O94986 1710 aa11.84□□□□□ -0.51
SF3A1-210ENST00000498259 CARD11Q9BXL7 1154 aa11.84□□□□□ -0.51
SF3A1-210ENST00000498259 NOS1P29475 1434 aa11.84□□□□□ -0.51
SF3A1-210ENST00000498259 ROCK2O75116 1388 aaKnown RBP11.83□□□□□ -0.52
SF3A1-210ENST00000498259 CHGAP10645 457 aaKnown RBP11.83□□□□□ -0.52
SF3A1-210ENST00000498259 HDGFP51858 240 aaKnown RBP11.83□□□□□ -0.52
SF3A1-210ENST00000498259 NBPF8Q3BBV2 869 aa11.83□□□□□ -0.52
SF3A1-210ENST00000498259 RALGAPBQ86X10 1494 aa11.83□□□□□ -0.52
SF3A1-210ENST00000498259 VGFO15240 615 aaPredicted RBP11.82□□□□□ -0.52
SF3A1-210ENST00000498259 MLECQ14165 292 aa11.82□□□□□ -0.52
SF3A1-210ENST00000498259 STAG3Q9UJ98 1225 aa11.82□□□□□ -0.52
SF3A1-210ENST00000498259 PRAG1Q86YV5 1406 aa11.82□□□□□ -0.52
SF3A1-210ENST00000498259 KIF1BO60333 1816 aa11.81□□□□□ -0.52
SF3A1-210ENST00000498259 CLTCL1P53675 1640 aa11.81□□□□□ -0.52
SF3A1-210ENST00000498259 HSPA5P11021 654 aaKnown RBP11.8□□□□□ -0.52
SF3A1-210ENST00000498259 ZMYM3Q14202 1370 aa11.79□□□□□ -0.52
SF3A1-210ENST00000498259 USP47Q96K76 1375 aa11.79□□□□□ -0.52
SF3A1-210ENST00000498259 MYOM2P54296 1465 aa11.78□□□□□ -0.52
SF3A1-210ENST00000498259 IDI1Q13907 227 aa11.78□□□□□ -0.52
SF3A1-210ENST00000498259 EIF3AQ14152 1382 aaKnown RBP11.77□□□□□ -0.53
SF3A1-210ENST00000498259 GPRASP1Q5JY77 1395 aa11.77□□□□□ -0.53
SF3A1-210ENST00000498259 ERVK-7P63135 1459 aa11.76□□□□□ -0.53
SF3A1-210ENST00000498259 ADGRB3O60242 1522 aa11.76□□□□□ -0.53
SF3A1-210ENST00000498259 PLPPR3Q6T4P5 718 aa11.76□□□□□ -0.53
SF3A1-210ENST00000498259 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.76□□□□□ -0.53
SF3A1-210ENST00000498259 CLTCQ00610 1675 aaKnown RBP11.75□□□□□ -0.53
SF3A1-210ENST00000498259 CDCA8Q53HL2 280 aa11.75□□□□□ -0.53
SF3A1-210ENST00000498259 PIK3C2BO00750 1634 aa11.75□□□□□ -0.53
SF3A1-210ENST00000498259 PREX1Q8TCU6 1659 aa11.75□□□□□ -0.53
SF3A1-210ENST00000498259 ZFYVE9O95405 1425 aa11.74□□□□□ -0.53
SF3A1-210ENST00000498259 SPATA31D1Q6ZQQ2 1576 aa11.74□□□□□ -0.53
SF3A1-210ENST00000498259 LAMC1P11047 1609 aa11.74□□□□□ -0.53
SF3A1-210ENST00000498259 MROH2AA6NES4 1674 aa11.73□□□□□ -0.53
SF3A1-210ENST00000498259 FBXO31Q5XUX0 539 aaPredicted RBP11.73□□□□□ -0.53
SF3A1-210ENST00000498259 TNRQ92752 1358 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms