RNA–Protein interactions for RNA: ENST00000497871.1

ATPAF2-209, Transcript of ATP synthase mitochondrial F1 complex assembly factor 2, human

TSL 2

Gene ATPAF2, Length 633 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ATPAF2-209	ENST00000497871	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	28.81	■■■□□ 2.2
ATPAF2-209	ENST00000497871	MAP3K1	Q13233	1512 aa		28.81	■■■□□ 2.2
ATPAF2-209	ENST00000497871	FBXO31	Q5XUX0	539 aa	Predicted RBP	28.81	■■■□□ 2.2
ATPAF2-209	ENST00000497871	ZNF142	P52746	1687 aa	Predicted RBP	28.79	■■■□□ 2.2
ATPAF2-209	ENST00000497871	TCOF1	Q13428	1488 aa	Known RBP	28.78	■■■□□ 2.2
ATPAF2-209	ENST00000497871	FAM135A	Q9P2D6	1515 aa		28.77	■■■□□ 2.2
ATPAF2-209	ENST00000497871	A2ML1	A8K2U0	1454 aa		28.77	■■■□□ 2.2
ATPAF2-209	ENST00000497871	IQSEC2	Q5JU85	1478 aa		28.77	■■■□□ 2.2
ATPAF2-209	ENST00000497871	TNR	Q92752	1358 aa		28.76	■■■□□ 2.2
ATPAF2-209	ENST00000497871	KDM5D	Q9BY66	1539 aa		28.75	■■■□□ 2.19
ATPAF2-209	ENST00000497871	MIA2	Q96PC5	1412 aa		28.75	■■■□□ 2.19
ATPAF2-209	ENST00000497871	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	28.74	■■■□□ 2.19
ATPAF2-209	ENST00000497871	PZP	P20742	1482 aa		28.74	■■■□□ 2.19
ATPAF2-209	ENST00000497871	MYOM3	Q5VTT5	1437 aa		28.71	■■■□□ 2.19
ATPAF2-209	ENST00000497871	DNMT1	P26358	1616 aa	Known RBP	28.69	■■■□□ 2.18
ATPAF2-209	ENST00000497871	MAST1	Q9Y2H9	1570 aa		28.67	■■■□□ 2.18
ATPAF2-209	ENST00000497871	APLP2	Q06481	763 aa		28.67	■■■□□ 2.18
ATPAF2-209	ENST00000497871	THEMIS	Q8N1K5	641 aa	Predicted RBP	28.67	■■■□□ 2.18
ATPAF2-209	ENST00000497871	ANKLE2	Q86XL3	938 aa		28.63	■■■□□ 2.17
ATPAF2-209	ENST00000497871	NLRP1	Q9C000	1473 aa		28.61	■■■□□ 2.17
ATPAF2-209	ENST00000497871	UBAP1L	F5GYI3	381 aa		28.59	■■■□□ 2.17
ATPAF2-209	ENST00000497871	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.59	■■■□□ 2.17
ATPAF2-209	ENST00000497871	RNF17	Q9BXT8	1623 aa	Known RBP	28.58	■■■□□ 2.17
ATPAF2-209	ENST00000497871	ABCC3	O15438	1527 aa		28.57	■■■□□ 2.16
ATPAF2-209	ENST00000497871	DISP3	Q9P2K9	1392 aa		28.55	■■■□□ 2.16
ATPAF2-209	ENST00000497871	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.54	■■■□□ 2.16
ATPAF2-209	ENST00000497871	DUOX2	Q9NRD8	1548 aa		28.54	■■■□□ 2.16
ATPAF2-209	ENST00000497871	UGGT1	Q9NYU2	1555 aa		28.54	■■■□□ 2.16
ATPAF2-209	ENST00000497871	ABCC5	O15440	1437 aa		28.53	■■■□□ 2.16
ATPAF2-209	ENST00000497871	RRP7BP	Q9NSQ0	103 aa		28.52	■■■□□ 2.16
ATPAF2-209	ENST00000497871	KIF15	Q9NS87	1388 aa		28.51	■■■□□ 2.16
ATPAF2-209	ENST00000497871	NEURL4	Q96JN8	1562 aa		28.51	■■■□□ 2.15
ATPAF2-209	ENST00000497871	ZC3H13	Q5T200	1668 aa	Known RBP	28.49	■■■□□ 2.15
ATPAF2-209	ENST00000497871	SHANK2	Q9UPX8	1470 aa		28.49	■■■□□ 2.15
ATPAF2-209	ENST00000497871	SPATA31D1	Q6ZQQ2	1576 aa		28.49	■■■□□ 2.15
ATPAF2-209	ENST00000497871	MED14	O60244	1454 aa		28.48	■■■□□ 2.15
ATPAF2-209	ENST00000497871	ERVK-7	P63135	1459 aa		28.48	■■■□□ 2.15
ATPAF2-209	ENST00000497871	MROH1	Q8NDA8	1641 aa		28.47	■■■□□ 2.15
ATPAF2-209	ENST00000497871	NPHP4	O75161	1426 aa	Predicted RBP	28.47	■■■□□ 2.15
ATPAF2-209	ENST00000497871	POLR1A	O95602	1720 aa	Predicted RBP	28.46	■■■□□ 2.15
ATPAF2-209	ENST00000497871	ERBIN	Q96RT1	1412 aa		28.45	■■■□□ 2.15
ATPAF2-209	ENST00000497871	CPS1	P31327	1500 aa		28.45	■■■□□ 2.15
ATPAF2-209	ENST00000497871	PTPN23	Q9H3S7	1636 aa		28.45	■■■□□ 2.14
ATPAF2-209	ENST00000497871	DAPK1	P53355	1430 aa		28.44	■■■□□ 2.14
ATPAF2-209	ENST00000497871	FGD6	Q6ZV73	1430 aa		28.44	■■■□□ 2.14
ATPAF2-209	ENST00000497871	ARHGAP31	Q2M1Z3	1444 aa		28.43	■■■□□ 2.14
ATPAF2-209	ENST00000497871	TOM1	O60784	492 aa		28.42	■■■□□ 2.14
ATPAF2-209	ENST00000497871	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	28.42	■■■□□ 2.14	6e-6	■□□□□ 8.2
ATPAF2-209	ENST00000497871	DEPDC5	O75140	1603 aa		28.42	■■■□□ 2.14
ATPAF2-209	ENST00000497871	ILDR2	Q71H61	639 aa		28.41	■■■□□ 2.14
ATPAF2-209	ENST00000497871	CHIC2	Q9UKJ5	165 aa		28.39	■■■□□ 2.14
ATPAF2-209	ENST00000497871	ANKRD30A	Q9BXX3	1397 aa		28.38	■■■□□ 2.13
ATPAF2-209	ENST00000497871	KANK1	Q14678	1352 aa		28.37	■■■□□ 2.13
ATPAF2-209	ENST00000497871	VWDE	Q8N2E2	1590 aa		28.37	■■■□□ 2.13
ATPAF2-209	ENST00000497871	PRDM15	P57071	1507 aa	Predicted RBP	28.37	■■■□□ 2.13
ATPAF2-209	ENST00000497871	CEP152	O94986	1710 aa		28.35	■■■□□ 2.13
ATPAF2-209	ENST00000497871	CROCC2	H7BZ55	1655 aa		28.35	■■■□□ 2.13
ATPAF2-209	ENST00000497871	PIP4K2B	P78356	416 aa		28.34	■■■□□ 2.13
ATPAF2-209	ENST00000497871	SCAF1	Q9H7N4	1312 aa	Known RBP	28.33	■■■□□ 2.13
ATPAF2-209	ENST00000497871	TXNDC2	Q86VQ3	553 aa		28.32	■■■□□ 2.12
ATPAF2-209	ENST00000497871	LTK	P29376	864 aa		28.31	■■■□□ 2.12
ATPAF2-209	ENST00000497871	IQGAP1	P46940	1657 aa		28.31	■■■□□ 2.12
ATPAF2-209	ENST00000497871	CFAP65	Q6ZU64	1925 aa	Known RBP	28.3	■■■□□ 2.12
ATPAF2-209	ENST00000497871	EID1	Q9Y6B2	187 aa		28.29	■■■□□ 2.12
ATPAF2-209	ENST00000497871	HSPA1L	P34931	641 aa		28.28	■■■□□ 2.12
ATPAF2-209	ENST00000497871	UBR1	Q8IWV7	1749 aa		28.28	■■■□□ 2.12
ATPAF2-209	ENST00000497871	SCAF11	Q99590	1463 aa	Known RBP	28.27	■■■□□ 2.12
ATPAF2-209	ENST00000497871	ARHGAP23	Q9P227	1491 aa		28.27	■■■□□ 2.12
ATPAF2-209	ENST00000497871	SOCS7	O14512	581 aa		28.27	■■■□□ 2.12
ATPAF2-209	ENST00000497871	FAM50A	Q14320	339 aa	Known RBP	28.27	■■■□□ 2.12
ATPAF2-209	ENST00000497871	STAG3	Q9UJ98	1225 aa		28.26	■■■□□ 2.11
ATPAF2-209	ENST00000497871	SLIT1	O75093	1534 aa		28.26	■■■□□ 2.11
ATPAF2-209	ENST00000497871	LMTK2	Q8IWU2	1503 aa		28.25	■■■□□ 2.11
ATPAF2-209	ENST00000497871	IDI1	Q13907	227 aa		28.24	■■■□□ 2.11
ATPAF2-209	ENST00000497871	ADGRL2	O95490	1459 aa		28.22	■■■□□ 2.11
ATPAF2-209	ENST00000497871	LRRC7	Q96NW7	1537 aa		28.22	■■■□□ 2.11
ATPAF2-209	ENST00000497871	TMEM2	Q9UHN6	1383 aa		28.22	■■■□□ 2.11
ATPAF2-209	ENST00000497871	SLC52A1	Q9NWF4	448 aa		28.17	■■■□□ 2.1
ATPAF2-209	ENST00000497871	ANKRD50	Q9ULJ7	1429 aa		28.17	■■■□□ 2.1
ATPAF2-209	ENST00000497871	NOS1	P29475	1434 aa		28.16	■■■□□ 2.1
ATPAF2-209	ENST00000497871	PIK3C2B	O00750	1634 aa		28.15	■■■□□ 2.1
ATPAF2-209	ENST00000497871	STRCP1	A6NGW2	1772 aa		28.14	■■■□□ 2.1
ATPAF2-209	ENST00000497871	ALK	Q9UM73	1620 aa		28.14	■■■□□ 2.09
ATPAF2-209	ENST00000497871	EFCAB6	Q5THR3	1501 aa		28.13	■■■□□ 2.09
ATPAF2-209	ENST00000497871	SYNM	O15061	1565 aa		28.11	■■■□□ 2.09
ATPAF2-209	ENST00000497871	KDM5A	P29375	1690 aa	Known RBP	28.09	■■■□□ 2.09
ATPAF2-209	ENST00000497871	KCNA6	P17658	529 aa		28.07	■■■□□ 2.08
ATPAF2-209	ENST00000497871	RPRD2	Q5VT52	1461 aa	Known RBP	28.07	■■■□□ 2.08
ATPAF2-209	ENST00000497871	SLC26A8	Q96RN1	970 aa		28.05	■■■□□ 2.08
ATPAF2-209	ENST00000497871	ROCK1	Q13464	1354 aa		28.01	■■■□□ 2.07
ATPAF2-209	ENST00000497871	TET3	O43151	1660 aa		28.01	■■■□□ 2.07
ATPAF2-209	ENST00000497871	HDGF	P51858	240 aa	Known RBP	28.01	■■■□□ 2.07
ATPAF2-209	ENST00000497871	ADGRB3	O60242	1522 aa		28.01	■■■□□ 2.07
ATPAF2-209	ENST00000497871	BCAN	Q96GW7	911 aa		28	■■■□□ 2.07
ATPAF2-209	ENST00000497871	MED1	Q15648	1581 aa	Predicted RBP	27.99	■■■□□ 2.07
ATPAF2-209	ENST00000497871	SENP3	Q9H4L4	574 aa	Predicted RBP	27.99	■■■□□ 2.07
ATPAF2-209	ENST00000497871	PROSER2	Q86WR7	435 aa	Predicted RBP	27.98	■■■□□ 2.07
ATPAF2-209	ENST00000497871	TMEM94	Q12767	1356 aa		27.98	■■■□□ 2.07
ATPAF2-209	ENST00000497871	ZFYVE9	O95405	1425 aa		27.92	■■■□□ 2.06
ATPAF2-209	ENST00000497871	FAM135B	Q49AJ0	1406 aa		27.92	■■■□□ 2.06

Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms