RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 PCDHGA10Q9Y5H3 936 aa9.46□□□□□ -0.9
SMC4-225ENST00000497203 SEMA3EO15041 775 aa9.45□□□□□ -0.9
SMC4-225ENST00000497203 MLLT3P42568 568 aaPredicted RBP9.44□□□□□ -0.9
SMC4-225ENST00000497203 IFFO2Q5TF58 517 aa9.44□□□□□ -0.9
SMC4-225ENST00000497203 GRXCR2A6NFK2 248 aa9.43□□□□□ -0.9
SMC4-225ENST00000497203 PHF14O94880 888 aa9.43□□□□□ -0.9
SMC4-225ENST00000497203 KCNK17Q96T54 332 aa9.43□□□□□ -0.9
SMC4-225ENST00000497203 VPS9D1Q9Y2B5 631 aa9.42□□□□□ -0.9
SMC4-225ENST00000497203 PRIM1P49642 420 aaKnown RBP9.41□□□□□ -0.9
SMC4-225ENST00000497203 NBR1Q14596 966 aa9.41□□□□□ -0.9
SMC4-225ENST00000497203 TYW1BQ6NUM6 668 aa9.41□□□□□ -0.9
SMC4-225ENST00000497203 ZDHHC16Q969W1 377 aa9.41□□□□□ -0.9
SMC4-225ENST00000497203 KCNH8Q96L42 1107 aa9.41□□□□□ -0.9
SMC4-225ENST00000497203 ADAM33Q9BZ11 813 aa9.41□□□□□ -0.9
SMC4-225ENST00000497203 STAC3Q96MF2 364 aa9.4□□□□□ -0.9
SMC4-225ENST00000497203 EPAS1Q99814 870 aa9.4□□□□□ -0.9
SMC4-225ENST00000497203 SLC4A5Q9BY07 1137 aa9.4□□□□□ -0.9
SMC4-225ENST00000497203 TESPA1A2RU30 521 aaPredicted RBP9.39□□□□□ -0.91
SMC4-225ENST00000497203 OSBPP22059 807 aa9.39□□□□□ -0.91
SMC4-225ENST00000497203 Q6ZNB5 142 aa9.38□□□□□ -0.91
SMC4-225ENST00000497203 FBXW7Q969H0 707 aa9.38□□□□□ -0.91
SMC4-225ENST00000497203 RBM33Q96EV2 1170 aaKnown RBP9.38□□□□□ -0.91
SMC4-225ENST00000497203 BCL2L12Q9HB09 334 aa9.38□□□□□ -0.91
SMC4-225ENST00000497203 A0A0G2JS52 829 aa9.37□□□□□ -0.91
SMC4-225ENST00000497203 EN1Q05925 392 aaPredicted RBP9.36□□□□□ -0.91
SMC4-225ENST00000497203 BHMG1C9JSJ3 638 aaPredicted RBP9.35□□□□□ -0.91
SMC4-225ENST00000497203 PTPN5P54829 565 aa9.35□□□□□ -0.91
SMC4-225ENST00000497203 THSD4Q6ZMP0 1018 aa9.35□□□□□ -0.91
SMC4-225ENST00000497203 MAP3K7O43318 606 aa9.34□□□□□ -0.91
SMC4-225ENST00000497203 TSR1Q2NL82 804 aaKnown RBP9.34□□□□□ -0.91
SMC4-225ENST00000497203 PTPREP23469 700 aa9.33□□□□□ -0.92
SMC4-225ENST00000497203 C6orf132Q5T0Z8 1188 aa9.33□□□□□ -0.92
SMC4-225ENST00000497203 BCANQ96GW7 911 aa9.33□□□□□ -0.92
SMC4-225ENST00000497203 COL9A1P20849 921 aa9.31□□□□□ -0.92
SMC4-225ENST00000497203 ZBED2Q9BTP6 218 aa9.31□□□□□ -0.92
SMC4-225ENST00000497203 CDHR5Q9HBB8 845 aa9.31□□□□□ -0.92
SMC4-225ENST00000497203 RBM26Q5T8P6 1007 aaKnown RBP9.3□□□□□ -0.92
SMC4-225ENST00000497203 LCE2BO14633 110 aa9.29□□□□□ -0.92
SMC4-225ENST00000497203 SMYD5Q6GMV2 418 aa9.29□□□□□ -0.92
SMC4-225ENST00000497203 PPP1R3GB7ZBB8 358 aa9.28□□□□□ -0.92
SMC4-225ENST00000497203 WNT2BQ93097 391 aa9.27□□□□□ -0.93
SMC4-225ENST00000497203 MRPL50Q8N5N7 158 aaKnown RBP9.26□□□□□ -0.93
SMC4-225ENST00000497203 NUTM2FA1L443 756 aa9.25□□□□□ -0.93
SMC4-225ENST00000497203 NPDC1Q9NQX5 325 aaPredicted RBP9.25□□□□□ -0.93
SMC4-225ENST00000497203 GOLGA8CPA6NN73 597 aa9.24□□□□□ -0.93
SMC4-225ENST00000497203 PROX2Q3B8N5 592 aa9.24□□□□□ -0.93
SMC4-225ENST00000497203 NBPF3Q9H094 633 aa9.24□□□□□ -0.93
SMC4-225ENST00000497203 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.23□□□□□ -0.93
SMC4-225ENST00000497203 TULP1O00294 542 aaPredicted RBP9.22□□□□□ -0.93
SMC4-225ENST00000497203 PTGDRQ13258 359 aa9.22□□□□□ -0.93
SMC4-225ENST00000497203 ITGBL1O95965 494 aaPredicted RBP9.21□□□□□ -0.94
SMC4-225ENST00000497203 CERKQ8TCT0 537 aa9.21□□□□□ -0.94
SMC4-225ENST00000497203 GPR37O15354 613 aa9.2□□□□□ -0.94
SMC4-225ENST00000497203 PRSS12P56730 875 aa9.2□□□□□ -0.94
SMC4-225ENST00000497203 LMOD2Q6P5Q4 547 aa9.2□□□□□ -0.94
SMC4-225ENST00000497203 CDCA7LQ96GN5 454 aa9.2□□□□□ -0.94
SMC4-225ENST00000497203 FAM198AQ9UFP1 575 aa9.19□□□□□ -0.94
SMC4-225ENST00000497203 TSKSQ9UJT2 592 aa9.19□□□□□ -0.94
SMC4-225ENST00000497203 TRIM6-TRIM34B2RNG4 842 aa9.18□□□□□ -0.94
SMC4-225ENST00000497203 FCHSD2O94868 740 aa9.18□□□□□ -0.94
SMC4-225ENST00000497203 TRAF7Q6Q0C0 670 aa9.18□□□□□ -0.94
SMC4-225ENST00000497203 GPIHBP1Q8IV16 184 aa9.18□□□□□ -0.94
SMC4-225ENST00000497203 PADI6Q6TGC4 694 aa9.17□□□□□ -0.94
SMC4-225ENST00000497203 KIAA1468Q9P260 1216 aa9.17□□□□□ -0.94
SMC4-225ENST00000497203 RABGEF1Q9UJ41 708 aa9.16□□□□□ -0.94
SMC4-225ENST00000497203 ONECUT3O60422 494 aaPredicted RBP9.15□□□□□ -0.94
SMC4-225ENST00000497203 TTC13Q8NBP0 860 aa9.15□□□□□ -0.94
SMC4-225ENST00000497203 ANKK1Q8NFD2 765 aa9.15□□□□□ -0.94
SMC4-225ENST00000497203 C3orf80F5H4A9 247 aa9.14□□□□□ -0.95
SMC4-225ENST00000497203 RBM27Q9P2N5 1060 aaKnown RBP9.14□□□□□ -0.95
SMC4-225ENST00000497203 FECHP22830 423 aa9.13□□□□□ -0.95
SMC4-225ENST00000497203 HIC1Q14526 733 aa9.13□□□□□ -0.95
SMC4-225ENST00000497203 GNPATO15228 680 aa9.12□□□□□ -0.95
SMC4-225ENST00000497203 PACS2Q86VP3 889 aa9.12□□□□□ -0.95
SMC4-225ENST00000497203 SEPT9Q9UHD8 586 aaPredicted RBP9.12□□□□□ -0.95
SMC4-225ENST00000497203 SMAPO00193 183 aa9.11□□□□□ -0.95
SMC4-225ENST00000497203 NYAP1Q6ZVC0 841 aa9.11□□□□□ -0.95
SMC4-225ENST00000497203 LAPTM4BQ86VI4 370 aa9.11□□□□□ -0.95
SMC4-225ENST00000497203 SOWAHBA6NEL2 793 aa9.1□□□□□ -0.95
SMC4-225ENST00000497203 BCAMP50895 628 aa9.1□□□□□ -0.95
SMC4-225ENST00000497203 LAPTM4AQ15012 233 aa9.1□□□□□ -0.95
SMC4-225ENST00000497203 FAM161AQ3B820 660 aa9.09□□□□□ -0.95
SMC4-225ENST00000497203 ZC3H15Q8WU90 426 aaKnown RBP9.09□□□□□ -0.95
SMC4-225ENST00000497203 TATDN2Q93075 761 aa9.09□□□□□ -0.95
SMC4-225ENST00000497203 PNMA3Q9UL41 463 aa9.09□□□□□ -0.95
SMC4-225ENST00000497203 NBPF26B4DH59 902 aa9.08□□□□□ -0.96
SMC4-225ENST00000497203 NUDT18Q6ZVK8 323 aa9.08□□□□□ -0.96
SMC4-225ENST00000497203 ADGRG1Q9Y653 693 aa9.08□□□□□ -0.96
SMC4-225ENST00000497203 FAM98CQ17RN3 349 aaKnown RBP9.06□□□□□ -0.96
SMC4-225ENST00000497203 ZNF775Q96BV0 537 aaPredicted RBP9.06□□□□□ -0.96
SMC4-225ENST00000497203 ZFRQ96KR1 1074 aaKnown RBP9.05□□□□□ -0.96
SMC4-225ENST00000497203 EYA1Q99502 592 aa9.05□□□□□ -0.96
SMC4-225ENST00000497203 ZMYND10O75800 440 aa9.04□□□□□ -0.96
SMC4-225ENST00000497203 KCNC4Q03721 635 aa9.04□□□□□ -0.96
SMC4-225ENST00000497203 WBP1LQ9NX94 342 aa9.04□□□□□ -0.96
SMC4-225ENST00000497203 GFRA3O60609 400 aa9.02□□□□□ -0.97
SMC4-225ENST00000497203 MAP2K5Q13163 448 aa9.02□□□□□ -0.97
SMC4-225ENST00000497203 ZNF787Q6DD87 383 aa9.02□□□□□ -0.97
SMC4-225ENST00000497203 BARGINQ6ZT62 677 aa9.02□□□□□ -0.97
SMC4-225ENST00000497203 RBM46Q8TBY0 533 aaKnown RBP9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms