RNA–Protein interactions for RNA: ENST00000496296.5

FGFR1-223, Transcript of fibroblast growth factor receptor 1, human

TSL 1 (best)

Gene FGFR1, Length 1,898 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
FGFR1-223	ENST00000496296	PPP1R15A	O75807	674 aa	Predicted RBP	30.23	■■■□□ 2.43
FGFR1-223	ENST00000496296	MLH3	Q9UHC1	1453 aa		30.22	■■■□□ 2.43
FGFR1-223	ENST00000496296	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	30.22	■■■□□ 2.43	3e-7	■□□□□ 10.7
FGFR1-223	ENST00000496296	KIDINS220	Q9ULH0	1771 aa		30.22	■■■□□ 2.43
FGFR1-223	ENST00000496296	TEX14	Q8IWB6	1497 aa		30.21	■■■□□ 2.43
FGFR1-223	ENST00000496296	DHX29	Q7Z478	1369 aa	Known RBP	30.2	■■■□□ 2.43
FGFR1-223	ENST00000496296	MAGI2	Q86UL8	1455 aa		30.2	■■■□□ 2.43
FGFR1-223	ENST00000496296	HECW2	Q9P2P5	1572 aa		30.19	■■■□□ 2.42
FGFR1-223	ENST00000496296	RPRD2	Q5VT52	1461 aa	Known RBP	30.18	■■■□□ 2.42
FGFR1-223	ENST00000496296	IQGAP3	Q86VI3	1631 aa		30.18	■■■□□ 2.42
FGFR1-223	ENST00000496296	EIF2AK4	Q9P2K8	1649 aa	Known RBP	30.16	■■■□□ 2.42
FGFR1-223	ENST00000496296	RAPGEF3	O95398	923 aa		30.15	■■■□□ 2.42
FGFR1-223	ENST00000496296	COL17A1	Q9UMD9	1497 aa	Predicted RBP	30.15	■■■□□ 2.42
FGFR1-223	ENST00000496296	A2M	P01023	1474 aa		30.12	■■■□□ 2.41
FGFR1-223	ENST00000496296	RICTOR	Q6R327	1708 aa		30.11	■■■□□ 2.41
FGFR1-223	ENST00000496296	DEPDC5	O75140	1603 aa		30.1	■■■□□ 2.41
FGFR1-223	ENST00000496296	KIF3B	O15066	747 aa		30.1	■■■□□ 2.41
FGFR1-223	ENST00000496296	KANK1	Q14678	1352 aa		30.1	■■■□□ 2.41
FGFR1-223	ENST00000496296	ABCA6	Q8N139	1617 aa		30.03	■■■□□ 2.4
FGFR1-223	ENST00000496296	L3MBTL2	Q969R5	705 aa		30.03	■■■□□ 2.4
FGFR1-223	ENST00000496296	PRDM15	P57071	1507 aa	Predicted RBP	30.01	■■■□□ 2.39
FGFR1-223	ENST00000496296	FRMPD1	Q5SYB0	1578 aa		30	■■■□□ 2.39
FGFR1-223	ENST00000496296	ZMYM4	Q5VZL5	1548 aa		29.99	■■■□□ 2.39
FGFR1-223	ENST00000496296	VWDE	Q8N2E2	1590 aa		29.98	■■■□□ 2.39
FGFR1-223	ENST00000496296	DIP2C	Q9Y2E4	1556 aa		29.98	■■■□□ 2.39
FGFR1-223	ENST00000496296	CCDC144A	A2RUR9	1427 aa		29.96	■■■□□ 2.39
FGFR1-223	ENST00000496296	RNF17	Q9BXT8	1623 aa	Known RBP	29.95	■■■□□ 2.39
FGFR1-223	ENST00000496296	TET3	O43151	1660 aa		29.94	■■■□□ 2.38
FGFR1-223	ENST00000496296	MROH1	Q8NDA8	1641 aa		29.94	■■■□□ 2.38
FGFR1-223	ENST00000496296	BCORL1	Q5H9F3	1711 aa		29.94	■■■□□ 2.38
FGFR1-223	ENST00000496296	ATP10A	O60312	1499 aa		29.93	■■■□□ 2.38
FGFR1-223	ENST00000496296	YEATS2	Q9ULM3	1422 aa		29.91	■■■□□ 2.38
FGFR1-223	ENST00000496296	PLA2R1	Q13018	1463 aa		29.9	■■■□□ 2.38
FGFR1-223	ENST00000496296		E9PCH4	1651 aa		29.89	■■■□□ 2.38
FGFR1-223	ENST00000496296	GGT6	Q6P531	493 aa		29.87	■■■□□ 2.37
FGFR1-223	ENST00000496296	LMTK2	Q8IWU2	1503 aa		29.86	■■■□□ 2.37
FGFR1-223	ENST00000496296	YTHDC1	Q96MU7	727 aa	Known RBP	29.85	■■■□□ 2.37
FGFR1-223	ENST00000496296	EFCAB6	Q5THR3	1501 aa		29.81	■■■□□ 2.36
FGFR1-223	ENST00000496296	PTPRT	O14522	1441 aa		29.81	■■■□□ 2.36
FGFR1-223	ENST00000496296	TRPM2	O94759	1503 aa		29.8	■■■□□ 2.36
FGFR1-223	ENST00000496296	GTF3C3	Q9Y5Q9	886 aa		29.79	■■■□□ 2.36
FGFR1-223	ENST00000496296	SPHKAP	Q2M3C7	1700 aa		29.79	■■■□□ 2.36
FGFR1-223	ENST00000496296	WASHC2C	Q9Y4E1	1318 aa		29.79	■■■□□ 2.36
FGFR1-223	ENST00000496296	CEP152	O94986	1710 aa		29.77	■■■□□ 2.36
FGFR1-223	ENST00000496296	RERE	Q9P2R6	1566 aa		29.76	■■■□□ 2.36
FGFR1-223	ENST00000496296	NBPF8	Q3BBV2	869 aa		29.76	■■■□□ 2.36
FGFR1-223	ENST00000496296	DCAF11	Q8TEB1	546 aa		29.74	■■■□□ 2.35
FGFR1-223	ENST00000496296	ABCC3	O15438	1527 aa		29.73	■■■□□ 2.35
FGFR1-223	ENST00000496296	DDX10	Q13206	875 aa	Known RBP	29.72	■■■□□ 2.35
FGFR1-223	ENST00000496296	UHRF1BP1	Q6BDS2	1440 aa		29.72	■■■□□ 2.35
FGFR1-223	ENST00000496296	ZNF326	Q5BKZ1	582 aa	Known RBP	29.71	■■■□□ 2.35
FGFR1-223	ENST00000496296	RGL3	Q3MIN7	710 aa		29.7	■■■□□ 2.35
FGFR1-223	ENST00000496296	ZC3H13	Q5T200	1668 aa	Known RBP	29.7	■■■□□ 2.35
FGFR1-223	ENST00000496296	AGL	P35573	1532 aa		29.7	■■■□□ 2.34
FGFR1-223	ENST00000496296	PELP1	Q8IZL8	1130 aa	Known RBP	29.69	■■■□□ 2.34
FGFR1-223	ENST00000496296	KDM2A	Q9Y2K7	1162 aa		29.69	■■■□□ 2.34
FGFR1-223	ENST00000496296	ARHGEF40	Q8TER5	1519 aa		29.69	■■■□□ 2.34
FGFR1-223	ENST00000496296	EIF4G2	P78344	907 aa	Known RBP eCLIP	29.68	■■■□□ 2.34
FGFR1-223	ENST00000496296	CLTCL1	P53675	1640 aa		29.66	■■■□□ 2.34
FGFR1-223	ENST00000496296	CAMSAP1	Q5T5Y3	1602 aa		29.66	■■■□□ 2.34
FGFR1-223	ENST00000496296	NPAT	Q14207	1427 aa		29.65	■■■□□ 2.34
FGFR1-223	ENST00000496296	KDM4F	A0A1W2PPD8	638 aa		29.64	■■■□□ 2.34
FGFR1-223	ENST00000496296	SPATA31E1	Q6ZUB1	1445 aa		29.64	■■■□□ 2.33
FGFR1-223	ENST00000496296	PPP6R1	Q9UPN7	881 aa		29.63	■■■□□ 2.33
FGFR1-223	ENST00000496296	HIRIP3	Q9BW71	556 aa	Predicted RBP	29.63	■■■□□ 2.33
FGFR1-223	ENST00000496296	ARHGAP31	Q2M1Z3	1444 aa		29.61	■■■□□ 2.33
FGFR1-223	ENST00000496296	HSPA5	P11021	654 aa	Known RBP	29.61	■■■□□ 2.33
FGFR1-223	ENST00000496296	CNTLN	Q9NXG0	1405 aa		29.61	■■■□□ 2.33
FGFR1-223	ENST00000496296	RALGAPB	Q86X10	1494 aa		29.6	■■■□□ 2.33
FGFR1-223	ENST00000496296	CCER2	I3L3R5	266 aa		29.59	■■■□□ 2.33
FGFR1-223	ENST00000496296	POLR1A	O95602	1720 aa	Predicted RBP	29.59	■■■□□ 2.33
FGFR1-223	ENST00000496296	NEURL4	Q96JN8	1562 aa		29.59	■■■□□ 2.33
FGFR1-223	ENST00000496296	STAC3	Q96MF2	364 aa		29.59	■■■□□ 2.33
FGFR1-223	ENST00000496296	PRAG1	Q86YV5	1406 aa		29.56	■■■□□ 2.32
FGFR1-223	ENST00000496296	AEBP2	Q6ZN18	517 aa	Predicted RBP	29.54	■■■□□ 2.32
FGFR1-223	ENST00000496296	KIF1B	O60333	1816 aa		29.53	■■■□□ 2.32
FGFR1-223	ENST00000496296	UGGT1	Q9NYU2	1555 aa		29.53	■■■□□ 2.32
FGFR1-223	ENST00000496296	SIGLEC1	Q9BZZ2	1709 aa		29.52	■■■□□ 2.32
FGFR1-223	ENST00000496296	NOS1	P29475	1434 aa		29.52	■■■□□ 2.32
FGFR1-223	ENST00000496296	ANP32C	O43423	234 aa		29.5	■■■□□ 2.31
FGFR1-223	ENST00000496296	CARD11	Q9BXL7	1154 aa		29.5	■■■□□ 2.31
FGFR1-223	ENST00000496296	ROCK2	O75116	1388 aa	Known RBP	29.48	■■■□□ 2.31
FGFR1-223	ENST00000496296	CFAP65	Q6ZU64	1925 aa	Known RBP	29.48	■■■□□ 2.31
FGFR1-223	ENST00000496296	TRPM1	Q7Z4N2	1603 aa		29.47	■■■□□ 2.31
FGFR1-223	ENST00000496296	USP47	Q96K76	1375 aa		29.47	■■■□□ 2.31
FGFR1-223	ENST00000496296	WASHC2A	Q641Q2	1341 aa		29.46	■■■□□ 2.31
FGFR1-223	ENST00000496296	MLEC	Q14165	292 aa		29.46	■■■□□ 2.31
FGFR1-223	ENST00000496296	ARID4B	Q4LE39	1312 aa	Predicted RBP	29.45	■■■□□ 2.31
FGFR1-223	ENST00000496296	ESF1	Q9H501	851 aa	Known RBP	29.44	■■■□□ 2.3
FGFR1-223	ENST00000496296	CHGA	P10645	457 aa	Known RBP	29.43	■■■□□ 2.3
FGFR1-223	ENST00000496296	ADGRB3	O60242	1522 aa		29.43	■■■□□ 2.3
FGFR1-223	ENST00000496296	SYNM	O15061	1565 aa		29.42	■■■□□ 2.3
FGFR1-223	ENST00000496296	SLC52A1	Q9NWF4	448 aa		29.42	■■■□□ 2.3
FGFR1-223	ENST00000496296	CLTC	Q00610	1675 aa	Known RBP	29.42	■■■□□ 2.3
FGFR1-223	ENST00000496296	PREX1	Q8TCU6	1659 aa		29.41	■■■□□ 2.3
FGFR1-223	ENST00000496296	PIK3C2B	O00750	1634 aa		29.4	■■■□□ 2.3
FGFR1-223	ENST00000496296	MADD	Q8WXG6	1647 aa		29.39	■■■□□ 2.3
FGFR1-223	ENST00000496296	MROH2A	A6NES4	1674 aa		29.38	■■■□□ 2.29
FGFR1-223	ENST00000496296	GPRASP1	Q5JY77	1395 aa		29.38	■■■□□ 2.29
FGFR1-223	ENST00000496296	CCDC7	Q96M83	1385 aa		29.38	■■■□□ 2.29

Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms