RNA–Protein interactions for RNA: ENST00000496026.1

HDAC9-226, Transcript of histone deacetylase 9, humanhuman

TSL 3

Gene HDAC9, Length 860 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-226ENST00000496026 ADAMTSL3P82987 1691 aa22.13■■□□□ 1.13
HDAC9-226ENST00000496026 MADDQ8WXG6 1647 aa22.1■■□□□ 1.13
HDAC9-226ENST00000496026 RNF17Q9BXT8 1623 aaKnown RBP22.09■■□□□ 1.13
HDAC9-226ENST00000496026 WASHC2CQ9Y4E1 1318 aa22.09■■□□□ 1.13
HDAC9-226ENST00000496026 KANK1Q14678 1352 aa22.09■■□□□ 1.13
HDAC9-226ENST00000496026 GCC2Q8IWJ2 1684 aa22.07■■□□□ 1.12
HDAC9-226ENST00000496026 CNTLNQ9NXG0 1405 aa22.07■■□□□ 1.12
HDAC9-226ENST00000496026 FER1L4A9Z1Z3 1794 aa22.07■■□□□ 1.12
HDAC9-226ENST00000496026 PRDM15P57071 1507 aaPredicted RBP22.05■■□□□ 1.12
HDAC9-226ENST00000496026 KDM5DQ9BY66 1539 aa22.05■■□□□ 1.12
HDAC9-226ENST00000496026 SETD5Q9C0A6 1442 aa22.05■■□□□ 1.12
HDAC9-226ENST00000496026 RIMS1Q86UR5 1692 aaKnown RBP22.04■■□□□ 1.12
HDAC9-226ENST00000496026 PLPPR3Q6T4P5 718 aa22.04■■□□□ 1.12
HDAC9-226ENST00000496026 MROH1Q8NDA8 1641 aa22.04■■□□□ 1.12
HDAC9-226ENST00000496026 DEPDC5O75140 1603 aa22.03■■□□□ 1.12
HDAC9-226ENST00000496026 FAM135AQ9P2D6 1515 aa22.03■■□□□ 1.12
HDAC9-226ENST00000496026 PTPRMP28827 1452 aa22.03■■□□□ 1.12
HDAC9-226ENST00000496026 TRIM52Q96A61 297 aa22.01■■□□□ 1.11
HDAC9-226ENST00000496026 CLTCQ00610 1675 aaKnown RBP22.01■■□□□ 1.11
HDAC9-226ENST00000496026 ABCC3O15438 1527 aa22.01■■□□□ 1.11
HDAC9-226ENST00000496026 NUP155O75694 1391 aa22■■□□□ 1.11
HDAC9-226ENST00000496026 ZMYM3Q14202 1370 aa22■■□□□ 1.11
HDAC9-226ENST00000496026 UNC13BO14795 1591 aa21.99■■□□□ 1.11
HDAC9-226ENST00000496026 CEBPAP49715 358 aaPredicted RBP21.99■■□□□ 1.11
HDAC9-226ENST00000496026 RAB3GAP2Q9H2M9 1393 aa21.98■■□□□ 1.11
HDAC9-226ENST00000496026 AEBP2Q6ZN18 517 aaPredicted RBP21.97■■□□□ 1.11
HDAC9-226ENST00000496026 ZC3H13Q5T200 1668 aaKnown RBP21.97■■□□□ 1.11
HDAC9-226ENST00000496026 VWDEQ8N2E2 1590 aa21.96■■□□□ 1.11
HDAC9-226ENST00000496026 MROH2AA6NES4 1674 aa21.95■■□□□ 1.1
HDAC9-226ENST00000496026 ACIN1Q9UKV3 1341 aaKnown RBP21.95■■□□□ 1.1
HDAC9-226ENST00000496026 LMTK2Q8IWU2 1503 aa21.94■■□□□ 1.1
HDAC9-226ENST00000496026 CEP152O94986 1710 aa21.94■■□□□ 1.1
HDAC9-226ENST00000496026 C3P01024 1663 aa21.91■■□□□ 1.1
HDAC9-226ENST00000496026 CAMSAP1Q5T5Y3 1602 aa21.91■■□□□ 1.1
HDAC9-226ENST00000496026 IQGAP3Q86VI3 1631 aa21.91■■□□□ 1.1
HDAC9-226ENST00000496026 PZPP20742 1482 aa21.9■■□□□ 1.1
HDAC9-226ENST00000496026 HRCP23327 699 aa21.89■■□□□ 1.09
HDAC9-226ENST00000496026 FBXO31Q5XUX0 539 aaPredicted RBP21.89■■□□□ 1.09
HDAC9-226ENST00000496026 ARHGAP31Q2M1Z3 1444 aa21.89■■□□□ 1.09
HDAC9-226ENST00000496026 SLC4A1APQ9BWU0 796 aaKnown RBP21.88■■□□□ 1.09
HDAC9-226ENST00000496026 PCGF6Q9BYE7 350 aa21.88■■□□□ 1.09
HDAC9-226ENST00000496026 NPATQ14207 1427 aa21.88■■□□□ 1.09
HDAC9-226ENST00000496026 EFCAB6Q5THR3 1501 aa21.87■■□□□ 1.09
HDAC9-226ENST00000496026 TET3O43151 1660 aa21.86■■□□□ 1.09
HDAC9-226ENST00000496026 PKD2Q13563 968 aa21.83■■□□□ 1.09
HDAC9-226ENST00000496026 MPHOSPH9Q99550 1183 aa21.83■■□□□ 1.09
HDAC9-226ENST00000496026 TNRQ92752 1358 aa21.83■■□□□ 1.08
HDAC9-226ENST00000496026 ERVK-7P63135 1459 aa21.83■■□□□ 1.08
HDAC9-226ENST00000496026 RPRD2Q5VT52 1461 aaKnown RBP21.83■■□□□ 1.08
HDAC9-226ENST00000496026 SPATA31D1Q6ZQQ2 1576 aa21.78■■□□□ 1.08
HDAC9-226ENST00000496026 E9PCH4 1651 aa21.78■■□□□ 1.08
HDAC9-226ENST00000496026 UHRF1BP1Q6BDS2 1440 aa21.77■■□□□ 1.08
HDAC9-226ENST00000496026 PREX1Q8TCU6 1659 aa21.76■■□□□ 1.07
HDAC9-226ENST00000496026 NOS1P29475 1434 aa21.76■■□□□ 1.07
HDAC9-226ENST00000496026 FOXD1Q16676 465 aa21.75■■□□□ 1.07
HDAC9-226ENST00000496026 NLRP1Q9C000 1473 aa21.72■■□□□ 1.07
HDAC9-226ENST00000496026 CFAP65Q6ZU64 1925 aaKnown RBP21.72■■□□□ 1.07
HDAC9-226ENST00000496026 MYO3AQ8NEV4 1616 aa21.71■■□□□ 1.07
HDAC9-226ENST00000496026 SLC52A1Q9NWF4 448 aa21.71■■□□□ 1.07
HDAC9-226ENST00000496026 SYNMO15061 1565 aa21.7■■□□□ 1.06
HDAC9-226ENST00000496026 SETD1BQ9UPS6 1966 aaKnown RBP21.69■■□□□ 1.06
HDAC9-226ENST00000496026 IDI1Q13907 227 aa21.69■■□□□ 1.06
HDAC9-226ENST00000496026 PTPRTO14522 1441 aa21.69■■□□□ 1.06
HDAC9-226ENST00000496026 A2ML1A8K2U0 1454 aa21.69■■□□□ 1.06
HDAC9-226ENST00000496026 LMTK3Q96Q04 1460 aa21.69■■□□□ 1.06
HDAC9-226ENST00000496026 STAG3Q9UJ98 1225 aa21.68■■□□□ 1.06
HDAC9-226ENST00000496026 CEP170BQ9Y4F5 1589 aaPredicted RBP21.67■■□□□ 1.06
HDAC9-226ENST00000496026 SPHKAPQ2M3C7 1700 aa21.66■■□□□ 1.06
HDAC9-226ENST00000496026 PLA2R1Q13018 1463 aa21.64■■□□□ 1.06
HDAC9-226ENST00000496026 CHGAP10645 457 aaKnown RBP21.64■■□□□ 1.05
HDAC9-226ENST00000496026 HSPA2P54652 639 aa21.64■■□□□ 1.05
HDAC9-226ENST00000496026 UGGT1Q9NYU2 1555 aa21.64■■□□□ 1.05
HDAC9-226ENST00000496026 TRPM2O94759 1503 aa21.64■■□□□ 1.05
HDAC9-226ENST00000496026 THEMISQ8N1K5 641 aaPredicted RBP21.63■■□□□ 1.05
HDAC9-226ENST00000496026 ZNF142P52746 1687 aaPredicted RBP21.63■■□□□ 1.05
HDAC9-226ENST00000496026 PIK3C2BO00750 1634 aa21.61■■□□□ 1.05
HDAC9-226ENST00000496026 CCDC144AA2RUR9 1427 aa21.61■■□□□ 1.05
HDAC9-226ENST00000496026 DHX57Q6P158 1386 aaKnown RBP21.6■■□□□ 1.05
HDAC9-226ENST00000496026 ADGRB3O60242 1522 aa21.58■■□□□ 1.04
HDAC9-226ENST00000496026 ANKRD30BQ9BXX2 1392 aa21.58■■□□□ 1.04
HDAC9-226ENST00000496026 CLTCL1P53675 1640 aa21.58■■□□□ 1.04
HDAC9-226ENST00000496026 UBR1Q8IWV7 1749 aa21.55■■□□□ 1.04
HDAC9-226ENST00000496026 ZNF326Q5BKZ1 582 aaKnown RBP21.54■■□□□ 1.04
HDAC9-226ENST00000496026 TMEM131LA2VDJ0 1609 aa21.52■■□□□ 1.04
HDAC9-226ENST00000496026 ANKLE2Q86XL3 938 aa21.52■■□□□ 1.04
HDAC9-226ENST00000496026 KDM5AP29375 1690 aaKnown RBP21.52■■□□□ 1.04
HDAC9-226ENST00000496026 TMEM2Q9UHN6 1383 aa21.51■■□□□ 1.03
HDAC9-226ENST00000496026 EID1Q9Y6B2 187 aa21.51■■□□□ 1.03
HDAC9-226ENST00000496026 NCKAP5LQ9HCH0 1330 aa21.5■■□□□ 1.03
HDAC9-226ENST00000496026 HDGFP51858 240 aaKnown RBP21.49■■□□□ 1.03
HDAC9-226ENST00000496026 TXNDC2Q86VQ3 553 aa21.49■■□□□ 1.03
HDAC9-226ENST00000496026 ARHGAP23Q9P227 1491 aa21.48■■□□□ 1.03
HDAC9-226ENST00000496026 RGL3Q3MIN7 710 aa21.48■■□□□ 1.03
HDAC9-226ENST00000496026 SLIT1O75093 1534 aa21.48■■□□□ 1.03
HDAC9-226ENST00000496026 RIMS2Q9UQ26 1411 aa21.47■■□□□ 1.03
HDAC9-226ENST00000496026 KIF1BO60333 1816 aa21.46■■□□□ 1.03
HDAC9-226ENST00000496026 PPP1R15AO75807 674 aaPredicted RBP21.46■■□□□ 1.03
HDAC9-226ENST00000496026 ABCF1Q8NE71 845 aaKnown RBP eCLIP21.46■■□□□ 1.03
HDAC9-226ENST00000496026 LTKP29376 864 aa21.45■■□□□ 1.02
HDAC9-226ENST00000496026 SCAF11Q99590 1463 aaKnown RBP21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms