RNA–Protein interactions for RNA: ENST00000495755.1

VPS52-221, Transcript of VPS52, GARP complex subunit, human

TSL 5

Gene VPS52, Length 453 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS52-221	ENST00000495755	PTPRT	O14522	1441 aa		11.26	□□□□□ -0.61
VPS52-221	ENST00000495755	NCOA1	Q15788	1441 aa		11.26	□□□□□ -0.61
VPS52-221	ENST00000495755	TCOF1	Q13428	1488 aa	Known RBP	11.25	□□□□□ -0.61
VPS52-221	ENST00000495755	KDM5D	Q9BY66	1539 aa		11.25	□□□□□ -0.61
VPS52-221	ENST00000495755	FBXO31	Q5XUX0	539 aa	Predicted RBP	11.25	□□□□□ -0.61
VPS52-221	ENST00000495755	SHANK2	Q9UPX8	1470 aa		11.25	□□□□□ -0.61
VPS52-221	ENST00000495755	CERK	Q8TCT0	537 aa		11.24	□□□□□ -0.61
VPS52-221	ENST00000495755	PZP	P20742	1482 aa		11.24	□□□□□ -0.61
VPS52-221	ENST00000495755	RNF17	Q9BXT8	1623 aa	Known RBP	11.24	□□□□□ -0.61
VPS52-221	ENST00000495755	DAPK1	P53355	1430 aa		11.23	□□□□□ -0.61
VPS52-221	ENST00000495755	DUOX2	Q9NRD8	1548 aa		11.23	□□□□□ -0.61
VPS52-221	ENST00000495755	CAMSAP1	Q5T5Y3	1602 aa		11.23	□□□□□ -0.61
VPS52-221	ENST00000495755	MYO3A	Q8NEV4	1616 aa		11.23	□□□□□ -0.61
VPS52-221	ENST00000495755	TNR	Q92752	1358 aa		11.22	□□□□□ -0.61
VPS52-221	ENST00000495755	NCKAP5L	Q9HCH0	1330 aa		11.22	□□□□□ -0.61
VPS52-221	ENST00000495755	KIF15	Q9NS87	1388 aa		11.22	□□□□□ -0.61
VPS52-221	ENST00000495755	RRP7BP	Q9NSQ0	103 aa		11.22	□□□□□ -0.61
VPS52-221	ENST00000495755	EIF2AK4	Q9P2K8	1649 aa	Known RBP	11.22	□□□□□ -0.61
VPS52-221	ENST00000495755	CEP170B	Q9Y4F5	1589 aa	Predicted RBP	11.22	□□□□□ -0.61
VPS52-221	ENST00000495755	ZNF142	P52746	1687 aa	Predicted RBP	11.21	□□□□□ -0.61
VPS52-221	ENST00000495755	DNMT1	P26358	1616 aa	Known RBP	11.21	□□□□□ -0.61
VPS52-221	ENST00000495755	A2ML1	A8K2U0	1454 aa		11.21	□□□□□ -0.61
VPS52-221	ENST00000495755	PLA2R1	Q13018	1463 aa		11.21	□□□□□ -0.61
VPS52-221	ENST00000495755	CROCC2	H7BZ55	1655 aa		11.2	□□□□□ -0.62
VPS52-221	ENST00000495755	MROH1	Q8NDA8	1641 aa		11.2	□□□□□ -0.62
VPS52-221	ENST00000495755	ABCC3	O15438	1527 aa		11.2	□□□□□ -0.62
VPS52-221	ENST00000495755	PKD2	Q13563	968 aa		11.2	□□□□□ -0.62
VPS52-221	ENST00000495755	ERBIN	Q96RT1	1412 aa		11.19	□□□□□ -0.62
VPS52-221	ENST00000495755	CHIC2	Q9UKJ5	165 aa		11.19	□□□□□ -0.62
VPS52-221	ENST00000495755	ANKRD30A	Q9BXX3	1397 aa		11.18	□□□□□ -0.62
VPS52-221	ENST00000495755	ZC3H13	Q5T200	1668 aa	Known RBP	11.17	□□□□□ -0.62
VPS52-221	ENST00000495755	FAM50A	Q14320	339 aa	Known RBP	11.17	□□□□□ -0.62
VPS52-221	ENST00000495755	NLRP1	Q9C000	1473 aa		11.17	□□□□□ -0.62
VPS52-221	ENST00000495755	PRDM15	P57071	1507 aa	Predicted RBP	11.16	□□□□□ -0.62
VPS52-221	ENST00000495755	ADGRL2	O95490	1459 aa		11.16	□□□□□ -0.62
VPS52-221	ENST00000495755	ARHGAP31	Q2M1Z3	1444 aa		11.16	□□□□□ -0.62
VPS52-221	ENST00000495755	LTBP4	Q8N2S1	1624 aa		11.16	□□□□□ -0.62
VPS52-221	ENST00000495755	SPATA31D1	Q6ZQQ2	1576 aa		11.16	□□□□□ -0.62
VPS52-221	ENST00000495755	ERVK-7	P63135	1459 aa		11.15	□□□□□ -0.62
VPS52-221	ENST00000495755	THEMIS	Q8N1K5	641 aa	Predicted RBP	11.15	□□□□□ -0.62
VPS52-221	ENST00000495755	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.15	□□□□□ -0.62	3e-7	■■□□□ 12.8
VPS52-221	ENST00000495755	DEPDC5	O75140	1603 aa		11.14	□□□□□ -0.63
VPS52-221	ENST00000495755	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	11.14	□□□□□ -0.63
VPS52-221	ENST00000495755	CEP152	O94986	1710 aa		11.13	□□□□□ -0.63
VPS52-221	ENST00000495755	ANKLE2	Q86XL3	938 aa		11.13	□□□□□ -0.63
VPS52-221	ENST00000495755	KANK1	Q14678	1352 aa		11.13	□□□□□ -0.63
VPS52-221	ENST00000495755	ZNF335	Q9H4Z2	1342 aa	Predicted RBP	11.12	□□□□□ -0.63
VPS52-221	ENST00000495755	UGGT1	Q9NYU2	1555 aa		11.12	□□□□□ -0.63
VPS52-221	ENST00000495755	LMTK2	Q8IWU2	1503 aa		11.12	□□□□□ -0.63
VPS52-221	ENST00000495755	VWDE	Q8N2E2	1590 aa		11.11	□□□□□ -0.63
VPS52-221	ENST00000495755	PPARGC1B	Q86YN6	1023 aa	Known RBP	11.11	□□□□□ -0.63
VPS52-221	ENST00000495755	IQSEC2	Q5JU85	1478 aa		11.11	□□□□□ -0.63
VPS52-221	ENST00000495755	NEURL4	Q96JN8	1562 aa		11.11	□□□□□ -0.63
VPS52-221	ENST00000495755	ANKRD50	Q9ULJ7	1429 aa		11.1	□□□□□ -0.63
VPS52-221	ENST00000495755	MED14	O60244	1454 aa		11.1	□□□□□ -0.63
VPS52-221	ENST00000495755	ROCK1	Q13464	1354 aa		11.09	□□□□□ -0.63
VPS52-221	ENST00000495755	POLR1A	O95602	1720 aa	Predicted RBP	11.09	□□□□□ -0.63
VPS52-221	ENST00000495755	CFAP65	Q6ZU64	1925 aa	Known RBP	11.08	□□□□□ -0.64
VPS52-221	ENST00000495755	NPHP4	O75161	1426 aa	Predicted RBP	11.08	□□□□□ -0.64
VPS52-221	ENST00000495755	UBR1	Q8IWV7	1749 aa		11.06	□□□□□ -0.64
VPS52-221	ENST00000495755	EFCAB6	Q5THR3	1501 aa		11.06	□□□□□ -0.64
VPS52-221	ENST00000495755	IDI1	Q13907	227 aa		11.06	□□□□□ -0.64
VPS52-221	ENST00000495755	NOS1	P29475	1434 aa		11.06	□□□□□ -0.64
VPS52-221	ENST00000495755	ARHGAP23	Q9P227	1491 aa		11.06	□□□□□ -0.64
VPS52-221	ENST00000495755	SLIT1	O75093	1534 aa		11.05	□□□□□ -0.64
VPS52-221	ENST00000495755	LTK	P29376	864 aa		11.05	□□□□□ -0.64
VPS52-221	ENST00000495755	ITGAE	P38570	1179 aa		11.04	□□□□□ -0.64
VPS52-221	ENST00000495755	TXNDC2	Q86VQ3	553 aa		11.04	□□□□□ -0.64
VPS52-221	ENST00000495755	SLC52A1	Q9NWF4	448 aa		11.04	□□□□□ -0.64
VPS52-221	ENST00000495755	RPRD2	Q5VT52	1461 aa	Known RBP	11.04	□□□□□ -0.64
VPS52-221	ENST00000495755	TMEM2	Q9UHN6	1383 aa		11.03	□□□□□ -0.64
VPS52-221	ENST00000495755	SYNM	O15061	1565 aa		11.03	□□□□□ -0.64
VPS52-221	ENST00000495755	PIK3C2B	O00750	1634 aa		11.03	□□□□□ -0.64
VPS52-221	ENST00000495755	SCAF11	Q99590	1463 aa	Known RBP	11.03	□□□□□ -0.64
VPS52-221	ENST00000495755	CPS1	P31327	1500 aa		11.03	□□□□□ -0.64
VPS52-221	ENST00000495755	UNC13B	O14795	1591 aa		11.03	□□□□□ -0.64
VPS52-221	ENST00000495755	RRBP1	Q9P2E9	1410 aa	Known RBP	11.02	□□□□□ -0.64
VPS52-221	ENST00000495755	IQGAP1	P46940	1657 aa		11.02	□□□□□ -0.64
VPS52-221	ENST00000495755	UBAP1L	F5GYI3	381 aa		11.02	□□□□□ -0.65
VPS52-221	ENST00000495755	STAG3	Q9UJ98	1225 aa		11.02	□□□□□ -0.65
VPS52-221	ENST00000495755	EID1	Q9Y6B2	187 aa		11.02	□□□□□ -0.65
VPS52-221	ENST00000495755	KDM5A	P29375	1690 aa	Known RBP	11.01	□□□□□ -0.65
VPS52-221	ENST00000495755	TET3	O43151	1660 aa		11.01	□□□□□ -0.65
VPS52-221	ENST00000495755	NUP155	O75694	1391 aa		10.99	□□□□□ -0.65
VPS52-221	ENST00000495755	ADGRB3	O60242	1522 aa		10.99	□□□□□ -0.65
VPS52-221	ENST00000495755	IQGAP3	Q86VI3	1631 aa		10.98	□□□□□ -0.65
VPS52-221	ENST00000495755	GCC2	Q8IWJ2	1684 aa		10.98	□□□□□ -0.65
VPS52-221	ENST00000495755	LRRC7	Q96NW7	1537 aa		10.97	□□□□□ -0.65
VPS52-221	ENST00000495755	STRCP1	A6NGW2	1772 aa		10.97	□□□□□ -0.65
VPS52-221	ENST00000495755		E9PCH4	1651 aa		10.96	□□□□□ -0.65
VPS52-221	ENST00000495755	TOM1	O60784	492 aa		10.96	□□□□□ -0.65
VPS52-221	ENST00000495755	ZFYVE9	O95405	1425 aa		10.95	□□□□□ -0.66
VPS52-221	ENST00000495755	NAIP	Q13075	1403 aa		10.95	□□□□□ -0.66
VPS52-221	ENST00000495755	TMEM131L	A2VDJ0	1609 aa		10.95	□□□□□ -0.66
VPS52-221	ENST00000495755	SLC26A8	Q96RN1	970 aa		10.94	□□□□□ -0.66
VPS52-221	ENST00000495755	RIMS2	Q9UQ26	1411 aa		10.93	□□□□□ -0.66
VPS52-221	ENST00000495755	KCNA6	P17658	529 aa		10.93	□□□□□ -0.66
VPS52-221	ENST00000495755	HDGF	P51858	240 aa	Known RBP	10.93	□□□□□ -0.66
VPS52-221	ENST00000495755	PIP4K2B	P78356	416 aa		10.93	□□□□□ -0.66
VPS52-221	ENST00000495755	ALK	Q9UM73	1620 aa		10.93	□□□□□ -0.66

Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms