RNA–Protein interactions for RNA: ENST00000494956.1

NELFE-213, Transcript of negative elongation factor complex member E, humanhuman

TSL 3

Gene NELFE, Length 568 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NELFE-213ENST00000494956 PPARGC1BQ86YN6 1023 aaKnown RBP16.56■□□□□ 0.24
NELFE-213ENST00000494956 DNMT1P26358 1616 aaKnown RBP16.56■□□□□ 0.24
NELFE-213ENST00000494956 KDM5DQ9BY66 1539 aa16.55■□□□□ 0.24
NELFE-213ENST00000494956 TCOF1Q13428 1488 aaKnown RBP16.55■□□□□ 0.24
NELFE-213ENST00000494956 DAPK1P53355 1430 aa16.55■□□□□ 0.24
NELFE-213ENST00000494956 PPP6R1Q9UPN7 881 aa16.55■□□□□ 0.24
NELFE-213ENST00000494956 WASHC2CQ9Y4E1 1318 aa16.54■□□□□ 0.24
NELFE-213ENST00000494956 RRP7BPQ9NSQ0 103 aa16.54■□□□□ 0.24
NELFE-213ENST00000494956 CHIC2Q9UKJ5 165 aa16.54■□□□□ 0.24
NELFE-213ENST00000494956 CAMSAP1Q5T5Y3 1602 aa16.54■□□□□ 0.24
NELFE-213ENST00000494956 MROH1Q8NDA8 1641 aa16.53■□□□□ 0.24
NELFE-213ENST00000494956 RNF17Q9BXT8 1623 aaKnown RBP16.53■□□□□ 0.24
NELFE-213ENST00000494956 CEP152O94986 1710 aa16.53■□□□□ 0.24
NELFE-213ENST00000494956 ZNF142P52746 1687 aaPredicted RBP16.53■□□□□ 0.24
NELFE-213ENST00000494956 FOXD1Q16676 465 aa16.52■□□□□ 0.24
NELFE-213ENST00000494956 EIF2AK4Q9P2K8 1649 aaKnown RBP16.52■□□□□ 0.23
NELFE-213ENST00000494956 KIF15Q9NS87 1388 aa16.51■□□□□ 0.23
NELFE-213ENST00000494956 CEP170BQ9Y4F5 1589 aaPredicted RBP16.51■□□□□ 0.23
NELFE-213ENST00000494956 DUOX2Q9NRD8 1548 aa16.51■□□□□ 0.23
NELFE-213ENST00000494956 SHANK2Q9UPX8 1470 aa16.51■□□□□ 0.23
NELFE-213ENST00000494956 NCOA1Q15788 1441 aa16.51■□□□□ 0.23
NELFE-213ENST00000494956 CFAP65Q6ZU64 1925 aaKnown RBP16.51■□□□□ 0.23
NELFE-213ENST00000494956 FAM50AQ14320 339 aaKnown RBP16.5■□□□□ 0.23
NELFE-213ENST00000494956 NCKAP5LQ9HCH0 1330 aa16.49■□□□□ 0.23
NELFE-213ENST00000494956 PZPP20742 1482 aa16.49■□□□□ 0.23
NELFE-213ENST00000494956 ABCC3O15438 1527 aa16.49■□□□□ 0.23
NELFE-213ENST00000494956 FAM135AQ9P2D6 1515 aa16.47■□□□□ 0.23
NELFE-213ENST00000494956 TNRQ92752 1358 aa16.47■□□□□ 0.23
NELFE-213ENST00000494956 FBXO41Q8TF61 875 aa16.46■□□□□ 0.23
NELFE-213ENST00000494956 A2ML1A8K2U0 1454 aa16.46■□□□□ 0.23
NELFE-213ENST00000494956 ZC3H13Q5T200 1668 aaKnown RBP16.46■□□□□ 0.23
NELFE-213ENST00000494956 CERKQ8TCT0 537 aa16.45■□□□□ 0.22
NELFE-213ENST00000494956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.45■□□□□ 0.222e-6■■□□□ 12.4
NELFE-213ENST00000494956 PTPRTO14522 1441 aa16.45■□□□□ 0.22
NELFE-213ENST00000494956 DMRT2Q9Y5R5 561 aa16.44■□□□□ 0.22
NELFE-213ENST00000494956 ERBINQ96RT1 1412 aa16.44■□□□□ 0.22
NELFE-213ENST00000494956 ANKRD30AQ9BXX3 1397 aa16.43■□□□□ 0.22
NELFE-213ENST00000494956 PRDM15P57071 1507 aaPredicted RBP16.43■□□□□ 0.22
NELFE-213ENST00000494956 DEPDC5O75140 1603 aa16.41■□□□□ 0.22
NELFE-213ENST00000494956 PLA2R1Q13018 1463 aa16.41■□□□□ 0.22
NELFE-213ENST00000494956 SPATA31D1Q6ZQQ2 1576 aa16.4■□□□□ 0.22
NELFE-213ENST00000494956 ADGRL2O95490 1459 aa16.4■□□□□ 0.22
NELFE-213ENST00000494956 ERVK-7P63135 1459 aa16.4■□□□□ 0.22
NELFE-213ENST00000494956 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.38■□□□□ 0.212e-7■■■■□ 20.6
NELFE-213ENST00000494956 LTBP4Q8N2S1 1624 aa16.38■□□□□ 0.21
NELFE-213ENST00000494956 POLR1AO95602 1720 aaPredicted RBP16.38■□□□□ 0.21
NELFE-213ENST00000494956 UGGT1Q9NYU2 1555 aa16.38■□□□□ 0.21
NELFE-213ENST00000494956 ITGAEP38570 1179 aa16.37■□□□□ 0.21
NELFE-213ENST00000494956 ZNF335Q9H4Z2 1342 aaPredicted RBP16.37■□□□□ 0.21
NELFE-213ENST00000494956 NLRP1Q9C000 1473 aa16.36■□□□□ 0.21
NELFE-213ENST00000494956 NEURL4Q96JN8 1562 aa16.36■□□□□ 0.21
NELFE-213ENST00000494956 PKD2Q13563 968 aa16.36■□□□□ 0.21
NELFE-213ENST00000494956 VWDEQ8N2E2 1590 aa16.35■□□□□ 0.21
NELFE-213ENST00000494956 ANKRD50Q9ULJ7 1429 aa16.34■□□□□ 0.21
NELFE-213ENST00000494956 KANK1Q14678 1352 aa16.33■□□□□ 0.2
NELFE-213ENST00000494956 UBR1Q8IWV7 1749 aa16.33■□□□□ 0.2
NELFE-213ENST00000494956 ARHGAP31Q2M1Z3 1444 aa16.32■□□□□ 0.2
NELFE-213ENST00000494956 THEMISQ8N1K5 641 aaPredicted RBP16.31■□□□□ 0.2
NELFE-213ENST00000494956 LMTK2Q8IWU2 1503 aa16.3■□□□□ 0.2
NELFE-213ENST00000494956 ANKLE2Q86XL3 938 aa16.3■□□□□ 0.2
NELFE-213ENST00000494956 PIK3C2BO00750 1634 aa16.3■□□□□ 0.2
NELFE-213ENST00000494956 SYNMO15061 1565 aa16.29■□□□□ 0.2
NELFE-213ENST00000494956 EFCAB6Q5THR3 1501 aa16.28■□□□□ 0.2
NELFE-213ENST00000494956 NPHP4O75161 1426 aaPredicted RBP16.27■□□□□ 0.19
NELFE-213ENST00000494956 UNC13BO14795 1591 aa16.26■□□□□ 0.19
NELFE-213ENST00000494956 IQGAP1P46940 1657 aa16.26■□□□□ 0.19
NELFE-213ENST00000494956 ROCK1Q13464 1354 aa16.26■□□□□ 0.19
NELFE-213ENST00000494956 IDI1Q13907 227 aa16.25■□□□□ 0.19
NELFE-213ENST00000494956 MED14O60244 1454 aa16.24■□□□□ 0.19
NELFE-213ENST00000494956 LTKP29376 864 aa16.24■□□□□ 0.19
NELFE-213ENST00000494956 TET3O43151 1660 aa16.24■□□□□ 0.19
NELFE-213ENST00000494956 NOS1P29475 1434 aa16.23■□□□□ 0.19
NELFE-213ENST00000494956 RRBP1Q9P2E9 1410 aaKnown RBP16.23■□□□□ 0.19
NELFE-213ENST00000494956 STRCP1A6NGW2 1772 aa16.23■□□□□ 0.19
NELFE-213ENST00000494956 E9PCH4 1651 aa16.22■□□□□ 0.19
NELFE-213ENST00000494956 GCC2Q8IWJ2 1684 aa16.22■□□□□ 0.19
NELFE-213ENST00000494956 ARHGAP23Q9P227 1491 aa16.22■□□□□ 0.19
NELFE-213ENST00000494956 MYO5BQ9ULV0 1848 aa16.22■□□□□ 0.19
NELFE-213ENST00000494956 SLIT1O75093 1534 aa16.21■□□□□ 0.19
NELFE-213ENST00000494956 TXNDC2Q86VQ3 553 aa16.21■□□□□ 0.19
NELFE-213ENST00000494956 STAG3Q9UJ98 1225 aa16.21■□□□□ 0.19
NELFE-213ENST00000494956 SCAF11Q99590 1463 aaKnown RBP16.21■□□□□ 0.19
NELFE-213ENST00000494956 IQGAP3Q86VI3 1631 aa16.19■□□□□ 0.18
NELFE-213ENST00000494956 IQSEC2Q5JU85 1478 aa16.19■□□□□ 0.18
NELFE-213ENST00000494956 TMEM2Q9UHN6 1383 aa16.18■□□□□ 0.18
NELFE-213ENST00000494956 NUP155O75694 1391 aa16.17■□□□□ 0.18
NELFE-213ENST00000494956 UBAP1LF5GYI3 381 aa16.17■□□□□ 0.18
NELFE-213ENST00000494956 ADGRB3O60242 1522 aa16.17■□□□□ 0.18
NELFE-213ENST00000494956 RPRD2Q5VT52 1461 aaKnown RBP16.16■□□□□ 0.18
NELFE-213ENST00000494956 KDM5AP29375 1690 aaKnown RBP16.16■□□□□ 0.18
NELFE-213ENST00000494956 CPS1P31327 1500 aa16.15■□□□□ 0.18
NELFE-213ENST00000494956 EID1Q9Y6B2 187 aa16.14■□□□□ 0.17
NELFE-213ENST00000494956 NAIPQ13075 1403 aa16.13■□□□□ 0.17
NELFE-213ENST00000494956 TMEM131LA2VDJ0 1609 aa16.13■□□□□ 0.17
NELFE-213ENST00000494956 CHGAP10645 457 aaKnown RBP16.13■□□□□ 0.17
NELFE-213ENST00000494956 SLC52A1Q9NWF4 448 aa16.13■□□□□ 0.17
NELFE-213ENST00000494956 LRRC7Q96NW7 1537 aa16.1■□□□□ 0.17
NELFE-213ENST00000494956 NUTM2DQ5VT03 806 aaPredicted RBP16.1■□□□□ 0.17
NELFE-213ENST00000494956 SLC26A8Q96RN1 970 aa16.1■□□□□ 0.17
NELFE-213ENST00000494956 ALKQ9UM73 1620 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms