RNA–Protein interactions for RNA: ENST00000494069.1

LRCH3-219, Transcript of leucine rich repeats and calponin homology domain containing 3, humanhuman

TSL 5

Gene LRCH3, Length 783 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3-219ENST00000494069 NCBP3Q53F19 620 aaKnown RBP13.4□□□□□ -0.26
LRCH3-219ENST00000494069 RNF216Q9NWF9 866 aaPredicted RBP13.4□□□□□ -0.26
LRCH3-219ENST00000494069 MIA2Q96PC5 1412 aa13.39□□□□□ -0.27
LRCH3-219ENST00000494069 MROH2AA6NES4 1674 aa13.39□□□□□ -0.27
LRCH3-219ENST00000494069 STRCQ7RTU9 1775 aa13.39□□□□□ -0.27
LRCH3-219ENST00000494069 PTPRKQ15262 1439 aa13.39□□□□□ -0.27
LRCH3-219ENST00000494069 NPATQ14207 1427 aa13.38□□□□□ -0.27
LRCH3-219ENST00000494069 FBXO31Q5XUX0 539 aaPredicted RBP13.37□□□□□ -0.27
LRCH3-219ENST00000494069 FBXO41Q8TF61 875 aa13.36□□□□□ -0.27
LRCH3-219ENST00000494069 ABCC5O15440 1437 aa13.35□□□□□ -0.27
LRCH3-219ENST00000494069 MAST1Q9Y2H9 1570 aa13.35□□□□□ -0.27
LRCH3-219ENST00000494069 WASHC2CQ9Y4E1 1318 aa13.35□□□□□ -0.27
LRCH3-219ENST00000494069 NCKAP5LQ9HCH0 1330 aa13.34□□□□□ -0.27
LRCH3-219ENST00000494069 NCOA1Q15788 1441 aa13.33□□□□□ -0.28
LRCH3-219ENST00000494069 FGD6Q6ZV73 1430 aa13.33□□□□□ -0.28
LRCH3-219ENST00000494069 PTPN23Q9H3S7 1636 aa13.33□□□□□ -0.28
LRCH3-219ENST00000494069 CERKQ8TCT0 537 aa13.33□□□□□ -0.28
LRCH3-219ENST00000494069 RRP7BPQ9NSQ0 103 aa13.33□□□□□ -0.28
LRCH3-219ENST00000494069 CAMSAP1Q5T5Y3 1602 aa13.31□□□□□ -0.28
LRCH3-219ENST00000494069 KDM5DQ9BY66 1539 aa13.31□□□□□ -0.28
LRCH3-219ENST00000494069 NPM3O75607 178 aaKnown RBP13.31□□□□□ -0.28
LRCH3-219ENST00000494069 CHIC2Q9UKJ5 165 aa13.31□□□□□ -0.28
LRCH3-219ENST00000494069 MYO3AQ8NEV4 1616 aa13.31□□□□□ -0.28
LRCH3-219ENST00000494069 TCOF1Q13428 1488 aaKnown RBP13.3□□□□□ -0.28
LRCH3-219ENST00000494069 DCAF8L1A6NGE4 600 aa13.3□□□□□ -0.28
LRCH3-219ENST00000494069 PTPRTO14522 1441 aa13.3□□□□□ -0.28
LRCH3-219ENST00000494069 DAPK1P53355 1430 aa13.3□□□□□ -0.28
LRCH3-219ENST00000494069 KCNA4P22459 653 aa13.29□□□□□ -0.28
LRCH3-219ENST00000494069 TNRQ92752 1358 aa13.29□□□□□ -0.28
LRCH3-219ENST00000494069 KIF15Q9NS87 1388 aa13.29□□□□□ -0.28
LRCH3-219ENST00000494069 PZPP20742 1482 aa13.29□□□□□ -0.28
LRCH3-219ENST00000494069 CEP170BQ9Y4F5 1589 aaPredicted RBP13.28□□□□□ -0.28
LRCH3-219ENST00000494069 PPARGC1BQ86YN6 1023 aaKnown RBP13.28□□□□□ -0.28
LRCH3-219ENST00000494069 MROH1Q8NDA8 1641 aa13.28□□□□□ -0.28
LRCH3-219ENST00000494069 RNF17Q9BXT8 1623 aaKnown RBP13.28□□□□□ -0.28
LRCH3-219ENST00000494069 SHANK2Q9UPX8 1470 aa13.27□□□□□ -0.29
LRCH3-219ENST00000494069 ABCC3O15438 1527 aa13.27□□□□□ -0.29
LRCH3-219ENST00000494069 DUOX2Q9NRD8 1548 aa13.27□□□□□ -0.29
LRCH3-219ENST00000494069 CROCC2H7BZ55 1655 aa13.27□□□□□ -0.29
LRCH3-219ENST00000494069 A2ML1A8K2U0 1454 aa13.26□□□□□ -0.29
LRCH3-219ENST00000494069 DNMT1P26358 1616 aaKnown RBP13.26□□□□□ -0.29
LRCH3-219ENST00000494069 ZNF142P52746 1687 aaPredicted RBP13.26□□□□□ -0.29
LRCH3-219ENST00000494069 FAM50AQ14320 339 aaKnown RBP13.26□□□□□ -0.29
LRCH3-219ENST00000494069 FAM135AQ9P2D6 1515 aa13.25□□□□□ -0.29
LRCH3-219ENST00000494069 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.25□□□□□ -0.291e-7■■■□□ 14.6
LRCH3-219ENST00000494069 EIF2AK4Q9P2K8 1649 aaKnown RBP13.24□□□□□ -0.29
LRCH3-219ENST00000494069 PLA2R1Q13018 1463 aa13.24□□□□□ -0.29
LRCH3-219ENST00000494069 ZNF335Q9H4Z2 1342 aaPredicted RBP13.23□□□□□ -0.29
LRCH3-219ENST00000494069 PKD2Q13563 968 aa13.23□□□□□ -0.29
LRCH3-219ENST00000494069 ERBINQ96RT1 1412 aa13.22□□□□□ -0.29
LRCH3-219ENST00000494069 ANKRD30AQ9BXX3 1397 aa13.22□□□□□ -0.29
LRCH3-219ENST00000494069 LTBP4Q8N2S1 1624 aa13.22□□□□□ -0.29
LRCH3-219ENST00000494069 CEP152O94986 1710 aa13.22□□□□□ -0.29
LRCH3-219ENST00000494069 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.21□□□□□ -0.29
LRCH3-219ENST00000494069 ERVK-7P63135 1459 aa13.21□□□□□ -0.3
LRCH3-219ENST00000494069 SPATA31D1Q6ZQQ2 1576 aa13.2□□□□□ -0.3
LRCH3-219ENST00000494069 CFAP65Q6ZU64 1925 aaKnown RBP13.19□□□□□ -0.3
LRCH3-219ENST00000494069 ZC3H13Q5T200 1668 aaKnown RBP13.19□□□□□ -0.3
LRCH3-219ENST00000494069 NLRP1Q9C000 1473 aa13.19□□□□□ -0.3
LRCH3-219ENST00000494069 THEMISQ8N1K5 641 aaPredicted RBP13.19□□□□□ -0.3
LRCH3-219ENST00000494069 PRDM15P57071 1507 aaPredicted RBP13.18□□□□□ -0.3
LRCH3-219ENST00000494069 UGGT1Q9NYU2 1555 aa13.18□□□□□ -0.3
LRCH3-219ENST00000494069 ADGRL2O95490 1459 aa13.17□□□□□ -0.3
LRCH3-219ENST00000494069 NEURL4Q96JN8 1562 aa13.17□□□□□ -0.3
LRCH3-219ENST00000494069 ANKLE2Q86XL3 938 aa13.17□□□□□ -0.3
LRCH3-219ENST00000494069 DEPDC5O75140 1603 aa13.17□□□□□ -0.3
LRCH3-219ENST00000494069 ARHGAP31Q2M1Z3 1444 aa13.15□□□□□ -0.3
LRCH3-219ENST00000494069 ITGAEP38570 1179 aa13.15□□□□□ -0.3
LRCH3-219ENST00000494069 KANK1Q14678 1352 aa13.15□□□□□ -0.3
LRCH3-219ENST00000494069 ANKRD50Q9ULJ7 1429 aa13.14□□□□□ -0.31
LRCH3-219ENST00000494069 VWDEQ8N2E2 1590 aa13.14□□□□□ -0.31
LRCH3-219ENST00000494069 POLR1AO95602 1720 aaPredicted RBP13.13□□□□□ -0.31
LRCH3-219ENST00000494069 NPHP4O75161 1426 aaPredicted RBP13.13□□□□□ -0.31
LRCH3-219ENST00000494069 LMTK2Q8IWU2 1503 aa13.12□□□□□ -0.31
LRCH3-219ENST00000494069 LTKP29376 864 aa13.11□□□□□ -0.31
LRCH3-219ENST00000494069 IDI1Q13907 227 aa13.11□□□□□ -0.31
LRCH3-219ENST00000494069 MED14O60244 1454 aa13.1□□□□□ -0.31
LRCH3-219ENST00000494069 UBR1Q8IWV7 1749 aa13.1□□□□□ -0.31
LRCH3-219ENST00000494069 TXNDC2Q86VQ3 553 aa13.09□□□□□ -0.31
LRCH3-219ENST00000494069 IQSEC2Q5JU85 1478 aa13.09□□□□□ -0.31
LRCH3-219ENST00000494069 ROCK1Q13464 1354 aa13.08□□□□□ -0.31
LRCH3-219ENST00000494069 NOS1P29475 1434 aa13.08□□□□□ -0.32
LRCH3-219ENST00000494069 UBAP1LF5GYI3 381 aa13.08□□□□□ -0.32
LRCH3-219ENST00000494069 PIK3C2BO00750 1634 aa13.08□□□□□ -0.32
LRCH3-219ENST00000494069 EFCAB6Q5THR3 1501 aa13.08□□□□□ -0.32
LRCH3-219ENST00000494069 SYNMO15061 1565 aa13.07□□□□□ -0.32
LRCH3-219ENST00000494069 STAG3Q9UJ98 1225 aa13.07□□□□□ -0.32
LRCH3-219ENST00000494069 ARHGAP23Q9P227 1491 aa13.07□□□□□ -0.32
LRCH3-219ENST00000494069 IQGAP1P46940 1657 aa13.06□□□□□ -0.32
LRCH3-219ENST00000494069 SCAF11Q99590 1463 aaKnown RBP13.06□□□□□ -0.32
LRCH3-219ENST00000494069 SLIT1O75093 1534 aa13.06□□□□□ -0.32
LRCH3-219ENST00000494069 TMEM2Q9UHN6 1383 aa13.06□□□□□ -0.32
LRCH3-219ENST00000494069 EID1Q9Y6B2 187 aa13.04□□□□□ -0.32
LRCH3-219ENST00000494069 CPS1P31327 1500 aa13.03□□□□□ -0.32
LRCH3-219ENST00000494069 UNC13BO14795 1591 aa13.03□□□□□ -0.32
LRCH3-219ENST00000494069 STRCP1A6NGW2 1772 aa13.03□□□□□ -0.32
LRCH3-219ENST00000494069 PIP4K2BP78356 416 aa13.02□□□□□ -0.33
LRCH3-219ENST00000494069 SLC52A1Q9NWF4 448 aa13.02□□□□□ -0.33
LRCH3-219ENST00000494069 NUP155O75694 1391 aa13.02□□□□□ -0.33
LRCH3-219ENST00000494069 RRBP1Q9P2E9 1410 aaKnown RBP13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms