RNA–Protein interactions for RNA: ENST00000494043.1

MCF2L-231, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 896 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-231ENST00000494043 BCORL1Q5H9F3 1711 aa16.87■□□□□ 0.29
MCF2L-231ENST00000494043 DEPDC5O75140 1603 aa16.86■□□□□ 0.29
MCF2L-231ENST00000494043 CCER1Q8TC90 406 aaPredicted RBP16.85■□□□□ 0.29
MCF2L-231ENST00000494043 RNF17Q9BXT8 1623 aaKnown RBP16.85■□□□□ 0.29
MCF2L-231ENST00000494043 PZPP20742 1482 aa16.84■□□□□ 0.29
MCF2L-231ENST00000494043 KIF3BO15066 747 aa16.83■□□□□ 0.28
MCF2L-231ENST00000494043 NUP155O75694 1391 aa16.83■□□□□ 0.28
MCF2L-231ENST00000494043 PRDM15P57071 1507 aaPredicted RBP16.83■□□□□ 0.28
MCF2L-231ENST00000494043 MROH1Q8NDA8 1641 aa16.82■□□□□ 0.28
MCF2L-231ENST00000494043 AGLP35573 1532 aa16.82■□□□□ 0.28
MCF2L-231ENST00000494043 IQGAP3Q86VI3 1631 aa16.81■□□□□ 0.28
MCF2L-231ENST00000494043 FAM135AQ9P2D6 1515 aa16.8■□□□□ 0.28
MCF2L-231ENST00000494043 MPHOSPH9Q99550 1183 aa16.8■□□□□ 0.28
MCF2L-231ENST00000494043 VWDEQ8N2E2 1590 aa16.8■□□□□ 0.28
MCF2L-231ENST00000494043 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.79■□□□□ 0.283e-6■■□□□ 13.8
MCF2L-231ENST00000494043 SIGLEC1Q9BZZ2 1709 aa16.79■□□□□ 0.28
MCF2L-231ENST00000494043 SLC4A1APQ9BWU0 796 aaKnown RBP16.78■□□□□ 0.28
MCF2L-231ENST00000494043 KANK1Q14678 1352 aa16.77■□□□□ 0.28
MCF2L-231ENST00000494043 CLSPNQ9HAW4 1339 aa16.77■□□□□ 0.28
MCF2L-231ENST00000494043 LMTK2Q8IWU2 1503 aa16.75■□□□□ 0.27
MCF2L-231ENST00000494043 TET3O43151 1660 aa16.73■□□□□ 0.27
MCF2L-231ENST00000494043 GGT6Q6P531 493 aa16.73■□□□□ 0.27
MCF2L-231ENST00000494043 ABCC3O15438 1527 aa16.72■□□□□ 0.27
MCF2L-231ENST00000494043 PKD2Q13563 968 aa16.72■□□□□ 0.27
MCF2L-231ENST00000494043 ZC3H13Q5T200 1668 aaKnown RBP16.71■□□□□ 0.27
MCF2L-231ENST00000494043 CEP152O94986 1710 aa16.7■□□□□ 0.26
MCF2L-231ENST00000494043 EFCAB6Q5THR3 1501 aa16.7■□□□□ 0.26
MCF2L-231ENST00000494043 FOXD1Q16676 465 aa16.69■□□□□ 0.26
MCF2L-231ENST00000494043 SENP3Q9H4L4 574 aaPredicted RBP16.69■□□□□ 0.26
MCF2L-231ENST00000494043 ANKRD30BQ9BXX2 1392 aa16.68■□□□□ 0.26
MCF2L-231ENST00000494043 PPP6R1Q9UPN7 881 aa16.68■□□□□ 0.26
MCF2L-231ENST00000494043 E9PCH4 1651 aa16.68■□□□□ 0.26
MCF2L-231ENST00000494043 ARID4BQ4LE39 1312 aaPredicted RBP16.68■□□□□ 0.26
MCF2L-231ENST00000494043 WASHC2CQ9Y4E1 1318 aa16.67■□□□□ 0.26
MCF2L-231ENST00000494043 CAMSAP1Q5T5Y3 1602 aa16.67■□□□□ 0.26
MCF2L-231ENST00000494043 MLECQ14165 292 aa16.65■□□□□ 0.26
MCF2L-231ENST00000494043 RPRD2Q5VT52 1461 aaKnown RBP16.64■□□□□ 0.25
MCF2L-231ENST00000494043 NPATQ14207 1427 aa16.63■□□□□ 0.25
MCF2L-231ENST00000494043 ARHGAP31Q2M1Z3 1444 aa16.63■□□□□ 0.25
MCF2L-231ENST00000494043 PLA2R1Q13018 1463 aa16.62■□□□□ 0.25
MCF2L-231ENST00000494043 ZEB1P37275 1124 aaPredicted RBP16.62■□□□□ 0.25
MCF2L-231ENST00000494043 SIN3AQ96ST3 1273 aa16.62■□□□□ 0.25
MCF2L-231ENST00000494043 CLTCQ00610 1675 aaKnown RBP16.62■□□□□ 0.25
MCF2L-231ENST00000494043 PTPRTO14522 1441 aa16.62■□□□□ 0.25
MCF2L-231ENST00000494043 TRPM2O94759 1503 aa16.6■□□□□ 0.25
MCF2L-231ENST00000494043 SPHKAPQ2M3C7 1700 aa16.6■□□□□ 0.25
MCF2L-231ENST00000494043 CNTLNQ9NXG0 1405 aa16.6■□□□□ 0.25
MCF2L-231ENST00000494043 NEUROD1Q13562 356 aa16.58■□□□□ 0.24
MCF2L-231ENST00000494043 CCDC144AA2RUR9 1427 aa16.57■□□□□ 0.24
MCF2L-231ENST00000494043 ESF1Q9H501 851 aaKnown RBP16.57■□□□□ 0.24
MCF2L-231ENST00000494043 MROH2AA6NES4 1674 aa16.56■□□□□ 0.24
MCF2L-231ENST00000494043 NOS1P29475 1434 aa16.56■□□□□ 0.24
MCF2L-231ENST00000494043 FER1L4A9Z1Z3 1794 aa16.56■□□□□ 0.24
MCF2L-231ENST00000494043 PHF23Q9BUL5 403 aaPredicted RBP16.55■□□□□ 0.24
MCF2L-231ENST00000494043 ERVK-7P63135 1459 aa16.54■□□□□ 0.24
MCF2L-231ENST00000494043 ZMYM3Q14202 1370 aa16.53■□□□□ 0.24
MCF2L-231ENST00000494043 ADAMTSL3P82987 1691 aa16.53■□□□□ 0.24
MCF2L-231ENST00000494043 PREX1Q8TCU6 1659 aa16.53■□□□□ 0.24
MCF2L-231ENST00000494043 TIMELESSQ9UNS1 1208 aa16.53■□□□□ 0.24
MCF2L-231ENST00000494043 CLTCL1P53675 1640 aa16.52■□□□□ 0.24
MCF2L-231ENST00000494043 MADDQ8WXG6 1647 aa16.52■□□□□ 0.24
MCF2L-231ENST00000494043 TONSLQ96HA7 1378 aa16.52■□□□□ 0.24
MCF2L-231ENST00000494043 SYNMO15061 1565 aa16.52■□□□□ 0.24
MCF2L-231ENST00000494043 SPATA31D1Q6ZQQ2 1576 aa16.51■□□□□ 0.23
MCF2L-231ENST00000494043 UGGT1Q9NYU2 1555 aa16.51■□□□□ 0.23
MCF2L-231ENST00000494043 PIK3C2BO00750 1634 aa16.49■□□□□ 0.23
MCF2L-231ENST00000494043 FBXO31Q5XUX0 539 aaPredicted RBP16.48■□□□□ 0.23
MCF2L-231ENST00000494043 RIMS1Q86UR5 1692 aaKnown RBP16.48■□□□□ 0.23
MCF2L-231ENST00000494043 CFAP65Q6ZU64 1925 aaKnown RBP16.48■□□□□ 0.23
MCF2L-231ENST00000494043 C3P01024 1663 aa16.47■□□□□ 0.23
MCF2L-231ENST00000494043 SPATA31E1Q6ZUB1 1445 aa16.47■□□□□ 0.23
MCF2L-231ENST00000494043 NEURL4Q96JN8 1562 aa16.47■□□□□ 0.23
MCF2L-231ENST00000494043 SLC52A1Q9NWF4 448 aa16.45■□□□□ 0.22
MCF2L-231ENST00000494043 ADGRB3O60242 1522 aa16.45■□□□□ 0.22
MCF2L-231ENST00000494043 TNRQ92752 1358 aa16.44■□□□□ 0.22
MCF2L-231ENST00000494043 L3MBTL2Q969R5 705 aa16.44■□□□□ 0.22
MCF2L-231ENST00000494043 KIF1BO60333 1816 aa16.43■□□□□ 0.22
MCF2L-231ENST00000494043 CEBPAP49715 358 aaPredicted RBP16.42■□□□□ 0.22
MCF2L-231ENST00000494043 IDI1Q13907 227 aa16.41■□□□□ 0.22
MCF2L-231ENST00000494043 PPP1R15AO75807 674 aaPredicted RBP16.4■□□□□ 0.22
MCF2L-231ENST00000494043 RGL3Q3MIN7 710 aa16.39■□□□□ 0.21
MCF2L-231ENST00000494043 TMEM131LA2VDJ0 1609 aa16.38■□□□□ 0.21
MCF2L-231ENST00000494043 PTPRMP28827 1452 aa16.38■□□□□ 0.21
MCF2L-231ENST00000494043 NLRP1Q9C000 1473 aa16.38■□□□□ 0.21
MCF2L-231ENST00000494043 CHGAP10645 457 aaKnown RBP16.37■□□□□ 0.21
MCF2L-231ENST00000494043 PLPPR3Q6T4P5 718 aa16.36■□□□□ 0.21
MCF2L-231ENST00000494043 DCAF11Q8TEB1 546 aa16.36■□□□□ 0.21
MCF2L-231ENST00000494043 UHRF1BP1Q6BDS2 1440 aa16.36■□□□□ 0.21
MCF2L-231ENST00000494043 MYO3AQ8NEV4 1616 aa16.35■□□□□ 0.21
MCF2L-231ENST00000494043 IFT172Q9UG01 1749 aa16.35■□□□□ 0.21
MCF2L-231ENST00000494043 A2ML1A8K2U0 1454 aa16.35■□□□□ 0.21
MCF2L-231ENST00000494043 KDM5AP29375 1690 aaKnown RBP16.34■□□□□ 0.21
MCF2L-231ENST00000494043 MYOM2P54296 1465 aa16.34■□□□□ 0.21
MCF2L-231ENST00000494043 ZNF326Q5BKZ1 582 aaKnown RBP16.33■□□□□ 0.2
MCF2L-231ENST00000494043 RPGRIP1LQ68CZ1 1315 aa16.33■□□□□ 0.2
MCF2L-231ENST00000494043 NEXMIFQ5QGS0 1516 aa16.32■□□□□ 0.2
MCF2L-231ENST00000494043 PRAG1Q86YV5 1406 aa16.32■□□□□ 0.2
MCF2L-231ENST00000494043 STAC3Q96MF2 364 aa16.32■□□□□ 0.2
MCF2L-231ENST00000494043 STAG3Q9UJ98 1225 aa16.32■□□□□ 0.2
MCF2L-231ENST00000494043 MYO5BQ9ULV0 1848 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 87 ms