RNA–Protein interactions for RNA: ENST00000493949.1

PDLIM1-205, Transcript of PDZ and LIM domain 1, humanhuman

TSL 3

Gene PDLIM1, Length 795 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-205ENST00000493949 ATP7AQ04656 1500 aa16.66■□□□□ 0.26
PDLIM1-205ENST00000493949 RNF216Q9NWF9 866 aaPredicted RBP16.66■□□□□ 0.26
PDLIM1-205ENST00000493949 ARHGAP35Q9NRY4 1499 aa16.66■□□□□ 0.26
PDLIM1-205ENST00000493949 A2MP01023 1474 aa16.65■□□□□ 0.26
PDLIM1-205ENST00000493949 DEPDC5O75140 1603 aa16.64■□□□□ 0.25
PDLIM1-205ENST00000493949 MED14O60244 1454 aa16.64■□□□□ 0.25
PDLIM1-205ENST00000493949 SPAG9O60271 1321 aaKnown RBP16.64■□□□□ 0.25
PDLIM1-205ENST00000493949 RNF17Q9BXT8 1623 aaKnown RBP16.63■□□□□ 0.25
PDLIM1-205ENST00000493949 SYCP2Q9BX26 1530 aa16.63■□□□□ 0.25
PDLIM1-205ENST00000493949 STRCP1A6NGW2 1772 aa16.63■□□□□ 0.25
PDLIM1-205ENST00000493949 ADGBQ8N7X0 1667 aa16.62■□□□□ 0.25
PDLIM1-205ENST00000493949 SYNMO15061 1565 aa16.61■□□□□ 0.25
PDLIM1-205ENST00000493949 GGT6Q6P531 493 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 KIAA1107Q9UPP5 1409 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 LRRC7Q96NW7 1537 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 IQGAP1P46940 1657 aa16.59■□□□□ 0.25
PDLIM1-205ENST00000493949 C1QBPQ07021 282 aaKnown RBP16.58■□□□□ 0.24
PDLIM1-205ENST00000493949 ANKLE2Q86XL3 938 aa16.58■□□□□ 0.24
PDLIM1-205ENST00000493949 CCDC18Q5T9S5 1454 aa16.58■□□□□ 0.24
PDLIM1-205ENST00000493949 NPHP4O75161 1426 aaPredicted RBP16.57■□□□□ 0.24
PDLIM1-205ENST00000493949 TNRQ92752 1358 aa16.57■□□□□ 0.24
PDLIM1-205ENST00000493949 FAM135AQ9P2D6 1515 aa16.56■□□□□ 0.24
PDLIM1-205ENST00000493949 PCGF6Q9BYE7 350 aa16.56■□□□□ 0.24
PDLIM1-205ENST00000493949 GPATCH8Q9UKJ3 1502 aaKnown RBP16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 PZPP20742 1482 aa16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 PLEKHH2Q8IVE3 1493 aa16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 ZEB1P37275 1124 aaPredicted RBP16.55■□□□□ 0.24
PDLIM1-205ENST00000493949 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 HNRNPMP52272 730 aaKnown RBP eCLIP16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 THEMISQ8N1K5 641 aaPredicted RBP16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 NLRP1Q9C000 1473 aa16.54■□□□□ 0.24
PDLIM1-205ENST00000493949 TRIM26Q12899 539 aaPredicted RBP16.53■□□□□ 0.24
PDLIM1-205ENST00000493949 POTEAQ6S8J7 498 aa16.53■□□□□ 0.24
PDLIM1-205ENST00000493949 XIRP1Q702N8 1843 aaKnown RBP16.53■□□□□ 0.24
PDLIM1-205ENST00000493949 UGGT1Q9NYU2 1555 aa16.52■□□□□ 0.24
PDLIM1-205ENST00000493949 CASKIN1Q8WXD9 1431 aa16.52■□□□□ 0.23
PDLIM1-205ENST00000493949 ZC3H13Q5T200 1668 aaKnown RBP16.51■□□□□ 0.23
PDLIM1-205ENST00000493949 FBXO31Q5XUX0 539 aaPredicted RBP16.51■□□□□ 0.23
PDLIM1-205ENST00000493949 ZNF777Q9ULD5 760 aaPredicted RBP16.51■□□□□ 0.23
PDLIM1-205ENST00000493949 SETD1AO15047 1707 aaKnown RBP16.5■□□□□ 0.23
PDLIM1-205ENST00000493949 KDM5DQ9BY66 1539 aa16.5■□□□□ 0.23
PDLIM1-205ENST00000493949 MIA2Q96PC5 1412 aa16.49■□□□□ 0.23
PDLIM1-205ENST00000493949 UBTFP17480 764 aaKnown RBP16.47■□□□□ 0.23
PDLIM1-205ENST00000493949 RTEL1-TNFRSF6BF6WH68 1400 aa16.46■□□□□ 0.23
PDLIM1-205ENST00000493949 FAM135BQ49AJ0 1406 aa16.46■□□□□ 0.23
PDLIM1-205ENST00000493949 DHX29Q7Z478 1369 aaKnown RBP16.46■□□□□ 0.23
PDLIM1-205ENST00000493949 CFDP1Q9UEE9 299 aaPredicted RBP16.43■□□□□ 0.22
PDLIM1-205ENST00000493949 MBD5Q9P267 1494 aa16.42■□□□□ 0.22
PDLIM1-205ENST00000493949 FYCO1Q9BQS8 1478 aa16.42■□□□□ 0.22
PDLIM1-205ENST00000493949 UBR1Q8IWV7 1749 aa16.39■□□□□ 0.21
PDLIM1-205ENST00000493949 ROBO1Q9Y6N7 1651 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 KIF3BO15066 747 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 WASHC2CQ9Y4E1 1318 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 CCNB3Q8WWL7 1395 aa16.38■□□□□ 0.21
PDLIM1-205ENST00000493949 SCAF11Q99590 1463 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 SRCAPQ6ZRS2 3230 aa16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 PELP1Q8IZL8 1130 aaKnown RBP16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 UPF1Q92900 1129 aaKnown RBP eCLIP16.35■□□□□ 0.21
PDLIM1-205ENST00000493949 ARHGAP23Q9P227 1491 aa16.34■□□□□ 0.21
PDLIM1-205ENST00000493949 SLIT1O75093 1534 aa16.33■□□□□ 0.2
PDLIM1-205ENST00000493949 TIAM1Q13009 1591 aa16.33■□□□□ 0.2
PDLIM1-205ENST00000493949 ZNF644Q9H582 1327 aaPredicted RBP16.32■□□□□ 0.2
PDLIM1-205ENST00000493949 ERVK-7P63135 1459 aa16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 NCOA2Q15596 1464 aa16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 LRRC9Q6ZRR7 1453 aa16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 CFAP65Q6ZU64 1925 aaKnown RBP16.31■□□□□ 0.2
PDLIM1-205ENST00000493949 ABCC3O15438 1527 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 MAP3K1Q13233 1512 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 PHLPP1O60346 1717 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 CCDC141Q6ZP82 1450 aa16.29■□□□□ 0.2
PDLIM1-205ENST00000493949 LTKP29376 864 aa16.28■□□□□ 0.2
PDLIM1-205ENST00000493949 TMEM94Q12767 1356 aa16.26■□□□□ 0.19
PDLIM1-205ENST00000493949 JCADQ9P266 1359 aa16.26■□□□□ 0.19
PDLIM1-205ENST00000493949 RSPH4AQ5TD94 716 aa16.25■□□□□ 0.19
PDLIM1-205ENST00000493949 CAMSAP2Q08AD1 1489 aa16.24■□□□□ 0.19
PDLIM1-205ENST00000493949 TXNDC2Q86VQ3 553 aa16.24■□□□□ 0.19
PDLIM1-205ENST00000493949 MTUS2Q5JR59 1369 aa16.24■□□□□ 0.19
PDLIM1-205ENST00000493949 COL16A1Q07092 1604 aaPredicted RBP16.23■□□□□ 0.19
PDLIM1-205ENST00000493949 EIF2AK4Q9P2K8 1649 aaKnown RBP16.23■□□□□ 0.19
PDLIM1-205ENST00000493949 MROH1Q8NDA8 1641 aa16.23■□□□□ 0.19
PDLIM1-205ENST00000493949 CEP152O94986 1710 aa16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 ARHGEF5Q12774 1597 aa16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 KDM5AP29375 1690 aaKnown RBP16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 PRDM15P57071 1507 aaPredicted RBP16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 CDK12Q9NYV4 1490 aaPredicted RBP16.22■□□□□ 0.19
PDLIM1-205ENST00000493949 EHBP1L1Q8N3D4 1523 aa16.21■□□□□ 0.19
PDLIM1-205ENST00000493949 LRP6O75581 1613 aa16.21■□□□□ 0.19
PDLIM1-205ENST00000493949 ZNF772Q68DY9 489 aaPredicted RBP16.21■□□□□ 0.19
PDLIM1-205ENST00000493949 NWD1Q149M9 1564 aa16.21■□□□□ 0.18
PDLIM1-205ENST00000493949 CEP162Q5TB80 1403 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 LOC105371045A0A1W2PR82 267 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 KCNA6P17658 529 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 EID1Q9Y6B2 187 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 NKTRP30414 1462 aaKnown RBP16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 TET3O43151 1660 aa16.2■□□□□ 0.18
PDLIM1-205ENST00000493949 FGD6Q6ZV73 1430 aa16.19■□□□□ 0.18
PDLIM1-205ENST00000493949 SPATA31A6Q5VVP1 1343 aa16.19■□□□□ 0.18
PDLIM1-205ENST00000493949 SHPRHQ149N8 1683 aa16.18■□□□□ 0.18
PDLIM1-205ENST00000493949 PIK3C2BO00750 1634 aa16.18■□□□□ 0.18
PDLIM1-205ENST00000493949 TMEM2Q9UHN6 1383 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms