RNA–Protein interactions for RNA: ENST00000493682.6

COL9A1-210, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 5

Gene COL9A1, Length 1,117 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-210ENST00000493682 VPS8Q8N3P4 1428 aa27.67■■■□□ 2.02
COL9A1-210ENST00000493682 ARHGEF5Q12774 1597 aa27.66■■■□□ 2.02
COL9A1-210ENST00000493682 KDM5DQ9BY66 1539 aa27.66■■■□□ 2.02
COL9A1-210ENST00000493682 LOC105371045A0A1W2PR82 267 aa27.65■■■□□ 2.02
COL9A1-210ENST00000493682 FBXO31Q5XUX0 539 aaPredicted RBP27.65■■■□□ 2.02
COL9A1-210ENST00000493682 LRRC9Q6ZRR7 1453 aa27.64■■■□□ 2.02
COL9A1-210ENST00000493682 DNMT1P26358 1616 aaKnown RBP27.64■■■□□ 2.02
COL9A1-210ENST00000493682 FAM135AQ9P2D6 1515 aa27.64■■■□□ 2.02
COL9A1-210ENST00000493682 TSPY4P0CV99 314 aa27.64■■■□□ 2.02
COL9A1-210ENST00000493682 TSPY10P0CW01 314 aa27.64■■■□□ 2.02
COL9A1-210ENST00000493682 TNRQ92752 1358 aa27.63■■■□□ 2.01
COL9A1-210ENST00000493682 WASHC2CQ9Y4E1 1318 aa27.63■■■□□ 2.01
COL9A1-210ENST00000493682 PZPP20742 1482 aa27.63■■■□□ 2.01
COL9A1-210ENST00000493682 DISP3Q9P2K9 1392 aa27.61■■■□□ 2.01
COL9A1-210ENST00000493682 KANK4Q5T7N3 995 aaPredicted RBP27.56■■■□□ 2
COL9A1-210ENST00000493682 UBAP1LF5GYI3 381 aa27.54■■■□□ 2
COL9A1-210ENST00000493682 MAP3K1Q13233 1512 aa27.53■■■□□ 2
COL9A1-210ENST00000493682 MIA2Q96PC5 1412 aa27.53■■■□□ 2
COL9A1-210ENST00000493682 MAST1Q9Y2H9 1570 aa27.52■■■□□ 2
COL9A1-210ENST00000493682 ILDR2Q71H61 639 aa27.51■■□□□ 1.99
COL9A1-210ENST00000493682 NEURL4Q96JN8 1562 aa27.51■■□□□ 1.99
COL9A1-210ENST00000493682 POLR1AO95602 1720 aaPredicted RBP27.5■■□□□ 1.99
COL9A1-210ENST00000493682 NLRP1Q9C000 1473 aa27.5■■□□□ 1.99
COL9A1-210ENST00000493682 RNF17Q9BXT8 1623 aaKnown RBP27.49■■□□□ 1.99
COL9A1-210ENST00000493682 MYOM3Q5VTT5 1437 aa27.49■■□□□ 1.99
COL9A1-210ENST00000493682 THEMISQ8N1K5 641 aaPredicted RBP27.48■■□□□ 1.99
COL9A1-210ENST00000493682 SPATA31D1Q6ZQQ2 1576 aa27.48■■□□□ 1.99
COL9A1-210ENST00000493682 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.48■■□□□ 1.99
COL9A1-210ENST00000493682 ANKLE2Q86XL3 938 aa27.47■■□□□ 1.99
COL9A1-210ENST00000493682 ABCC3O15438 1527 aa27.46■■□□□ 1.99
COL9A1-210ENST00000493682 UGGT1Q9NYU2 1555 aa27.45■■□□□ 1.99
COL9A1-210ENST00000493682 EIF2AK4Q9P2K8 1649 aaKnown RBP27.44■■□□□ 1.98
COL9A1-210ENST00000493682 ZC3H13Q5T200 1668 aaKnown RBP27.43■■□□□ 1.98
COL9A1-210ENST00000493682 SHANK2Q9UPX8 1470 aa27.42■■□□□ 1.98
COL9A1-210ENST00000493682 MROH1Q8NDA8 1641 aa27.41■■□□□ 1.98
COL9A1-210ENST00000493682 CPS1P31327 1500 aa27.41■■□□□ 1.98
COL9A1-210ENST00000493682 MED14O60244 1454 aa27.38■■□□□ 1.97
COL9A1-210ENST00000493682 DEPDC5O75140 1603 aa27.38■■□□□ 1.97
COL9A1-210ENST00000493682 NPHP4O75161 1426 aaPredicted RBP27.38■■□□□ 1.97
COL9A1-210ENST00000493682 ERVK-7P63135 1459 aa27.38■■□□□ 1.97
COL9A1-210ENST00000493682 DUOX2Q9NRD8 1548 aa27.37■■□□□ 1.97
COL9A1-210ENST00000493682 VWDEQ8N2E2 1590 aa27.36■■□□□ 1.97
COL9A1-210ENST00000493682 SOCS7O14512 581 aa27.35■■□□□ 1.97
COL9A1-210ENST00000493682 KIF15Q9NS87 1388 aa27.33■■□□□ 1.97
COL9A1-210ENST00000493682 CEP152O94986 1710 aa27.33■■□□□ 1.96
COL9A1-210ENST00000493682 ABCC5O15440 1437 aa27.33■■□□□ 1.96
COL9A1-210ENST00000493682 TOM1O60784 492 aa27.31■■□□□ 1.96
COL9A1-210ENST00000493682 IQGAP1P46940 1657 aa27.3■■□□□ 1.96
COL9A1-210ENST00000493682 PIP4K2BP78356 416 aa27.3■■□□□ 1.96
COL9A1-210ENST00000493682 APLP2Q06481 763 aa27.3■■□□□ 1.96
COL9A1-210ENST00000493682 RRP7BPQ9NSQ0 103 aa27.3■■□□□ 1.96
COL9A1-210ENST00000493682 SCAF1Q9H7N4 1312 aaKnown RBP27.3■■□□□ 1.96
COL9A1-210ENST00000493682 PTPN23Q9H3S7 1636 aa27.3■■□□□ 1.96
COL9A1-210ENST00000493682 CROCC2H7BZ55 1655 aa27.29■■□□□ 1.96
COL9A1-210ENST00000493682 ERBINQ96RT1 1412 aa27.28■■□□□ 1.96
COL9A1-210ENST00000493682 PRDM15P57071 1507 aaPredicted RBP27.27■■□□□ 1.96
COL9A1-210ENST00000493682 HSPA1LP34931 641 aa27.26■■□□□ 1.95
COL9A1-210ENST00000493682 DAPK1P53355 1430 aa27.25■■□□□ 1.95
COL9A1-210ENST00000493682 ARHGAP31Q2M1Z3 1444 aa27.25■■□□□ 1.95
COL9A1-210ENST00000493682 CFAP65Q6ZU64 1925 aaKnown RBP27.25■■□□□ 1.95
COL9A1-210ENST00000493682 UBR1Q8IWV7 1749 aa27.24■■□□□ 1.95
COL9A1-210ENST00000493682 FGD6Q6ZV73 1430 aa27.23■■□□□ 1.95
COL9A1-210ENST00000493682 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.22■■□□□ 1.95
COL9A1-210ENST00000493682 SCAF11Q99590 1463 aaKnown RBP27.2■■□□□ 1.95
COL9A1-210ENST00000493682 STRCP1A6NGW2 1772 aa27.2■■□□□ 1.94
COL9A1-210ENST00000493682 ALKQ9UM73 1620 aa27.19■■□□□ 1.94
COL9A1-210ENST00000493682 LRRC7Q96NW7 1537 aa27.18■■□□□ 1.94
COL9A1-210ENST00000493682 LTKP29376 864 aa27.18■■□□□ 1.94
COL9A1-210ENST00000493682 ARHGAP23Q9P227 1491 aa27.18■■□□□ 1.94
COL9A1-210ENST00000493682 SLIT1O75093 1534 aa27.16■■□□□ 1.94
COL9A1-210ENST00000493682 TXNDC2Q86VQ3 553 aa27.16■■□□□ 1.94
COL9A1-210ENST00000493682 CHIC2Q9UKJ5 165 aa27.16■■□□□ 1.94
COL9A1-210ENST00000493682 KANK1Q14678 1352 aa27.16■■□□□ 1.94
COL9A1-210ENST00000493682 ANKRD30AQ9BXX3 1397 aa27.16■■□□□ 1.94
COL9A1-210ENST00000493682 SYNMO15061 1565 aa27.14■■□□□ 1.93
COL9A1-210ENST00000493682 EID1Q9Y6B2 187 aa27.11■■□□□ 1.93
COL9A1-210ENST00000493682 PIK3C2BO00750 1634 aa27.11■■□□□ 1.93
COL9A1-210ENST00000493682 LMTK2Q8IWU2 1503 aa27.11■■□□□ 1.93
COL9A1-210ENST00000493682 MED1Q15648 1581 aaPredicted RBP27.1■■□□□ 1.93
COL9A1-210ENST00000493682 TMEM2Q9UHN6 1383 aa27.09■■□□□ 1.93
COL9A1-210ENST00000493682 STAG3Q9UJ98 1225 aa27.07■■□□□ 1.92
COL9A1-210ENST00000493682 IDI1Q13907 227 aa27.06■■□□□ 1.92
COL9A1-210ENST00000493682 ADGRL2O95490 1459 aa27.04■■□□□ 1.92
COL9A1-210ENST00000493682 KDM5AP29375 1690 aaKnown RBP27.03■■□□□ 1.92
COL9A1-210ENST00000493682 EFCAB6Q5THR3 1501 aa27.03■■□□□ 1.92
COL9A1-210ENST00000493682 FAM50AQ14320 339 aaKnown RBP27.01■■□□□ 1.91
COL9A1-210ENST00000493682 NOS1P29475 1434 aa27■■□□□ 1.91
COL9A1-210ENST00000493682 XIRP1Q702N8 1843 aaKnown RBP26.96■■□□□ 1.91
COL9A1-210ENST00000493682 ANKRD50Q9ULJ7 1429 aa26.96■■□□□ 1.91
COL9A1-210ENST00000493682 ADGRB3O60242 1522 aa26.95■■□□□ 1.9
COL9A1-210ENST00000493682 SLC52A1Q9NWF4 448 aa26.94■■□□□ 1.9
COL9A1-210ENST00000493682 TET3O43151 1660 aa26.93■■□□□ 1.9
COL9A1-210ENST00000493682 SLC26A8Q96RN1 970 aa26.93■■□□□ 1.9
COL9A1-210ENST00000493682 KCNA6P17658 529 aa26.91■■□□□ 1.9
COL9A1-210ENST00000493682 RPRD2Q5VT52 1461 aaKnown RBP26.91■■□□□ 1.9
COL9A1-210ENST00000493682 TMEM94Q12767 1356 aa26.9■■□□□ 1.9
COL9A1-210ENST00000493682 FAM135BQ49AJ0 1406 aa26.85■■□□□ 1.89
COL9A1-210ENST00000493682 PROSER2Q86WR7 435 aaPredicted RBP26.85■■□□□ 1.89
COL9A1-210ENST00000493682 RBM33Q96EV2 1170 aaKnown RBP26.84■■□□□ 1.89
COL9A1-210ENST00000493682 BCANQ96GW7 911 aa26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms