RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 PZPP20742 1482 aa23.25■■□□□ 1.31
PRPF40A-211ENST00000493468 KDM5DQ9BY66 1539 aa23.25■■□□□ 1.31
PRPF40A-211ENST00000493468 MTUS2Q5JR59 1369 aa23.25■■□□□ 1.31
PRPF40A-211ENST00000493468 DHX29Q7Z478 1369 aaKnown RBP23.25■■□□□ 1.31
PRPF40A-211ENST00000493468 TOM1O60784 492 aa23.24■■□□□ 1.31
PRPF40A-211ENST00000493468 HSPA1LP34931 641 aa23.24■■□□□ 1.31
PRPF40A-211ENST00000493468 TNRQ92752 1358 aa23.24■■□□□ 1.31
PRPF40A-211ENST00000493468 EHBP1L1Q8N3D4 1523 aa23.23■■□□□ 1.31
PRPF40A-211ENST00000493468 VWDEQ8N2E2 1590 aa23.23■■□□□ 1.31
PRPF40A-211ENST00000493468 DEPDC5O75140 1603 aa23.22■■□□□ 1.31
PRPF40A-211ENST00000493468 MED14O60244 1454 aa23.19■■□□□ 1.3
PRPF40A-211ENST00000493468 NLRP1Q9C000 1473 aa23.19■■□□□ 1.3
PRPF40A-211ENST00000493468 ALKQ9UM73 1620 aa23.19■■□□□ 1.3
PRPF40A-211ENST00000493468 SCAF1Q9H7N4 1312 aaKnown RBP23.18■■□□□ 1.3
PRPF40A-211ENST00000493468 ZNF644Q9H582 1327 aaPredicted RBP23.17■■□□□ 1.3
PRPF40A-211ENST00000493468 PIP4K2BP78356 416 aa23.17■■□□□ 1.3
PRPF40A-211ENST00000493468 CEP162Q5TB80 1403 aa23.16■■□□□ 1.3
PRPF40A-211ENST00000493468 CCDC141Q6ZP82 1450 aa23.16■■□□□ 1.3
PRPF40A-211ENST00000493468 UGGT1Q9NYU2 1555 aa23.15■■□□□ 1.3
PRPF40A-211ENST00000493468 IQGAP1P46940 1657 aa23.15■■□□□ 1.3
PRPF40A-211ENST00000493468 FBXO31Q5XUX0 539 aaPredicted RBP23.14■■□□□ 1.29
PRPF40A-211ENST00000493468 ANKLE2Q86XL3 938 aa23.14■■□□□ 1.29
PRPF40A-211ENST00000493468 NPHP4O75161 1426 aaPredicted RBP23.13■■□□□ 1.29
PRPF40A-211ENST00000493468 MIA2Q96PC5 1412 aa23.13■■□□□ 1.29
PRPF40A-211ENST00000493468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.13■■□□□ 1.29
PRPF40A-211ENST00000493468 SYNMO15061 1565 aa23.12■■□□□ 1.29
PRPF40A-211ENST00000493468 KIF3BO15066 747 aa23.12■■□□□ 1.29
PRPF40A-211ENST00000493468 THEMISQ8N1K5 641 aaPredicted RBP23.12■■□□□ 1.29
PRPF40A-211ENST00000493468 RNF17Q9BXT8 1623 aaKnown RBP23.1■■□□□ 1.29
PRPF40A-211ENST00000493468 ZC3H13Q5T200 1668 aaKnown RBP23.09■■□□□ 1.29
PRPF40A-211ENST00000493468 WASHC2CQ9Y4E1 1318 aa23.09■■□□□ 1.29
PRPF40A-211ENST00000493468 CAMSAP2Q08AD1 1489 aa23.09■■□□□ 1.29
PRPF40A-211ENST00000493468 STRCP1A6NGW2 1772 aa23.09■■□□□ 1.29
PRPF40A-211ENST00000493468 RSPH4AQ5TD94 716 aa23.08■■□□□ 1.29
PRPF40A-211ENST00000493468 ARHGEF5Q12774 1597 aa23.08■■□□□ 1.29
PRPF40A-211ENST00000493468 PHF23Q9BUL5 403 aaPredicted RBP23.06■■□□□ 1.28
PRPF40A-211ENST00000493468 LRRC7Q96NW7 1537 aa23.05■■□□□ 1.28
PRPF40A-211ENST00000493468 NCOA2Q15596 1464 aa23.03■■□□□ 1.28
PRPF40A-211ENST00000493468 ABCC3O15438 1527 aa23.02■■□□□ 1.28
PRPF40A-211ENST00000493468 EIF2AK4Q9P2K8 1649 aaKnown RBP23.01■■□□□ 1.27
PRPF40A-211ENST00000493468 MAST1Q9Y2H9 1570 aa22.99■■□□□ 1.27
PRPF40A-211ENST00000493468 UBR1Q8IWV7 1749 aa22.98■■□□□ 1.27
PRPF40A-211ENST00000493468 ERVK-7P63135 1459 aa22.98■■□□□ 1.27
PRPF40A-211ENST00000493468 MROH1Q8NDA8 1641 aa22.95■■□□□ 1.26
PRPF40A-211ENST00000493468 TSPY4P0CV99 314 aa22.93■■□□□ 1.26
PRPF40A-211ENST00000493468 TSPY10P0CW01 314 aa22.93■■□□□ 1.26
PRPF40A-211ENST00000493468 XIRP1Q702N8 1843 aaKnown RBP22.93■■□□□ 1.26
PRPF40A-211ENST00000493468 SCAF11Q99590 1463 aaKnown RBP22.92■■□□□ 1.26
PRPF40A-211ENST00000493468 CEP152O94986 1710 aa22.92■■□□□ 1.26
PRPF40A-211ENST00000493468 SLIT1O75093 1534 aa22.91■■□□□ 1.26
PRPF40A-211ENST00000493468 ARHGAP23Q9P227 1491 aa22.91■■□□□ 1.26
PRPF40A-211ENST00000493468 CFAP65Q6ZU64 1925 aaKnown RBP22.88■■□□□ 1.25
PRPF40A-211ENST00000493468 RGS17Q9UGC6 210 aaPredicted RBP22.84■■□□□ 1.25
PRPF40A-211ENST00000493468 ARHGAP31Q2M1Z3 1444 aa22.83■■□□□ 1.25
PRPF40A-211ENST00000493468 PRDM15P57071 1507 aaPredicted RBP22.83■■□□□ 1.25
PRPF40A-211ENST00000493468 DUOX2Q9NRD8 1548 aa22.82■■□□□ 1.24
PRPF40A-211ENST00000493468 FAM135BQ49AJ0 1406 aa22.82■■□□□ 1.24
PRPF40A-211ENST00000493468 KDM5AP29375 1690 aaKnown RBP22.81■■□□□ 1.24
PRPF40A-211ENST00000493468 SENP3Q9H4L4 574 aaPredicted RBP22.81■■□□□ 1.24
PRPF40A-211ENST00000493468 LRRC9Q6ZRR7 1453 aa22.79■■□□□ 1.24
PRPF40A-211ENST00000493468 LTKP29376 864 aa22.79■■□□□ 1.24
PRPF40A-211ENST00000493468 PIK3C2BO00750 1634 aa22.78■■□□□ 1.24
PRPF40A-211ENST00000493468 TXNDC2Q86VQ3 553 aa22.77■■□□□ 1.24
PRPF40A-211ENST00000493468 CROCC2H7BZ55 1655 aa22.74■■□□□ 1.23
PRPF40A-211ENST00000493468 MYOM3Q5VTT5 1437 aa22.74■■□□□ 1.23
PRPF40A-211ENST00000493468 ERBINQ96RT1 1412 aa22.74■■□□□ 1.23
PRPF40A-211ENST00000493468 EID1Q9Y6B2 187 aa22.74■■□□□ 1.23
PRPF40A-211ENST00000493468 ROBO1Q9Y6N7 1651 aa22.74■■□□□ 1.23
PRPF40A-211ENST00000493468 TMEM2Q9UHN6 1383 aa22.74■■□□□ 1.23
PRPF40A-211ENST00000493468 MAP3K1Q13233 1512 aa22.72■■□□□ 1.23
PRPF40A-211ENST00000493468 TMEM94Q12767 1356 aa22.7■■□□□ 1.22
PRPF40A-211ENST00000493468 EFCAB6Q5THR3 1501 aa22.7■■□□□ 1.22
PRPF40A-211ENST00000493468 TET3O43151 1660 aa22.69■■□□□ 1.22
PRPF40A-211ENST00000493468 NWD1Q149M9 1564 aa22.69■■□□□ 1.22
PRPF40A-211ENST00000493468 VPS8Q8N3P4 1428 aa22.69■■□□□ 1.22
PRPF40A-211ENST00000493468 KIF15Q9NS87 1388 aa22.69■■□□□ 1.22
PRPF40A-211ENST00000493468 LMTK2Q8IWU2 1503 aa22.67■■□□□ 1.22
PRPF40A-211ENST00000493468 NKTRP30414 1462 aaKnown RBP22.67■■□□□ 1.22
PRPF40A-211ENST00000493468 POTEAQ6S8J7 498 aa22.67■■□□□ 1.22
PRPF40A-211ENST00000493468 KCNA6P17658 529 aa22.66■■□□□ 1.22
PRPF40A-211ENST00000493468 ADGRB3O60242 1522 aa22.62■■□□□ 1.21
PRPF40A-211ENST00000493468 KANK1Q14678 1352 aa22.62■■□□□ 1.21
PRPF40A-211ENST00000493468 ABCC5O15440 1437 aa22.61■■□□□ 1.21
PRPF40A-211ENST00000493468 PHLPP1O60346 1717 aa22.61■■□□□ 1.21
PRPF40A-211ENST00000493468 SETD1AO15047 1707 aaKnown RBP22.6■■□□□ 1.21
PRPF40A-211ENST00000493468 STAG3Q9UJ98 1225 aa22.6■■□□□ 1.21
PRPF40A-211ENST00000493468 PTPN23Q9H3S7 1636 aa22.59■■□□□ 1.21
PRPF40A-211ENST00000493468 NOS1P29475 1434 aa22.58■■□□□ 1.21
PRPF40A-211ENST00000493468 PROSER2Q86WR7 435 aaPredicted RBP22.58■■□□□ 1.21
PRPF40A-211ENST00000493468 IDI1Q13907 227 aa22.57■■□□□ 1.2
PRPF40A-211ENST00000493468 KANK4Q5T7N3 995 aaPredicted RBP22.57■■□□□ 1.2
PRPF40A-211ENST00000493468 MSH6P52701 1360 aa22.56■■□□□ 1.2
PRPF40A-211ENST00000493468 CHD2O14647 1828 aaKnown RBP22.56■■□□□ 1.2
PRPF40A-211ENST00000493468 DAPK1P53355 1430 aa22.56■■□□□ 1.2
PRPF40A-211ENST00000493468 JCADQ9P266 1359 aa22.55■■□□□ 1.2
PRPF40A-211ENST00000493468 RRP7BPQ9NSQ0 103 aa22.55■■□□□ 1.2
PRPF40A-211ENST00000493468 COL16A1Q07092 1604 aaPredicted RBP22.54■■□□□ 1.2
PRPF40A-211ENST00000493468 SLC26A8Q96RN1 970 aa22.54■■□□□ 1.2
PRPF40A-211ENST00000493468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.54■■□□□ 1.23e-8■■■■□ 24.9
PRPF40A-211ENST00000493468 SLAIN2Q9P270 581 aa22.5■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms