RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	KDM5D	Q9BY66	1539 aa		28.49	■■■□□ 2.15
NUP50-218	ENST00000493456	CCDC141	Q6ZP82	1450 aa		28.49	■■■□□ 2.15
NUP50-218	ENST00000493456	POLR1A	O95602	1720 aa	Predicted RBP	28.49	■■■□□ 2.15
NUP50-218	ENST00000493456	PZP	P20742	1482 aa		28.48	■■■□□ 2.15
NUP50-218	ENST00000493456	TNR	Q92752	1358 aa		28.48	■■■□□ 2.15
NUP50-218	ENST00000493456	CPS1	P31327	1500 aa		28.46	■■■□□ 2.15
NUP50-218	ENST00000493456	NEURL4	Q96JN8	1562 aa		28.45	■■■□□ 2.14
NUP50-218	ENST00000493456	KIF3B	O15066	747 aa		28.44	■■■□□ 2.14
NUP50-218	ENST00000493456	RSPH4A	Q5TD94	716 aa		28.43	■■■□□ 2.14
NUP50-218	ENST00000493456	CAMSAP2	Q08AD1	1489 aa		28.42	■■■□□ 2.14
NUP50-218	ENST00000493456	FBXO31	Q5XUX0	539 aa	Predicted RBP	28.4	■■■□□ 2.14
NUP50-218	ENST00000493456	NCOA2	Q15596	1464 aa		28.4	■■■□□ 2.14
NUP50-218	ENST00000493456	SHANK2	Q9UPX8	1470 aa		28.4	■■■□□ 2.14
NUP50-218	ENST00000493456	NLRP1	Q9C000	1473 aa		28.39	■■■□□ 2.13
NUP50-218	ENST00000493456	WASHC2C	Q9Y4E1	1318 aa		28.39	■■■□□ 2.13
NUP50-218	ENST00000493456	TOM1	O60784	492 aa		28.36	■■■□□ 2.13
NUP50-218	ENST00000493456	ANKLE2	Q86XL3	938 aa		28.36	■■■□□ 2.13
NUP50-218	ENST00000493456	ARHGEF5	Q12774	1597 aa		28.36	■■■□□ 2.13
NUP50-218	ENST00000493456	MIA2	Q96PC5	1412 aa		28.35	■■■□□ 2.13
NUP50-218	ENST00000493456	UGGT1	Q9NYU2	1555 aa		28.34	■■■□□ 2.13
NUP50-218	ENST00000493456	DEPDC5	O75140	1603 aa		28.34	■■■□□ 2.13
NUP50-218	ENST00000493456	THEMIS	Q8N1K5	641 aa	Predicted RBP	28.34	■■■□□ 2.13
NUP50-218	ENST00000493456	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	28.34	■■■□□ 2.13
NUP50-218	ENST00000493456	SCAF1	Q9H7N4	1312 aa	Known RBP	28.33	■■■□□ 2.13
NUP50-218	ENST00000493456	MED14	O60244	1454 aa		28.33	■■■□□ 2.13
NUP50-218	ENST00000493456	VWDE	Q8N2E2	1590 aa		28.32	■■■□□ 2.12
NUP50-218	ENST00000493456	HSPA1L	P34931	641 aa		28.31	■■■□□ 2.12
NUP50-218	ENST00000493456	MED1	Q15648	1581 aa	Predicted RBP	28.3	■■■□□ 2.12
NUP50-218	ENST00000493456	PIP4K2B	P78356	416 aa		28.3	■■■□□ 2.12
NUP50-218	ENST00000493456	NPHP4	O75161	1426 aa	Predicted RBP	28.29	■■■□□ 2.12
NUP50-218	ENST00000493456	TSPY4	P0CV99	314 aa		28.29	■■■□□ 2.12
NUP50-218	ENST00000493456	TSPY10	P0CW01	314 aa		28.29	■■■□□ 2.12
NUP50-218	ENST00000493456	RNF17	Q9BXT8	1623 aa	Known RBP	28.28	■■■□□ 2.12
NUP50-218	ENST00000493456	ZC3H13	Q5T200	1668 aa	Known RBP	28.27	■■■□□ 2.12
NUP50-218	ENST00000493456	IQGAP1	P46940	1657 aa		28.25	■■■□□ 2.11
NUP50-218	ENST00000493456	MAST1	Q9Y2H9	1570 aa		28.24	■■■□□ 2.11
NUP50-218	ENST00000493456	ABCC3	O15438	1527 aa		28.23	■■■□□ 2.11
NUP50-218	ENST00000493456	EIF2AK4	Q9P2K8	1649 aa	Known RBP	28.21	■■■□□ 2.11
NUP50-218	ENST00000493456	ALK	Q9UM73	1620 aa		28.18	■■■□□ 2.1
NUP50-218	ENST00000493456	SYNM	O15061	1565 aa		28.17	■■■□□ 2.1
NUP50-218	ENST00000493456	ERVK-7	P63135	1459 aa		28.17	■■■□□ 2.1
NUP50-218	ENST00000493456	LRRC9	Q6ZRR7	1453 aa		28.17	■■■□□ 2.1
NUP50-218	ENST00000493456	MROH1	Q8NDA8	1641 aa		28.13	■■■□□ 2.09
NUP50-218	ENST00000493456	LRRC7	Q96NW7	1537 aa		28.13	■■■□□ 2.09
NUP50-218	ENST00000493456	STRCP1	A6NGW2	1772 aa		28.11	■■■□□ 2.09
NUP50-218	ENST00000493456	VPS8	Q8N3P4	1428 aa		28.1	■■■□□ 2.09
NUP50-218	ENST00000493456	UBR1	Q8IWV7	1749 aa		28.09	■■■□□ 2.09
NUP50-218	ENST00000493456	PHF23	Q9BUL5	403 aa	Predicted RBP	28.08	■■■□□ 2.09
NUP50-218	ENST00000493456	DUOX2	Q9NRD8	1548 aa		28.08	■■■□□ 2.08
NUP50-218	ENST00000493456	CEP152	O94986	1710 aa		28.07	■■■□□ 2.08
NUP50-218	ENST00000493456	SCAF11	Q99590	1463 aa	Known RBP	28.07	■■■□□ 2.08
NUP50-218	ENST00000493456	MAP3K1	Q13233	1512 aa		28.06	■■■□□ 2.08
NUP50-218	ENST00000493456	MYOM3	Q5VTT5	1437 aa		28.05	■■■□□ 2.08
NUP50-218	ENST00000493456	SLIT1	O75093	1534 aa		28.02	■■■□□ 2.08
NUP50-218	ENST00000493456	ARHGAP23	Q9P227	1491 aa		28.02	■■■□□ 2.08
NUP50-218	ENST00000493456	ARHGAP31	Q2M1Z3	1444 aa		28.02	■■■□□ 2.08
NUP50-218	ENST00000493456	PRDM15	P57071	1507 aa	Predicted RBP	28.02	■■■□□ 2.08
NUP50-218	ENST00000493456	ERBIN	Q96RT1	1412 aa		27.98	■■■□□ 2.07
NUP50-218	ENST00000493456	KIF15	Q9NS87	1388 aa		27.97	■■■□□ 2.07
NUP50-218	ENST00000493456	CFAP65	Q6ZU64	1925 aa	Known RBP	27.95	■■■□□ 2.06
NUP50-218	ENST00000493456	KANK4	Q5T7N3	995 aa	Predicted RBP	27.95	■■■□□ 2.06
NUP50-218	ENST00000493456	TXNDC2	Q86VQ3	553 aa		27.95	■■■□□ 2.06
NUP50-218	ENST00000493456	LTK	P29376	864 aa		27.94	■■■□□ 2.06
NUP50-218	ENST00000493456	CROCC2	H7BZ55	1655 aa		27.94	■■■□□ 2.06
NUP50-218	ENST00000493456	EID1	Q9Y6B2	187 aa		27.93	■■■□□ 2.06
NUP50-218	ENST00000493456	SENP3	Q9H4L4	574 aa	Predicted RBP	27.91	■■■□□ 2.06
NUP50-218	ENST00000493456	PIK3C2B	O00750	1634 aa		27.89	■■■□□ 2.06
NUP50-218	ENST00000493456	TMEM2	Q9UHN6	1383 aa		27.88	■■■□□ 2.05
NUP50-218	ENST00000493456	KDM5A	P29375	1690 aa	Known RBP	27.88	■■■□□ 2.05
NUP50-218	ENST00000493456	XIRP1	Q702N8	1843 aa	Known RBP	27.88	■■■□□ 2.05
NUP50-218	ENST00000493456	ABCC5	O15440	1437 aa		27.88	■■■□□ 2.05
NUP50-218	ENST00000493456	KANK1	Q14678	1352 aa		27.86	■■■□□ 2.05
NUP50-218	ENST00000493456	PTPN23	Q9H3S7	1636 aa		27.85	■■■□□ 2.05
NUP50-218	ENST00000493456	RRP7BP	Q9NSQ0	103 aa		27.85	■■■□□ 2.05
NUP50-218	ENST00000493456	EFCAB6	Q5THR3	1501 aa		27.83	■■■□□ 2.05
NUP50-218	ENST00000493456	LMTK2	Q8IWU2	1503 aa		27.83	■■■□□ 2.05
NUP50-218	ENST00000493456	STAG3	Q9UJ98	1225 aa		27.83	■■■□□ 2.05
NUP50-218	ENST00000493456	DAPK1	P53355	1430 aa		27.83	■■■□□ 2.05
NUP50-218	ENST00000493456	FAM135B	Q49AJ0	1406 aa		27.83	■■■□□ 2.05
NUP50-218	ENST00000493456	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	27.82	■■■□□ 2.04	3e-6	■□□□□ 11.3
NUP50-218	ENST00000493456	LOC105371045	A0A1W2PR82	267 aa		27.78	■■■□□ 2.04
NUP50-218	ENST00000493456	TMEM94	Q12767	1356 aa		27.77	■■■□□ 2.04
NUP50-218	ENST00000493456	ANKRD30A	Q9BXX3	1397 aa		27.76	■■■□□ 2.03
NUP50-218	ENST00000493456	RGS17	Q9UGC6	210 aa	Predicted RBP	27.76	■■■□□ 2.03
NUP50-218	ENST00000493456	TET3	O43151	1660 aa		27.75	■■■□□ 2.03
NUP50-218	ENST00000493456	KCNA6	P17658	529 aa		27.75	■■■□□ 2.03
NUP50-218	ENST00000493456	IDI1	Q13907	227 aa		27.75	■■■□□ 2.03
NUP50-218	ENST00000493456	FGD6	Q6ZV73	1430 aa		27.75	■■■□□ 2.03
NUP50-218	ENST00000493456	ADGRB3	O60242	1522 aa		27.73	■■■□□ 2.03
NUP50-218	ENST00000493456	NKTR	P30414	1462 aa	Known RBP	27.72	■■■□□ 2.03
NUP50-218	ENST00000493456	APLP2	Q06481	763 aa		27.72	■■■□□ 2.03
NUP50-218	ENST00000493456	NOS1	P29475	1434 aa		27.72	■■■□□ 2.03
NUP50-218	ENST00000493456	NWD1	Q149M9	1564 aa		27.71	■■■□□ 2.03
NUP50-218	ENST00000493456	ROBO1	Q9Y6N7	1651 aa		27.71	■■■□□ 2.03
NUP50-218	ENST00000493456	PROSER2	Q86WR7	435 aa	Predicted RBP	27.68	■■■□□ 2.02
NUP50-218	ENST00000493456	SLC26A8	Q96RN1	970 aa		27.67	■■■□□ 2.02
NUP50-218	ENST00000493456	SLC52A1	Q9NWF4	448 aa		27.67	■■■□□ 2.02
NUP50-218	ENST00000493456	CHIC2	Q9UKJ5	165 aa		27.65	■■■□□ 2.02
NUP50-218	ENST00000493456	RPRD2	Q5VT52	1461 aa	Known RBP	27.64	■■■□□ 2.02
NUP50-218	ENST00000493456	ADGRL2	O95490	1459 aa		27.64	■■■□□ 2.01

Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms