RNA–Protein interactions for RNA: ENST00000492858.6

GPNMB-214, Transcript of glycoprotein nmb, humanhuman

TSL 5

Gene GPNMB, Length 721 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-214ENST00000492858 POLR1AO95602 1720 aaPredicted RBP19.75■□□□□ 0.75
GPNMB-214ENST00000492858 ANKLE2Q86XL3 938 aa19.74■□□□□ 0.75
GPNMB-214ENST00000492858 ADGBQ8N7X0 1667 aa19.73■□□□□ 0.75
GPNMB-214ENST00000492858 SENP3Q9H4L4 574 aaPredicted RBP19.73■□□□□ 0.75
GPNMB-214ENST00000492858 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.72■□□□□ 0.75
GPNMB-214ENST00000492858 VWDEQ8N2E2 1590 aa19.72■□□□□ 0.75
GPNMB-214ENST00000492858 ALKQ9UM73 1620 aa19.71■□□□□ 0.75
GPNMB-214ENST00000492858 ZNF644Q9H582 1327 aaPredicted RBP19.7■□□□□ 0.74
GPNMB-214ENST00000492858 DHX29Q7Z478 1369 aaKnown RBP19.7■□□□□ 0.74
GPNMB-214ENST00000492858 PZPP20742 1482 aa19.69■□□□□ 0.74
GPNMB-214ENST00000492858 THEMISQ8N1K5 641 aaPredicted RBP19.69■□□□□ 0.74
GPNMB-214ENST00000492858 NPHP4O75161 1426 aaPredicted RBP19.68■□□□□ 0.74
GPNMB-214ENST00000492858 KIF3BO15066 747 aa19.68■□□□□ 0.74
GPNMB-214ENST00000492858 MTUS2Q5JR59 1369 aa19.67■□□□□ 0.74
GPNMB-214ENST00000492858 RTEL1-TNFRSF6BF6WH68 1400 aa19.67■□□□□ 0.74
GPNMB-214ENST00000492858 MBD5Q9P267 1494 aa19.67■□□□□ 0.74
GPNMB-214ENST00000492858 KDM5DQ9BY66 1539 aa19.66■□□□□ 0.74
GPNMB-214ENST00000492858 MED14O60244 1454 aa19.66■□□□□ 0.74
GPNMB-214ENST00000492858 WASHC2CQ9Y4E1 1318 aa19.65■□□□□ 0.74
GPNMB-214ENST00000492858 MIA2Q96PC5 1412 aa19.65■□□□□ 0.74
GPNMB-214ENST00000492858 FAM135AQ9P2D6 1515 aa19.65■□□□□ 0.74
GPNMB-214ENST00000492858 NLRP1Q9C000 1473 aa19.64■□□□□ 0.73
GPNMB-214ENST00000492858 UGGT1Q9NYU2 1555 aa19.64■□□□□ 0.73
GPNMB-214ENST00000492858 DEPDC5O75140 1603 aa19.63■□□□□ 0.73
GPNMB-214ENST00000492858 LRRC7Q96NW7 1537 aa19.61■□□□□ 0.73
GPNMB-214ENST00000492858 TIAM1Q13009 1591 aa19.61■□□□□ 0.73
GPNMB-214ENST00000492858 RGS17Q9UGC6 210 aaPredicted RBP19.6■□□□□ 0.73
GPNMB-214ENST00000492858 IQGAP1P46940 1657 aa19.59■□□□□ 0.73
GPNMB-214ENST00000492858 RNF17Q9BXT8 1623 aaKnown RBP19.58■□□□□ 0.73
GPNMB-214ENST00000492858 CHIC1Q5VXU3 224 aa19.58■□□□□ 0.72
GPNMB-214ENST00000492858 CCDC141Q6ZP82 1450 aa19.56■□□□□ 0.72
GPNMB-214ENST00000492858 STRCP1A6NGW2 1772 aa19.56■□□□□ 0.72
GPNMB-214ENST00000492858 SYNMO15061 1565 aa19.55■□□□□ 0.72
GPNMB-214ENST00000492858 EHBP1L1Q8N3D4 1523 aa19.52■□□□□ 0.72
GPNMB-214ENST00000492858 CEP162Q5TB80 1403 aa19.51■□□□□ 0.71
GPNMB-214ENST00000492858 RSPH4AQ5TD94 716 aa19.49■□□□□ 0.71
GPNMB-214ENST00000492858 CAMSAP2Q08AD1 1489 aa19.48■□□□□ 0.71
GPNMB-214ENST00000492858 POTEAQ6S8J7 498 aa19.47■□□□□ 0.71
GPNMB-214ENST00000492858 ERVK-7P63135 1459 aa19.47■□□□□ 0.71
GPNMB-214ENST00000492858 ABCC3O15438 1527 aa19.46■□□□□ 0.71
GPNMB-214ENST00000492858 SCAF11Q99590 1463 aaKnown RBP19.46■□□□□ 0.71
GPNMB-214ENST00000492858 ZC3H13Q5T200 1668 aaKnown RBP19.46■□□□□ 0.71
GPNMB-214ENST00000492858 TSPY4P0CV99 314 aa19.45■□□□□ 0.7
GPNMB-214ENST00000492858 TSPY10P0CW01 314 aa19.45■□□□□ 0.7
GPNMB-214ENST00000492858 LTKP29376 864 aa19.43■□□□□ 0.7
GPNMB-214ENST00000492858 TXNDC2Q86VQ3 553 aa19.42■□□□□ 0.7
GPNMB-214ENST00000492858 FAM135BQ49AJ0 1406 aa19.42■□□□□ 0.7
GPNMB-214ENST00000492858 NCOA2Q15596 1464 aa19.41■□□□□ 0.7
GPNMB-214ENST00000492858 UBR1Q8IWV7 1749 aa19.4■□□□□ 0.7
GPNMB-214ENST00000492858 ARHGEF5Q12774 1597 aa19.4■□□□□ 0.7
GPNMB-214ENST00000492858 ARHGAP23Q9P227 1491 aa19.39■□□□□ 0.69
GPNMB-214ENST00000492858 XIRP1Q702N8 1843 aaKnown RBP19.37■□□□□ 0.69
GPNMB-214ENST00000492858 SLIT1O75093 1534 aa19.37■□□□□ 0.69
GPNMB-214ENST00000492858 EID1Q9Y6B2 187 aa19.37■□□□□ 0.69
GPNMB-214ENST00000492858 TMEM94Q12767 1356 aa19.35■□□□□ 0.69
GPNMB-214ENST00000492858 MROH1Q8NDA8 1641 aa19.34■□□□□ 0.69
GPNMB-214ENST00000492858 EIF2AK4Q9P2K8 1649 aaKnown RBP19.33■□□□□ 0.68
GPNMB-214ENST00000492858 CEP152O94986 1710 aa19.32■□□□□ 0.68
GPNMB-214ENST00000492858 ROBO1Q9Y6N7 1651 aa19.31■□□□□ 0.68
GPNMB-214ENST00000492858 MAST1Q9Y2H9 1570 aa19.31■□□□□ 0.68
GPNMB-214ENST00000492858 SETD1AO15047 1707 aaKnown RBP19.31■□□□□ 0.68
GPNMB-214ENST00000492858 TMEM2Q9UHN6 1383 aa19.31■□□□□ 0.68
GPNMB-214ENST00000492858 CFAP65Q6ZU64 1925 aaKnown RBP19.3■□□□□ 0.68
GPNMB-214ENST00000492858 RBM33Q96EV2 1170 aaKnown RBP19.3■□□□□ 0.68
GPNMB-214ENST00000492858 PROSER2Q86WR7 435 aaPredicted RBP19.29■□□□□ 0.68
GPNMB-214ENST00000492858 KCNA6P17658 529 aa19.28■□□□□ 0.68
GPNMB-214ENST00000492858 STAG3Q9UJ98 1225 aa19.28■□□□□ 0.68
GPNMB-214ENST00000492858 MAP3K1Q13233 1512 aa19.28■□□□□ 0.68
GPNMB-214ENST00000492858 ARHGAP31Q2M1Z3 1444 aa19.27■□□□□ 0.68
GPNMB-214ENST00000492858 LRRC9Q6ZRR7 1453 aa19.27■□□□□ 0.67
GPNMB-214ENST00000492858 SLC26A8Q96RN1 970 aa19.26■□□□□ 0.67
GPNMB-214ENST00000492858 PIK3C2BO00750 1634 aa19.25■□□□□ 0.67
GPNMB-214ENST00000492858 DUOX2Q9NRD8 1548 aa19.25■□□□□ 0.67
GPNMB-214ENST00000492858 JCADQ9P266 1359 aa19.24■□□□□ 0.67
GPNMB-214ENST00000492858 PRDM15P57071 1507 aaPredicted RBP19.23■□□□□ 0.67
GPNMB-214ENST00000492858 MSH6P52701 1360 aa19.22■□□□□ 0.67
GPNMB-214ENST00000492858 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.22■□□□□ 0.67
GPNMB-214ENST00000492858 SRCAPQ6ZRS2 3230 aa19.21■□□□□ 0.67
GPNMB-214ENST00000492858 EFCAB6Q5THR3 1501 aa19.21■□□□□ 0.67
GPNMB-214ENST00000492858 SLAIN2Q9P270 581 aa19.21■□□□□ 0.67
GPNMB-214ENST00000492858 NKTRP30414 1462 aaKnown RBP19.21■□□□□ 0.67
GPNMB-214ENST00000492858 KIF15Q9NS87 1388 aa19.2■□□□□ 0.66
GPNMB-214ENST00000492858 UPF1Q92900 1129 aaKnown RBP eCLIP19.2■□□□□ 0.66
GPNMB-214ENST00000492858 TET3O43151 1660 aa19.2■□□□□ 0.66
GPNMB-214ENST00000492858 PHLPP1O60346 1717 aa19.2■□□□□ 0.66
GPNMB-214ENST00000492858 IDI1Q13907 227 aa19.19■□□□□ 0.66
GPNMB-214ENST00000492858 MYOM3Q5VTT5 1437 aa19.17■□□□□ 0.66
GPNMB-214ENST00000492858 ERBINQ96RT1 1412 aa19.17■□□□□ 0.66
GPNMB-214ENST00000492858 TRIM52Q96A61 297 aa19.17■□□□□ 0.66
GPNMB-214ENST00000492858 BCANQ96GW7 911 aa19.17■□□□□ 0.66
GPNMB-214ENST00000492858 RRP7BPQ9NSQ0 103 aa19.17■□□□□ 0.66
GPNMB-214ENST00000492858 NWD1Q149M9 1564 aa19.17■□□□□ 0.66
GPNMB-214ENST00000492858 MEX3CQ5U5Q3 659 aaKnown RBP19.16■□□□□ 0.66
GPNMB-214ENST00000492858 KANK1Q14678 1352 aa19.16■□□□□ 0.66
GPNMB-214ENST00000492858 LRP6O75581 1613 aa19.14■□□□□ 0.66
GPNMB-214ENST00000492858 KDM5AP29375 1690 aaKnown RBP19.14■□□□□ 0.66
GPNMB-214ENST00000492858 ZNF772Q68DY9 489 aaPredicted RBP19.14■□□□□ 0.65
GPNMB-214ENST00000492858 SPATA31A6Q5VVP1 1343 aa19.13■□□□□ 0.65
GPNMB-214ENST00000492858 COL16A1Q07092 1604 aaPredicted RBP19.13■□□□□ 0.65
GPNMB-214ENST00000492858 ADGRB3O60242 1522 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms