RNA–Protein interactions for RNA: ENST00000492506.1

HDAC3-213, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 830 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-213ENST00000492506 FBXO31Q5XUX0 539 aaPredicted RBP21.22■□□□□ 0.99
HDAC3-213ENST00000492506 PZPP20742 1482 aa21.21■□□□□ 0.99
HDAC3-213ENST00000492506 CPS1P31327 1500 aa21.21■□□□□ 0.99
HDAC3-213ENST00000492506 CEP162Q5TB80 1403 aa21.21■□□□□ 0.99
HDAC3-213ENST00000492506 SHANK2Q9UPX8 1470 aa21.2■□□□□ 0.98
HDAC3-213ENST00000492506 KDM5DQ9BY66 1539 aa21.2■□□□□ 0.98
HDAC3-213ENST00000492506 FAM135AQ9P2D6 1515 aa21.2■□□□□ 0.98
HDAC3-213ENST00000492506 TNRQ92752 1358 aa21.2■□□□□ 0.98
HDAC3-213ENST00000492506 MED1Q15648 1581 aaPredicted RBP21.19■□□□□ 0.98
HDAC3-213ENST00000492506 VWDEQ8N2E2 1590 aa21.19■□□□□ 0.98
HDAC3-213ENST00000492506 HSPA1LP34931 641 aa21.18■□□□□ 0.98
HDAC3-213ENST00000492506 KIF3BO15066 747 aa21.17■□□□□ 0.98
HDAC3-213ENST00000492506 ALKQ9UM73 1620 aa21.17■□□□□ 0.98
HDAC3-213ENST00000492506 CCDC141Q6ZP82 1450 aa21.16■□□□□ 0.98
HDAC3-213ENST00000492506 DEPDC5O75140 1603 aa21.15■□□□□ 0.98
HDAC3-213ENST00000492506 CAMSAP2Q08AD1 1489 aa21.14■□□□□ 0.98
HDAC3-213ENST00000492506 MED14O60244 1454 aa21.13■□□□□ 0.97
HDAC3-213ENST00000492506 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.13■□□□□ 0.97
HDAC3-213ENST00000492506 TOM1O60784 492 aa21.13■□□□□ 0.97
HDAC3-213ENST00000492506 PIP4K2BP78356 416 aa21.13■□□□□ 0.97
HDAC3-213ENST00000492506 STRCP1A6NGW2 1772 aa21.13■□□□□ 0.97
HDAC3-213ENST00000492506 MIA2Q96PC5 1412 aa21.12■□□□□ 0.97
HDAC3-213ENST00000492506 NLRP1Q9C000 1473 aa21.12■□□□□ 0.97
HDAC3-213ENST00000492506 UGGT1Q9NYU2 1555 aa21.11■□□□□ 0.97
HDAC3-213ENST00000492506 SCAF1Q9H7N4 1312 aaKnown RBP21.11■□□□□ 0.97
HDAC3-213ENST00000492506 WASHC2CQ9Y4E1 1318 aa21.11■□□□□ 0.97
HDAC3-213ENST00000492506 NCOA2Q15596 1464 aa21.11■□□□□ 0.97
HDAC3-213ENST00000492506 ARHGEF5Q12774 1597 aa21.1■□□□□ 0.97
HDAC3-213ENST00000492506 IQGAP1P46940 1657 aa21.1■□□□□ 0.97
HDAC3-213ENST00000492506 ANKLE2Q86XL3 938 aa21.1■□□□□ 0.97
HDAC3-213ENST00000492506 THEMISQ8N1K5 641 aaPredicted RBP21.09■□□□□ 0.97
HDAC3-213ENST00000492506 NPHP4O75161 1426 aaPredicted RBP21.09■□□□□ 0.97
HDAC3-213ENST00000492506 RNF17Q9BXT8 1623 aaKnown RBP21.08■□□□□ 0.97
HDAC3-213ENST00000492506 RSPH4AQ5TD94 716 aa21.08■□□□□ 0.97
HDAC3-213ENST00000492506 ZC3H13Q5T200 1668 aaKnown RBP21.05■□□□□ 0.96
HDAC3-213ENST00000492506 ABCC3O15438 1527 aa21.04■□□□□ 0.96
HDAC3-213ENST00000492506 CFAP65Q6ZU64 1925 aaKnown RBP21.03■□□□□ 0.96
HDAC3-213ENST00000492506 MROH1Q8NDA8 1641 aa21.02■□□□□ 0.96
HDAC3-213ENST00000492506 LRRC7Q96NW7 1537 aa21.02■□□□□ 0.96
HDAC3-213ENST00000492506 MAST1Q9Y2H9 1570 aa21.02■□□□□ 0.95
HDAC3-213ENST00000492506 UBR1Q8IWV7 1749 aa21.01■□□□□ 0.95
HDAC3-213ENST00000492506 EIF2AK4Q9P2K8 1649 aaKnown RBP21■□□□□ 0.95
HDAC3-213ENST00000492506 SYNMO15061 1565 aa21■□□□□ 0.95
HDAC3-213ENST00000492506 CEP152O94986 1710 aa20.99■□□□□ 0.95
HDAC3-213ENST00000492506 ERVK-7P63135 1459 aa20.99■□□□□ 0.95
HDAC3-213ENST00000492506 TSPY4P0CV99 314 aa20.98■□□□□ 0.95
HDAC3-213ENST00000492506 TSPY10P0CW01 314 aa20.98■□□□□ 0.95
HDAC3-213ENST00000492506 XIRP1Q702N8 1843 aaKnown RBP20.97■□□□□ 0.95
HDAC3-213ENST00000492506 LRRC9Q6ZRR7 1453 aa20.92■□□□□ 0.94
HDAC3-213ENST00000492506 PHF23Q9BUL5 403 aaPredicted RBP20.91■□□□□ 0.94
HDAC3-213ENST00000492506 SCAF11Q99590 1463 aaKnown RBP20.9■□□□□ 0.94
HDAC3-213ENST00000492506 ARHGAP23Q9P227 1491 aa20.9■□□□□ 0.94
HDAC3-213ENST00000492506 SLIT1O75093 1534 aa20.89■□□□□ 0.94
HDAC3-213ENST00000492506 LTKP29376 864 aa20.87■□□□□ 0.93
HDAC3-213ENST00000492506 SENP3Q9H4L4 574 aaPredicted RBP20.87■□□□□ 0.93
HDAC3-213ENST00000492506 DUOX2Q9NRD8 1548 aa20.86■□□□□ 0.93
HDAC3-213ENST00000492506 PRDM15P57071 1507 aaPredicted RBP20.85■□□□□ 0.93
HDAC3-213ENST00000492506 ARHGAP31Q2M1Z3 1444 aa20.85■□□□□ 0.93
HDAC3-213ENST00000492506 RGS17Q9UGC6 210 aaPredicted RBP20.84■□□□□ 0.93
HDAC3-213ENST00000492506 PIK3C2BO00750 1634 aa20.83■□□□□ 0.93
HDAC3-213ENST00000492506 VPS8Q8N3P4 1428 aa20.83■□□□□ 0.93
HDAC3-213ENST00000492506 CROCC2H7BZ55 1655 aa20.83■□□□□ 0.92
HDAC3-213ENST00000492506 MYOM3Q5VTT5 1437 aa20.82■□□□□ 0.92
HDAC3-213ENST00000492506 KANK4Q5T7N3 995 aaPredicted RBP20.82■□□□□ 0.92
HDAC3-213ENST00000492506 TXNDC2Q86VQ3 553 aa20.82■□□□□ 0.92
HDAC3-213ENST00000492506 MAP3K1Q13233 1512 aa20.82■□□□□ 0.92
HDAC3-213ENST00000492506 KDM5AP29375 1690 aaKnown RBP20.8■□□□□ 0.92
HDAC3-213ENST00000492506 KIF15Q9NS87 1388 aa20.77■□□□□ 0.92
HDAC3-213ENST00000492506 ERBINQ96RT1 1412 aa20.77■□□□□ 0.91
HDAC3-213ENST00000492506 TMEM2Q9UHN6 1383 aa20.76■□□□□ 0.91
HDAC3-213ENST00000492506 FAM135BQ49AJ0 1406 aa20.76■□□□□ 0.91
HDAC3-213ENST00000492506 ABCC5O15440 1437 aa20.75■□□□□ 0.91
HDAC3-213ENST00000492506 TET3O43151 1660 aa20.74■□□□□ 0.91
HDAC3-213ENST00000492506 EID1Q9Y6B2 187 aa20.73■□□□□ 0.91
HDAC3-213ENST00000492506 ROBO1Q9Y6N7 1651 aa20.73■□□□□ 0.91
HDAC3-213ENST00000492506 EFCAB6Q5THR3 1501 aa20.72■□□□□ 0.91
HDAC3-213ENST00000492506 TMEM94Q12767 1356 aa20.72■□□□□ 0.91
HDAC3-213ENST00000492506 PTPN23Q9H3S7 1636 aa20.71■□□□□ 0.91
HDAC3-213ENST00000492506 RRP7BPQ9NSQ0 103 aa20.71■□□□□ 0.91
HDAC3-213ENST00000492506 LMTK2Q8IWU2 1503 aa20.71■□□□□ 0.91
HDAC3-213ENST00000492506 IDI1Q13907 227 aa20.69■□□□□ 0.9
HDAC3-213ENST00000492506 KCNA6P17658 529 aa20.68■□□□□ 0.9
HDAC3-213ENST00000492506 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.68■□□□□ 0.94e-9■■□□□ 11.7
HDAC3-213ENST00000492506 DAPK1P53355 1430 aa20.68■□□□□ 0.9
HDAC3-213ENST00000492506 NWD1Q149M9 1564 aa20.68■□□□□ 0.9
HDAC3-213ENST00000492506 POTEAQ6S8J7 498 aa20.67■□□□□ 0.9
HDAC3-213ENST00000492506 LOC105371045A0A1W2PR82 267 aa20.66■□□□□ 0.9
HDAC3-213ENST00000492506 NOS1P29475 1434 aa20.65■□□□□ 0.9
HDAC3-213ENST00000492506 KANK1Q14678 1352 aa20.65■□□□□ 0.9
HDAC3-213ENST00000492506 ADGRB3O60242 1522 aa20.64■□□□□ 0.9
HDAC3-213ENST00000492506 RBM33Q96EV2 1170 aaKnown RBP20.64■□□□□ 0.89
HDAC3-213ENST00000492506 SLC26A8Q96RN1 970 aa20.64■□□□□ 0.89
HDAC3-213ENST00000492506 STAG3Q9UJ98 1225 aa20.64■□□□□ 0.89
HDAC3-213ENST00000492506 MYO5BQ9ULV0 1848 aa20.64■□□□□ 0.89
HDAC3-213ENST00000492506 NKTRP30414 1462 aaKnown RBP20.63■□□□□ 0.89
HDAC3-213ENST00000492506 CHD2O14647 1828 aaKnown RBP20.62■□□□□ 0.89
HDAC3-213ENST00000492506 PROSER2Q86WR7 435 aaPredicted RBP20.62■□□□□ 0.89
HDAC3-213ENST00000492506 PHLPP1O60346 1717 aa20.61■□□□□ 0.89
HDAC3-213ENST00000492506 FGD6Q6ZV73 1430 aa20.6■□□□□ 0.89
HDAC3-213ENST00000492506 SETD1AO15047 1707 aaKnown RBP20.59■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 187.3 ms