RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 MYO3AQ8NEV4 1616 aa13.25□□□□□ -0.29
SMARCB1-207ENST00000491967 PLA2R1Q13018 1463 aa13.25□□□□□ -0.29
SMARCB1-207ENST00000491967 LTBP4Q8N2S1 1624 aa13.24□□□□□ -0.29
SMARCB1-207ENST00000491967 RNF17Q9BXT8 1623 aaKnown RBP13.24□□□□□ -0.29
SMARCB1-207ENST00000491967 CEP170BQ9Y4F5 1589 aaPredicted RBP13.24□□□□□ -0.29
SMARCB1-207ENST00000491967 KDM5DQ9BY66 1539 aa13.23□□□□□ -0.29
SMARCB1-207ENST00000491967 PZPP20742 1482 aa13.23□□□□□ -0.29
SMARCB1-207ENST00000491967 TCOF1Q13428 1488 aaKnown RBP13.23□□□□□ -0.29
SMARCB1-207ENST00000491967 SOCS7O14512 581 aa13.22□□□□□ -0.29
SMARCB1-207ENST00000491967 PKD2Q13563 968 aa13.22□□□□□ -0.29
SMARCB1-207ENST00000491967 A2ML1A8K2U0 1454 aa13.22□□□□□ -0.29
SMARCB1-207ENST00000491967 EIF2AK4Q9P2K8 1649 aaKnown RBP13.21□□□□□ -0.29
SMARCB1-207ENST00000491967 DNMT1P26358 1616 aaKnown RBP13.21□□□□□ -0.3
SMARCB1-207ENST00000491967 WASHC2CQ9Y4E1 1318 aa13.2□□□□□ -0.3
SMARCB1-207ENST00000491967 FBXO31Q5XUX0 539 aaPredicted RBP13.2□□□□□ -0.3
SMARCB1-207ENST00000491967 ABCC5O15440 1437 aa13.2□□□□□ -0.3
SMARCB1-207ENST00000491967 IQSEC2Q5JU85 1478 aa13.19□□□□□ -0.3
SMARCB1-207ENST00000491967 SHANK2Q9UPX8 1470 aa13.19□□□□□ -0.3
SMARCB1-207ENST00000491967 MROH1Q8NDA8 1641 aa13.19□□□□□ -0.3
SMARCB1-207ENST00000491967 TNRQ92752 1358 aa13.19□□□□□ -0.3
SMARCB1-207ENST00000491967 DUOX2Q9NRD8 1548 aa13.18□□□□□ -0.3
SMARCB1-207ENST00000491967 NCKAP5LQ9HCH0 1330 aa13.18□□□□□ -0.3
SMARCB1-207ENST00000491967 ABCC3O15438 1527 aa13.18□□□□□ -0.3
SMARCB1-207ENST00000491967 ZC3H13Q5T200 1668 aaKnown RBP13.18□□□□□ -0.3
SMARCB1-207ENST00000491967 PTPN23Q9H3S7 1636 aa13.17□□□□□ -0.3
SMARCB1-207ENST00000491967 FGD6Q6ZV73 1430 aa13.17□□□□□ -0.3
SMARCB1-207ENST00000491967 CROCC2H7BZ55 1655 aa13.17□□□□□ -0.3
SMARCB1-207ENST00000491967 NLRP1Q9C000 1473 aa13.16□□□□□ -0.3
SMARCB1-207ENST00000491967 APLP2Q06481 763 aa13.15□□□□□ -0.3
SMARCB1-207ENST00000491967 ILDR2Q71H61 639 aa13.15□□□□□ -0.3
SMARCB1-207ENST00000491967 SPATA31D1Q6ZQQ2 1576 aa13.15□□□□□ -0.3
SMARCB1-207ENST00000491967 DAPK1P53355 1430 aa13.13□□□□□ -0.31
SMARCB1-207ENST00000491967 ERBINQ96RT1 1412 aa13.13□□□□□ -0.31
SMARCB1-207ENST00000491967 NEURL4Q96JN8 1562 aa13.13□□□□□ -0.31
SMARCB1-207ENST00000491967 KIF15Q9NS87 1388 aa13.13□□□□□ -0.31
SMARCB1-207ENST00000491967 PRDM15P57071 1507 aaPredicted RBP13.13□□□□□ -0.31
SMARCB1-207ENST00000491967 ARHGAP31Q2M1Z3 1444 aa13.13□□□□□ -0.31
SMARCB1-207ENST00000491967 MED14O60244 1454 aa13.12□□□□□ -0.31
SMARCB1-207ENST00000491967 DISP3Q9P2K9 1392 aa13.12□□□□□ -0.31
SMARCB1-207ENST00000491967 THEMISQ8N1K5 641 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-207ENST00000491967 POLR1AO95602 1720 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-207ENST00000491967 DEPDC5O75140 1603 aa13.12□□□□□ -0.31
SMARCB1-207ENST00000491967 ZNF335Q9H4Z2 1342 aaPredicted RBP13.12□□□□□ -0.31
SMARCB1-207ENST00000491967 ERVK-7P63135 1459 aa13.11□□□□□ -0.31
SMARCB1-207ENST00000491967 RRP7BPQ9NSQ0 103 aa13.1□□□□□ -0.31
SMARCB1-207ENST00000491967 VWDEQ8N2E2 1590 aa13.1□□□□□ -0.31
SMARCB1-207ENST00000491967 UGGT1Q9NYU2 1555 aa13.1□□□□□ -0.31
SMARCB1-207ENST00000491967 CEP152O94986 1710 aa13.1□□□□□ -0.31
SMARCB1-207ENST00000491967 CFAP65Q6ZU64 1925 aaKnown RBP13.09□□□□□ -0.31
SMARCB1-207ENST00000491967 ANKLE2Q86XL3 938 aa13.09□□□□□ -0.31
SMARCB1-207ENST00000491967 ADGRL2O95490 1459 aa13.09□□□□□ -0.31
SMARCB1-207ENST00000491967 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.08□□□□□ -0.31
SMARCB1-207ENST00000491967 LMTK2Q8IWU2 1503 aa13.08□□□□□ -0.32
SMARCB1-207ENST00000491967 ANKRD30AQ9BXX3 1397 aa13.07□□□□□ -0.32
SMARCB1-207ENST00000491967 UBR1Q8IWV7 1749 aa13.06□□□□□ -0.32
SMARCB1-207ENST00000491967 ARHGAP23Q9P227 1491 aa13.04□□□□□ -0.32
SMARCB1-207ENST00000491967 CPS1P31327 1500 aa13.04□□□□□ -0.32
SMARCB1-207ENST00000491967 NPHP4O75161 1426 aaPredicted RBP13.04□□□□□ -0.32
SMARCB1-207ENST00000491967 SLIT1O75093 1534 aa13.03□□□□□ -0.32
SMARCB1-207ENST00000491967 KDM5AP29375 1690 aaKnown RBP13.03□□□□□ -0.32
SMARCB1-207ENST00000491967 CHIC2Q9UKJ5 165 aa13.03□□□□□ -0.32
SMARCB1-207ENST00000491967 IQGAP1P46940 1657 aa13.02□□□□□ -0.32
SMARCB1-207ENST00000491967 KANK1Q14678 1352 aa13.01□□□□□ -0.33
SMARCB1-207ENST00000491967 NOS1P29475 1434 aa13.01□□□□□ -0.33
SMARCB1-207ENST00000491967 ANKRD50Q9ULJ7 1429 aa13□□□□□ -0.33
SMARCB1-207ENST00000491967 STRCP1A6NGW2 1772 aa12.99□□□□□ -0.33
SMARCB1-207ENST00000491967 EFCAB6Q5THR3 1501 aa12.99□□□□□ -0.33
SMARCB1-207ENST00000491967 LTKP29376 864 aa12.99□□□□□ -0.33
SMARCB1-207ENST00000491967 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.99□□□□□ -0.336e-9■□□□□ 8.2
SMARCB1-207ENST00000491967 PIK3C2BO00750 1634 aa12.99□□□□□ -0.33
SMARCB1-207ENST00000491967 SCAF11Q99590 1463 aaKnown RBP12.98□□□□□ -0.33
SMARCB1-207ENST00000491967 ROCK1Q13464 1354 aa12.98□□□□□ -0.33
SMARCB1-207ENST00000491967 IDI1Q13907 227 aa12.98□□□□□ -0.33
SMARCB1-207ENST00000491967 FAM50AQ14320 339 aaKnown RBP12.98□□□□□ -0.33
SMARCB1-207ENST00000491967 SYNMO15061 1565 aa12.98□□□□□ -0.33
SMARCB1-207ENST00000491967 RPRD2Q5VT52 1461 aaKnown RBP12.97□□□□□ -0.33
SMARCB1-207ENST00000491967 TMEM2Q9UHN6 1383 aa12.97□□□□□ -0.33
SMARCB1-207ENST00000491967 UBAP1LF5GYI3 381 aa12.97□□□□□ -0.33
SMARCB1-207ENST00000491967 ALKQ9UM73 1620 aa12.96□□□□□ -0.33
SMARCB1-207ENST00000491967 TXNDC2Q86VQ3 553 aa12.96□□□□□ -0.33
SMARCB1-207ENST00000491967 SLC52A1Q9NWF4 448 aa12.95□□□□□ -0.34
SMARCB1-207ENST00000491967 TET3O43151 1660 aa12.95□□□□□ -0.34
SMARCB1-207ENST00000491967 UNC13BO14795 1591 aa12.94□□□□□ -0.34
SMARCB1-207ENST00000491967 LRRC7Q96NW7 1537 aa12.94□□□□□ -0.34
SMARCB1-207ENST00000491967 TOM1O60784 492 aa12.93□□□□□ -0.34
SMARCB1-207ENST00000491967 GCC2Q8IWJ2 1684 aa12.93□□□□□ -0.34
SMARCB1-207ENST00000491967 EID1Q9Y6B2 187 aa12.92□□□□□ -0.34
SMARCB1-207ENST00000491967 ADGRB3O60242 1522 aa12.91□□□□□ -0.34
SMARCB1-207ENST00000491967 XIRP1Q702N8 1843 aaKnown RBP12.9□□□□□ -0.34
SMARCB1-207ENST00000491967 IQGAP3Q86VI3 1631 aa12.9□□□□□ -0.34
SMARCB1-207ENST00000491967 E9PCH4 1651 aa12.89□□□□□ -0.35
SMARCB1-207ENST00000491967 ZFYVE9O95405 1425 aa12.88□□□□□ -0.35
SMARCB1-207ENST00000491967 TMEM131LA2VDJ0 1609 aa12.88□□□□□ -0.35
SMARCB1-207ENST00000491967 MYO5BQ9ULV0 1848 aa12.88□□□□□ -0.35
SMARCB1-207ENST00000491967 HSPA1LP34931 641 aa12.87□□□□□ -0.35
SMARCB1-207ENST00000491967 STAG3Q9UJ98 1225 aa12.87□□□□□ -0.35
SMARCB1-207ENST00000491967 RRBP1Q9P2E9 1410 aaKnown RBP12.87□□□□□ -0.35
SMARCB1-207ENST00000491967 KCNA6P17658 529 aa12.86□□□□□ -0.35
SMARCB1-207ENST00000491967 PIP4K2BP78356 416 aa12.84□□□□□ -0.35
SMARCB1-207ENST00000491967 NWD1Q149M9 1564 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms