RNA–Protein interactions for RNA: ENST00000491467.1

SRGAP3-210, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 4

Gene SRGAP3, Length 540 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-210ENST00000491467 CCDC18Q5T9S5 1454 aa17.77■□□□□ 0.44
SRGAP3-210ENST00000491467 A2ML1A8K2U0 1454 aa17.73■□□□□ 0.43
SRGAP3-210ENST00000491467 SYNMO15061 1565 aa17.73■□□□□ 0.43
SRGAP3-210ENST00000491467 ZRANB1Q9UGI0 708 aa17.72■□□□□ 0.43
SRGAP3-210ENST00000491467 EHBP1L1Q8N3D4 1523 aa17.71■□□□□ 0.43
SRGAP3-210ENST00000491467 FOXD1Q16676 465 aa17.7■□□□□ 0.42
SRGAP3-210ENST00000491467 IFFO2Q5TF58 517 aa17.7■□□□□ 0.42
SRGAP3-210ENST00000491467 ANKLE2Q86XL3 938 aa17.7■□□□□ 0.42
SRGAP3-210ENST00000491467 RBM33Q96EV2 1170 aaKnown RBP17.7■□□□□ 0.42
SRGAP3-210ENST00000491467 ATP1B4Q9UN42 357 aaPredicted RBP17.7■□□□□ 0.42
SRGAP3-210ENST00000491467 MLH3Q9UHC1 1453 aa17.69■□□□□ 0.42
SRGAP3-210ENST00000491467 ZNF772Q68DY9 489 aaPredicted RBP17.68■□□□□ 0.42
SRGAP3-210ENST00000491467 SETBP1Q9Y6X0 1596 aa17.68■□□□□ 0.42
SRGAP3-210ENST00000491467 MTUS2Q5JR59 1369 aa17.67■□□□□ 0.42
SRGAP3-210ENST00000491467 RXRBP28702 533 aa17.67■□□□□ 0.42
SRGAP3-210ENST00000491467 NPHP4O75161 1426 aaPredicted RBP17.66■□□□□ 0.42
SRGAP3-210ENST00000491467 XIRP1Q702N8 1843 aaKnown RBP17.65■□□□□ 0.42
SRGAP3-210ENST00000491467 FAM135BQ49AJ0 1406 aa17.65■□□□□ 0.42
SRGAP3-210ENST00000491467 IQGAP1P46940 1657 aa17.65■□□□□ 0.42
SRGAP3-210ENST00000491467 ITSN2Q9NZM3 1697 aa17.65■□□□□ 0.42
SRGAP3-210ENST00000491467 KIDINS220Q9ULH0 1771 aa17.64■□□□□ 0.41
SRGAP3-210ENST00000491467 MEX3CQ5U5Q3 659 aaKnown RBP17.64■□□□□ 0.41
SRGAP3-210ENST00000491467 ROBO1Q9Y6N7 1651 aa17.64■□□□□ 0.41
SRGAP3-210ENST00000491467 ARHGAP5Q13017 1502 aa17.63■□□□□ 0.41
SRGAP3-210ENST00000491467 FGD6Q6ZV73 1430 aa17.6■□□□□ 0.41
SRGAP3-210ENST00000491467 DEPDC5O75140 1603 aa17.6■□□□□ 0.41
SRGAP3-210ENST00000491467 PHLPP1O60346 1717 aa17.6■□□□□ 0.41
SRGAP3-210ENST00000491467 CDK13Q14004 1512 aaKnown RBP17.59■□□□□ 0.41
SRGAP3-210ENST00000491467 MED14O60244 1454 aa17.59■□□□□ 0.41
SRGAP3-210ENST00000491467 NCOA2Q15596 1464 aa17.58■□□□□ 0.41
SRGAP3-210ENST00000491467 MYOM3Q5VTT5 1437 aa17.58■□□□□ 0.41
SRGAP3-210ENST00000491467 SETD5Q9C0A6 1442 aa17.57■□□□□ 0.4
SRGAP3-210ENST00000491467 DHX57Q6P158 1386 aaKnown RBP17.57■□□□□ 0.4
SRGAP3-210ENST00000491467 ABCC1P33527 1531 aa17.57■□□□□ 0.4
SRGAP3-210ENST00000491467 CDK12Q9NYV4 1490 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 JCADQ9P266 1359 aa17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 NUTM2BA6NNL0 878 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 NUTM2EB1AL46 878 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 NUTM2DQ5VT03 806 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 GGT6Q6P531 493 aa17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 NUTM2AQ8IVF1 878 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 THEMISQ8N1K5 641 aaPredicted RBP17.56■□□□□ 0.4
SRGAP3-210ENST00000491467 PTPN23Q9H3S7 1636 aa17.54■□□□□ 0.4
SRGAP3-210ENST00000491467 FAM50AQ14320 339 aaKnown RBP17.53■□□□□ 0.4
SRGAP3-210ENST00000491467 CDK11AQ9UQ88 783 aaPredicted RBP17.53■□□□□ 0.4
SRGAP3-210ENST00000491467 CDC42BPBQ9Y5S2 1711 aa17.52■□□□□ 0.4
SRGAP3-210ENST00000491467 MIA2Q96PC5 1412 aa17.52■□□□□ 0.4
SRGAP3-210ENST00000491467 LRP6O75581 1613 aa17.5■□□□□ 0.39
SRGAP3-210ENST00000491467 KIF14Q15058 1648 aa17.5■□□□□ 0.39
SRGAP3-210ENST00000491467 TNRQ92752 1358 aa17.5■□□□□ 0.39
SRGAP3-210ENST00000491467 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
SRGAP3-210ENST00000491467 ACIN1Q9UKV3 1341 aaKnown RBP17.48■□□□□ 0.39
SRGAP3-210ENST00000491467 FAM135AQ9P2D6 1515 aa17.48■□□□□ 0.39
SRGAP3-210ENST00000491467 UGGT1Q9NYU2 1555 aa17.48■□□□□ 0.39
SRGAP3-210ENST00000491467 FBXO31Q5XUX0 539 aaPredicted RBP17.47■□□□□ 0.39
SRGAP3-210ENST00000491467 ZC3H13Q5T200 1668 aaKnown RBP17.46■□□□□ 0.39
SRGAP3-210ENST00000491467 ITGAEP38570 1179 aa17.46■□□□□ 0.39
SRGAP3-210ENST00000491467 SPATA31A6Q5VVP1 1343 aa17.46■□□□□ 0.38
SRGAP3-210ENST00000491467 RGS12O14924 1447 aa17.45■□□□□ 0.38
SRGAP3-210ENST00000491467 LRP5O75197 1615 aa17.42■□□□□ 0.38
SRGAP3-210ENST00000491467 GCC2Q8IWJ2 1684 aa17.42■□□□□ 0.38
SRGAP3-210ENST00000491467 ATAD2Q6PL18 1390 aa17.41■□□□□ 0.38
SRGAP3-210ENST00000491467 HFM1A2PYH4 1435 aa17.41■□□□□ 0.38
SRGAP3-210ENST00000491467 ZNF316A6NFI3 1004 aaPredicted RBP17.41■□□□□ 0.38
SRGAP3-210ENST00000491467 KDM5DQ9BY66 1539 aa17.41■□□□□ 0.38
SRGAP3-210ENST00000491467 TROQ12816 1431 aaPredicted RBP17.4■□□□□ 0.38
SRGAP3-210ENST00000491467 YY1P25490 414 aa17.4■□□□□ 0.38
SRGAP3-210ENST00000491467 SAMD9LQ8IVG5 1584 aa17.4■□□□□ 0.38
SRGAP3-210ENST00000491467 COL16A1Q07092 1604 aaPredicted RBP17.39■□□□□ 0.38
SRGAP3-210ENST00000491467 TIMELESSQ9UNS1 1208 aa17.39■□□□□ 0.37
SRGAP3-210ENST00000491467 PLXNC1O60486 1568 aa17.38■□□□□ 0.37
SRGAP3-210ENST00000491467 SPAG9O60271 1321 aaKnown RBP17.38■□□□□ 0.37
SRGAP3-210ENST00000491467 AFF2P51816 1311 aa17.38■□□□□ 0.37
SRGAP3-210ENST00000491467 A2MP01023 1474 aa17.37■□□□□ 0.37
SRGAP3-210ENST00000491467 RBM6P78332 1123 aaKnown RBP17.37■□□□□ 0.37
SRGAP3-210ENST00000491467 NLRP1Q9C000 1473 aa17.37■□□□□ 0.37
SRGAP3-210ENST00000491467 PREX2Q70Z35 1606 aa17.36■□□□□ 0.37
SRGAP3-210ENST00000491467 SHPRHQ149N8 1683 aa17.36■□□□□ 0.37
SRGAP3-210ENST00000491467 TMEM94Q12767 1356 aa17.36■□□□□ 0.37
SRGAP3-210ENST00000491467 QTRT2Q9H974 415 aaKnown RBP17.35■□□□□ 0.37
SRGAP3-210ENST00000491467 ATP7AQ04656 1500 aa17.34■□□□□ 0.37
SRGAP3-210ENST00000491467 NAIPQ13075 1403 aa17.33■□□□□ 0.36
SRGAP3-210ENST00000491467 SLAIN2Q9P270 581 aa17.33■□□□□ 0.36
SRGAP3-210ENST00000491467 PZPP20742 1482 aa17.31■□□□□ 0.36
SRGAP3-210ENST00000491467 ROCK1Q13464 1354 aa17.3■□□□□ 0.36
SRGAP3-210ENST00000491467 PROSER2Q86WR7 435 aaPredicted RBP17.3■□□□□ 0.36
SRGAP3-210ENST00000491467 ADGBQ8N7X0 1667 aa17.29■□□□□ 0.36
SRGAP3-210ENST00000491467 DIEXFQ68CQ4 756 aaKnown RBP17.29■□□□□ 0.36
SRGAP3-210ENST00000491467 ZNF777Q9ULD5 760 aaPredicted RBP17.29■□□□□ 0.36
SRGAP3-210ENST00000491467 CDC42BPAQ5VT25 1732 aa17.28■□□□□ 0.36
SRGAP3-210ENST00000491467 CCDC125Q86Z20 511 aa17.28■□□□□ 0.36
SRGAP3-210ENST00000491467 NGLY1Q96IV0 654 aa17.28■□□□□ 0.36
SRGAP3-210ENST00000491467 SENP3-EIF4A1A0A087X0R7 540 aa17.26■□□□□ 0.35
SRGAP3-210ENST00000491467 SCAF11Q99590 1463 aaKnown RBP17.25■□□□□ 0.35
SRGAP3-210ENST00000491467 DAPK1P53355 1430 aa17.25■□□□□ 0.35
SRGAP3-210ENST00000491467 HNRNPMP52272 730 aaKnown RBP eCLIP17.25■□□□□ 0.35
SRGAP3-210ENST00000491467 CROCC2H7BZ55 1655 aa17.25■□□□□ 0.35
SRGAP3-210ENST00000491467 GPATCH8Q9UKJ3 1502 aaKnown RBP17.25■□□□□ 0.35
SRGAP3-210ENST00000491467 MSH6P52701 1360 aa17.25■□□□□ 0.35
SRGAP3-210ENST00000491467 EP400Q96L91 3159 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms