RNA–Protein interactions for RNA: ENST00000491183.5

HMGN1-219, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 527 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-219ENST00000491183 NCOA1Q15788 1441 aa28.11■■■□□ 2.09
HMGN1-219ENST00000491183 FGD6Q6ZV73 1430 aa28.11■■■□□ 2.09
HMGN1-219ENST00000491183 FBXO31Q5XUX0 539 aaPredicted RBP28.11■■■□□ 2.09
HMGN1-219ENST00000491183 FAM135AQ9P2D6 1515 aa28.11■■■□□ 2.09
HMGN1-219ENST00000491183 CAMSAP1Q5T5Y3 1602 aa28.1■■■□□ 2.09
HMGN1-219ENST00000491183 PTPRTO14522 1441 aa28.09■■■□□ 2.09
HMGN1-219ENST00000491183 TCOF1Q13428 1488 aaKnown RBP28.09■■■□□ 2.09
HMGN1-219ENST00000491183 CERKQ8TCT0 537 aa28.09■■■□□ 2.09
HMGN1-219ENST00000491183 ZNF142P52746 1687 aaPredicted RBP28.09■■■□□ 2.09
HMGN1-219ENST00000491183 RNF17Q9BXT8 1623 aaKnown RBP28.07■■■□□ 2.08
HMGN1-219ENST00000491183 CEP170BQ9Y4F5 1589 aaPredicted RBP28.07■■■□□ 2.08
HMGN1-219ENST00000491183 CROCC2H7BZ55 1655 aa28.07■■■□□ 2.08
HMGN1-219ENST00000491183 PZPP20742 1482 aa28.06■■■□□ 2.08
HMGN1-219ENST00000491183 EIF2AK4Q9P2K8 1649 aaKnown RBP28.06■■■□□ 2.08
HMGN1-219ENST00000491183 DAPK1P53355 1430 aa28.05■■■□□ 2.08
HMGN1-219ENST00000491183 DUOX2Q9NRD8 1548 aa28.05■■■□□ 2.08
HMGN1-219ENST00000491183 SHANK2Q9UPX8 1470 aa28.05■■■□□ 2.08
HMGN1-219ENST00000491183 DNMT1P26358 1616 aaKnown RBP28.04■■■□□ 2.08
HMGN1-219ENST00000491183 NCKAP5LQ9HCH0 1330 aa28.03■■■□□ 2.08
HMGN1-219ENST00000491183 RRP7BPQ9NSQ0 103 aa28.03■■■□□ 2.08
HMGN1-219ENST00000491183 MROH1Q8NDA8 1641 aa28.02■■■□□ 2.08
HMGN1-219ENST00000491183 TNRQ92752 1358 aa28.01■■■□□ 2.07
HMGN1-219ENST00000491183 KIF15Q9NS87 1388 aa28.01■■■□□ 2.07
HMGN1-219ENST00000491183 A2ML1A8K2U0 1454 aa28.01■■■□□ 2.07
HMGN1-219ENST00000491183 ABCC3O15438 1527 aa28■■■□□ 2.07
HMGN1-219ENST00000491183 PLA2R1Q13018 1463 aa27.98■■■□□ 2.07
HMGN1-219ENST00000491183 CHIC2Q9UKJ5 165 aa27.96■■■□□ 2.07
HMGN1-219ENST00000491183 ZC3H13Q5T200 1668 aaKnown RBP27.96■■■□□ 2.07
HMGN1-219ENST00000491183 PKD2Q13563 968 aa27.95■■■□□ 2.06
HMGN1-219ENST00000491183 ERBINQ96RT1 1412 aa27.93■■■□□ 2.06
HMGN1-219ENST00000491183 CEP152O94986 1710 aa27.93■■■□□ 2.06
HMGN1-219ENST00000491183 ANKRD30AQ9BXX3 1397 aa27.91■■■□□ 2.06
HMGN1-219ENST00000491183 FAM50AQ14320 339 aaKnown RBP27.91■■■□□ 2.06
HMGN1-219ENST00000491183 LTBP4Q8N2S1 1624 aa27.91■■■□□ 2.06
HMGN1-219ENST00000491183 PRDM15P57071 1507 aaPredicted RBP27.88■■■□□ 2.05
HMGN1-219ENST00000491183 SPATA31D1Q6ZQQ2 1576 aa27.88■■■□□ 2.05
HMGN1-219ENST00000491183 NLRP1Q9C000 1473 aa27.88■■■□□ 2.05
HMGN1-219ENST00000491183 CFAP65Q6ZU64 1925 aaKnown RBP27.87■■■□□ 2.05
HMGN1-219ENST00000491183 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.86■■■□□ 2.051e-6■□□□□ 9.8
HMGN1-219ENST00000491183 ERVK-7P63135 1459 aa27.86■■■□□ 2.05
HMGN1-219ENST00000491183 DEPDC5O75140 1603 aa27.85■■■□□ 2.05
HMGN1-219ENST00000491183 ADGRL2O95490 1459 aa27.84■■■□□ 2.05
HMGN1-219ENST00000491183 THEMISQ8N1K5 641 aaPredicted RBP27.84■■■□□ 2.05
HMGN1-219ENST00000491183 ZNF335Q9H4Z2 1342 aaPredicted RBP27.83■■■□□ 2.05
HMGN1-219ENST00000491183 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.83■■■□□ 2.05
HMGN1-219ENST00000491183 UGGT1Q9NYU2 1555 aa27.82■■■□□ 2.04
HMGN1-219ENST00000491183 ARHGAP31Q2M1Z3 1444 aa27.81■■■□□ 2.04
HMGN1-219ENST00000491183 PPARGC1BQ86YN6 1023 aaKnown RBP27.8■■■□□ 2.04
HMGN1-219ENST00000491183 POLR1AO95602 1720 aaPredicted RBP27.8■■■□□ 2.04
HMGN1-219ENST00000491183 NEURL4Q96JN8 1562 aa27.79■■■□□ 2.04
HMGN1-219ENST00000491183 ANKLE2Q86XL3 938 aa27.78■■■□□ 2.04
HMGN1-219ENST00000491183 KANK1Q14678 1352 aa27.77■■■□□ 2.04
HMGN1-219ENST00000491183 VWDEQ8N2E2 1590 aa27.76■■■□□ 2.03
HMGN1-219ENST00000491183 LMTK2Q8IWU2 1503 aa27.73■■■□□ 2.03
HMGN1-219ENST00000491183 IQSEC2Q5JU85 1478 aa27.72■■■□□ 2.03
HMGN1-219ENST00000491183 ANKRD50Q9ULJ7 1429 aa27.72■■■□□ 2.03
HMGN1-219ENST00000491183 UBR1Q8IWV7 1749 aa27.7■■■□□ 2.03
HMGN1-219ENST00000491183 MED14O60244 1454 aa27.7■■■□□ 2.02
HMGN1-219ENST00000491183 NPHP4O75161 1426 aaPredicted RBP27.67■■■□□ 2.02
HMGN1-219ENST00000491183 ROCK1Q13464 1354 aa27.63■■■□□ 2.01
HMGN1-219ENST00000491183 EFCAB6Q5THR3 1501 aa27.63■■■□□ 2.01
HMGN1-219ENST00000491183 PIK3C2BO00750 1634 aa27.62■■■□□ 2.01
HMGN1-219ENST00000491183 ITGAEP38570 1179 aa27.61■■■□□ 2.01
HMGN1-219ENST00000491183 IDI1Q13907 227 aa27.61■■■□□ 2.01
HMGN1-219ENST00000491183 IQGAP1P46940 1657 aa27.61■■■□□ 2.01
HMGN1-219ENST00000491183 NOS1P29475 1434 aa27.6■■■□□ 2.01
HMGN1-219ENST00000491183 ARHGAP23Q9P227 1491 aa27.6■■■□□ 2.01
HMGN1-219ENST00000491183 LTKP29376 864 aa27.6■■■□□ 2.01
HMGN1-219ENST00000491183 SYNMO15061 1565 aa27.6■■■□□ 2.01
HMGN1-219ENST00000491183 SLIT1O75093 1534 aa27.58■■■□□ 2.01
HMGN1-219ENST00000491183 TXNDC2Q86VQ3 553 aa27.57■■■□□ 2
HMGN1-219ENST00000491183 SCAF11Q99590 1463 aaKnown RBP27.56■■■□□ 2
HMGN1-219ENST00000491183 CPS1P31327 1500 aa27.56■■■□□ 2
HMGN1-219ENST00000491183 UNC13BO14795 1591 aa27.56■■■□□ 2
HMGN1-219ENST00000491183 UBAP1LF5GYI3 381 aa27.54■■■□□ 2
HMGN1-219ENST00000491183 TET3O43151 1660 aa27.54■■■□□ 2
HMGN1-219ENST00000491183 STAG3Q9UJ98 1225 aa27.54■■■□□ 2
HMGN1-219ENST00000491183 RPRD2Q5VT52 1461 aaKnown RBP27.53■■■□□ 2
HMGN1-219ENST00000491183 TMEM2Q9UHN6 1383 aa27.53■■■□□ 2
HMGN1-219ENST00000491183 KDM5AP29375 1690 aaKnown RBP27.52■■■□□ 2
HMGN1-219ENST00000491183 STRCP1A6NGW2 1772 aa27.5■■□□□ 1.99
HMGN1-219ENST00000491183 SLC52A1Q9NWF4 448 aa27.5■■□□□ 1.99
HMGN1-219ENST00000491183 EID1Q9Y6B2 187 aa27.5■■□□□ 1.99
HMGN1-219ENST00000491183 GCC2Q8IWJ2 1684 aa27.49■■□□□ 1.99
HMGN1-219ENST00000491183 RRBP1Q9P2E9 1410 aaKnown RBP27.49■■□□□ 1.99
HMGN1-219ENST00000491183 IQGAP3Q86VI3 1631 aa27.45■■□□□ 1.99
HMGN1-219ENST00000491183 ADGRB3O60242 1522 aa27.45■■□□□ 1.98
HMGN1-219ENST00000491183 E9PCH4 1651 aa27.44■■□□□ 1.98
HMGN1-219ENST00000491183 NUP155O75694 1391 aa27.44■■□□□ 1.98
HMGN1-219ENST00000491183 LRRC7Q96NW7 1537 aa27.41■■□□□ 1.98
HMGN1-219ENST00000491183 MYO5BQ9ULV0 1848 aa27.39■■□□□ 1.98
HMGN1-219ENST00000491183 TOM1O60784 492 aa27.38■■□□□ 1.97
HMGN1-219ENST00000491183 TMEM131LA2VDJ0 1609 aa27.37■■□□□ 1.97
HMGN1-219ENST00000491183 PIP4K2BP78356 416 aa27.35■■□□□ 1.97
HMGN1-219ENST00000491183 ALKQ9UM73 1620 aa27.34■■□□□ 1.97
HMGN1-219ENST00000491183 SLC26A8Q96RN1 970 aa27.34■■□□□ 1.97
HMGN1-219ENST00000491183 ZFYVE9O95405 1425 aa27.33■■□□□ 1.97
HMGN1-219ENST00000491183 NAIPQ13075 1403 aa27.33■■□□□ 1.96
HMGN1-219ENST00000491183 SCAF1Q9H7N4 1312 aaKnown RBP27.32■■□□□ 1.96
HMGN1-219ENST00000491183 CHGAP10645 457 aaKnown RBP27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms